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81.
Steven T. Gardner Emily M. Bertucci Randall Sutton Andy Horcher Doug Aubrey Benjamin B. Parrott 《Molecular ecology resources》2023,23(1):131-144
Biological ageing is connected to life history variation across ecological scales and informs a basic understanding of age-related declines in organismal function. Altered DNA methylation dynamics are a conserved aspect of biological ageing and have recently been modelled to predict chronological age among vertebrate species. In addition to their utility in estimating individual age, differences between chronological and predicted ages arise due to acceleration or deceleration of epigenetic ageing, and these discrepancies are linked to disease risk and multiple life history traits. Although evidence suggests that patterns of DNA methylation can describe ageing in plants, predictions with epigenetic clocks have yet to be performed. Here, we resolve the DNA methylome across CpG, CHG, and CHH-methylation contexts in the loblolly pine tree (Pinus taeda) and construct epigenetic clocks capable of predicting ages in this species within 6% of its maximum lifespan. Although patterns of CHH-methylation showed little association with age, both CpG and CHG-methylation contexts were strongly associated with ageing, largely becoming hypomethylated with age. Among age-associated loci were those in close proximity to malate dehydrogenase, NADH dehydrogenase, and 18S and 26S ribosomal RNA genes. This study reports one of the first epigenetic clocks in plants and demonstrates the universality of age-associated DNA methylation dynamics which can inform conservation and management practices, as well as our ecological and evolutionary understanding of biological ageing in plants. 相似文献
82.
83.
Mapping of resistance to the potato cyst nematode Globodera rostochiensis from the wild potato species Solanum vernei 总被引:1,自引:0,他引:1
Jeanne M. E. Jacobs Herman J. van Eck Karin Horsman Paul F. P. Arens Brigitte Verkerk-Bakker Evert Jacobsen Andy Pereira Willem J. Stiekema 《Molecular breeding : new strategies in plant improvement》1996,2(1):51-60
A population of diploid potato (Solanum tuberosum) was used for the genetic analysis and mapping of a locus for resistance to the potato cyst nematode Globodera rostochiensis, introgressed from the wild potato species Solanum vernei. Resistance tests of 108 genotypes of a F1 population revealed the presence of a single locus with a dominant allele for resistance to G. rostochiensis pathotype Ro1. This locus, designated GroV1, was located on chromosome 5 with RFLP markers. Fine-mapping was performed with RAPD and SCAR markers. The GroV1 locus was found in the same region of the potato genome as the S. tuberosum ssp. andigena H1 nematode resistance locus. Both resistance loci could not excluded to be allelic. The identification of markers flanking the GroV1 locus offers a valuable strategy for marker-assisted selection for introgression of this nematode resistance.Abbreviations BSA
bulked segregant analysis
- RAPD
random-amplified polymorphic DNA
- RFLP
restriction fragment length polymorphism
- SCAR
sequence-characterized amplified region 相似文献
84.
Atelocauda koae, a rust of the native HawaiianAcacia koa, is considered as a demicyclic species, having spermogonial, aecial, and telial states, but is unusual in production of aeciospores
simultaneously with teliospores rather than consecutively. Host inoculation with spores of each state separately confirmed
that the life cycle was perpetuated by the telial state, but the aeciospores, while capable of germination and stomal penetration,
did not produce detectable infection. This rust therefore behaves as a microcyclic species, and appears to be in evolutionary
transition toward this reduced state. Teliospores produced vestigial, permanently attached basidiosopores which germinated
to produce infective hyphae. The hyphae entered the host either through stomata or penetrated the epidermis directly, with
the latter method being more common. Unusual nuclear associated with teliospore germination, in which meiosis occurs in more
than one diploid nucleus was observed, in confirmation of an earlier study. 相似文献
85.
86.
José A. A. Sant''Ana Pereira Arnold De Haan Andy Wessels Antoon F. M. Moorman Anthony J. Sargeant 《The Histochemical journal》1995,27(9):715-722
Summary In the present study we report a novel histochemical method which, by sequential pre-incubations in alkaline and acidic media,
selectively differentiates muscle fibres expressing myosin heavy chain IIX, on the basis of a specific profile for myofibrillar
actomyosin ATPase (mATPase) activity. The enzyme reactions were tested for specificity by means of anti-myosin heavy chain
monoclonal antibodies, which were characterized on Western blots of muscle homogenates. Enzyme histochemical reactions with
the traditional pH buffers were compared to those of the new method and, in conjunction with the immunoreactions, used to
confirm the relationship between MyHC expression and the distinct profiles for mATPase. Imrnunohistochemical reactions demonstrated
that the new method only differentiates those fibres expressing myosin heavy chain IIX. The method revealed a continuum in
which the intermediate staining intensities corresponded to hybrid fibres expressing myosin heavy chain IIX in combination
with either the IIA or IIB forms. Quantitative histochemistry and immunohistochemistry (by image analysis), used to examine
the relationship between staining intensities for mATPase and amounts of myosin heavy chain IIX expression, revealed that
the new method discriminates well between hybrid fibres expressing variable amounts of the IIX isoform (r2 = 0.93). 相似文献
87.
