Single Nucleotide Polymorphisms in the Wnt and BMP Pathways and Colorectal Cancer Risk in a Spanish Cohort

Background

Colorectal cancer (CRC) is considered a complex disease, and thus the majority of the genetic susceptibility is thought to lie in the form of low-penetrance variants following a polygenic model of inheritance. Candidate-gene studies have so far been one of the basic approaches taken to identify these susceptibility variants. The consistent involvement of some signaling routes in carcinogenesis provided support for pathway-based studies as a natural strategy to select genes that could potentially harbour new susceptibility loci.

Methodology/Principal Findings

We selected two main carcinogenesis-related pathways: Wnt and BMP, in order to screen the implicated genes for new risk variants. We then conducted a case-control association study in 933 CRC cases and 969 controls based on coding and regulatory SNPs. We also included rs4444235 and rs9929218, which did not fulfill our selection criteria but belonged to two genes in the BMP pathway and had consistently been linked to CRC in previous studies. Neither allelic, nor genotypic or haplotypic analyses showed any signs of association between the 37 screened variants and CRC risk. Adjustments for sex and age, and stratified analysis between sporadic and control groups did not yield any positive results either.

Conclusions/Significance

Despite the relevance of both pathways in the pathogenesis of the disease, and the fact that this is indeed the first study that considers these pathways as a candidate-gene selection approach, our study does not present any evidence of the presence of low-penetrance variants for the selected markers in any of the considered genes in our cohort.     

RETRACTED ARTICLE: Capture-removal model sampling estimation based on big data

Capture-removal methods were often used to estimate the unknown population size and variance, which are applied in Biology, Ecology and Sociology. In this study, the improved capture removal model was adapted to explore the propagation scale as well as the involved population size of network information dissemination, and then, empirical analysis was carried out using the dissemination of public opinion on ‘8\(\cdot \)12’ Tianjin port explosion as an example. Our results indicate that the proposed method can effectively estimate the range of the spread of the hot spots in social networks. This conclusion might be that social network has gradually become an important path and mode of communication in public discourse, and provide evidence for sampling estimation in big data analysis.     

SANI-Severe Asthma Network in Italy: a way forward to monitor severe asthma

Even if severe asthma (SA) accounts for 5–10% of all cases of the disease, it is currently a crucial unmet need, owing its difficult clinical management and its high social costs. For this reason several networks, focused on SA have been organized in some countries, in order to select these patients, to recognize their clinical features, to evaluate their adherence, to classify their biological/clinical phenotypes, to identify their eligibility to the new biologic therapies and to quantify the costs of the disease. Aim of the present paper is to describe the ongoing Italian Severe Asthma Network (SANI). Up today 49 centres have been selected, widespread on the national territory. Sharing the same diagnostic protocol, data regarding patients with SA will be collected and processed in a web platform. After their recruitment, SA patients will be followed in the long term in order to investigate the natural history of the disease. Besides clinical data, the cost/benefit evaluation of the new biologics will be verified as well as the search of peculiar biomarker(s) of the disease.     

分子伴侣参与调控动、植物的发育和进化进程

近年来, 人们对分子伴侣的功能研究取得了很大进展, 阐明了它参与细胞新合成蛋白多肽的折叠、组装、运输和蛋白质的降解过程。在这些过程中, 伴随着分子伴侣表达量的高低变化, 细胞线粒体数量也会发生相应的变化。文章综述了分子伴侣参与调控动、植物的发育和进化进程, 如: 动、植物育性调控, 抗逆境能力提高及热休克蛋白-多肽复合物的肿瘤免疫治疗探索等。     

KRAB型锌指蛋白在高等脊椎动物胚胎发育和肿瘤发生、发展中的调控功能

KRAB型锌指蛋白(KRAB-ZFPs)最早出现于四足类脊椎动物, 且进化非常迅速, 是人类基因组编码的最大转录因子家族。尽管当前对此家族蛋白发挥调控功能的分子机制已有较为深入的研究, 但关于此家族蛋白所具备的高等脊椎动物特有的调控功能目前尚无全面系统的认识。文章对KRAB型锌指蛋白在高等脊椎动物的胚胎发育及肿瘤发生、发展中发挥的调控功能进行综述, 以期丰富对该家族蛋白在不同生理、病理过程中调控功能的认识, 为今后更深入的理论和应用研究打下坚实基础。     