The full-length vanilla necrosis potyvirus (VNV) coat protein (CP) gene was introduced into Nicotiana benthamiana plants via Agrobacterium tumefaciens-mediated transformation. Four constructs contained either: sense (+) CP sequence, antisense (-) CP sequence, sense CP sequence with a Kozak's consensus ATG resulting in a change in the first amino acid, or antisense CP sequence with the Kozak's modification. When mechanically inoculated with a high concentration of VNV, one of the plant lines containing the full-length sense CP gene was highly resistant to virus infection. Plants from the resistant lines expressed the CP at a relatively low level compared to susceptible lines containing the same construct. Plants containing the other three constructs were either susceptible or showed delayed symptom expression. 相似文献
88.
Thomas L. German Scott Adkins Andy Witherell Kathryn E. Richmond William R. Knaack David K. Willis 《Plant Molecular Biology Reporter》1995,13(2):110-117
Mechanical inoculation ofArabidopsis thaliana ecotype Columbia with tomato spotted wilt virus led to viral replication and spread as determined by dot blot and ELISA analysis.
Severe symptoms were observed three to four weeks post-inoculation. Early symptoms were manifested as chlorotic spots on uninoculated
leaves. Later in the infection process, some plants showed complete chlorosis and wilting prior to bolting. Bolts that were
developed by infected plants were chlorotic and deformed. These preliminary results suggest thatA. thaliana could become a model system for the genetic analysis of host factors required for the replication of viruses in the family
Bunyaviridae, which includes viruses that cause important diseases of both plants and animals. 相似文献
89.
Barry I. Schweitzer Kevin H. Gardner Gregory Tucker-Kellogg 《Journal of biomolecular NMR》1995,6(2):180-188
Summary While both 31P and 113Cd are present at locations of interest in many different macromolecular systems, heteronuclear-detected relaxation measurements on these nuclei have been restrained by limitations in either resolution or signal-to-noise ratio. We have developed hetero TOCSY-based methods to overcome both of these problems. Two-dimensional versions of these experiments were utilized to measure 31P T1 and T2 values in DNA oligonucleotides; the additional resolution offered by a second dimension allowed determination of these values for most of the 31P resonances in a DNA dodecamer. The results from the experiments indicated that there was little significant variation in T1 values for the different phosphates in the DNA dodecamer; however, the T2 values showed a clear pattern, with lower values in the interior of the sequence than at the ends of the helix. Furthermore, a significant correlation between 31P chemical shifts and T2 values was observed. One-dimensional, frequency-selective versions of these experiments were also developed for use on systems containing a smaller number of heteronuclear spins. These methods were applied to investigate the heteronuclear relaxation properties of 113Cd in 113Cd2LAC9(61), a Cys6Zn2 DNA-binding domain. Data from the experiments confirm biochemical evidence that more significant differences occur in the metal-protein interactions between the two metal-binding sites than has been previously identified for proteins containing this motif. 相似文献
90.
Dispersed acini from rat pancreas were used to examine the effects of various pancreatic secretagogues on the fine structure of the acinar cell plasma membrane. With the C-terminal octapeptide of cholecystokinin, the C-terminal tetrapeptide of cholecystokinin, carbamylcholine, bombesin, A23187, vasoactive intestinal peptide or 8-bromo cyclic adenosine monophosphate, concentrations of the secretagogues that caused maximal stimulation of enzyme secretion did not produce alterations of the acinar cell plasma membrane. Supramaximal concentrations of the C-terminal octapeptide of cholecystokinin, the C-terminal tetrapeptide of cholecystokinin or carbamylcholine induced the formation of cytoplasmic protrusions at the basolateral plasma membrane of the pancreatic acinar cell, whereas supramaximal concentration of bombesin, A23187, vasoactive intestinal peptide or 8-bromo cyclic AMP did not alter the morphology of the acinar cell. Effects of the C-terminal octapeptide of cholecystokinin could be detected as early as after two minutes of incubation and these effects progressed for up to 30 minutes of incubation. 相似文献