REV3基因对结肠癌细胞遗传信息表达的影响

利用RNA干扰技术降低REV3基因在人类结肠癌细胞(SW480)中的表达, 以荧光实时定量PCR检测REV3表达量的降低情况, 选择低表达效率具有统计学意义的细胞作为实验组细胞。运用细胞生长曲线、MTT、微核和姐妹染色单体交换等方法, 对实验组和对照组细胞进行细胞生长周期、增殖变化情况和遗传信息表达等指标的检测。结果显示: REV3低表达的结肠癌实验组细胞在细胞增殖以及细胞的微核和姐妹染色单体交换等遗传信息表达均明显低于结肠癌对照组细胞, 实验结果具有统计学意义(P＜0.05); 结肠癌的两对照组间(阴性和空白)的结果虽然有一定的差异, 但没有统计学意义。研究结果提示, REV3低表达时, 可能对结肠癌细胞(SW480)的生长与增殖产生影响, 并对微核和姐妹染色单体交换等遗传不稳定现象的产生有一定的抑制作用。     

广西中泥盆世腕足动物空间分布及古环境意义

统计广西中泥盆世不同沉积相区二十条剖面的腕足动物化石记录共计13目45科69属167种,其中Eifelian期47属73种,Givetian期32属100种.对不同级别分类单元的多样性分析表明,从Eifelian期到Givetian期,不仅腕足动物各个目的组成及多样性结构有明显改变,而且各个时期不同沉积环境下的腕足动物...     

CDK11p46 and RPS8 associate with each other and suppress translation in a synergistic manner

CDK11p46, a 46 kDa isoform of the PITSLRE kinase family, is a key mediator of cell apoptosis, while the precise mechanism remains to be elucidated. By using His pull-down and mass spectrometry analysis, we identified the ribosomal protein S8 (RPS8), a member of the small subunit ribosome, as an interacting partner of CDK11p46. Further analysis confirmed the association of CDK11p46 and RPS8 in vitro and in vivo, and revealed that RPS8 was not a substrate of CDK11p46. Moreover, RPS8 and CDK11p46 synergize to inhibit the translation process both in cap- and internal ribosomal entry site (IRES)-dependent way, and sensitize cells to Fas ligand-induced apoptosis. Taken together, our results provide evidence for the novel role of CDK11p46 in the regulation of translation and cell apoptosis.     

CX3CR1 protein signaling modulates microglial activation and protects against plaque-independent cognitive deficits in a mouse model of Alzheimer disease

Aberrant microglial activation has been proposed to contribute to the cognitive decline in Alzheimer disease (AD), but the underlying molecular mechanisms remain enigmatic. Fractalkine signaling, a pathway mediating the communication between microglia and neurons, is deficient in AD brains and down-regulated by amyloid-β. Although fractalkine receptor (CX3CR1) on microglia was found to regulate plaque load, no functional effects have been reported. Our study demonstrates that CX3CR1 deficiency worsens the AD-related neuronal and behavioral deficits. The effects were associated with cytokine production but not with plaque deposition. Ablation of CX3CR1 in mice overexpressing human amyloid precursor protein enhanced Tau pathology and exacerbated the depletion of calbindin in the dentate gyrus. The levels of calbindin in the dentate gyrus correlated negatively with those of tumor necrosis factor α and interleukin 6, suggesting neurotoxic effects of inflammatory factors. Functionally, removing CX3CR1 in human amyloid precursor protein mice worsened the memory retention in passive avoidance and novel object recognition tests, and their memory loss in the novel object recognition test is associated with high levels of interleukin 6. Our findings identify CX3CR1 as a key microglial pathway in protecting against AD-related cognitive deficits that are associated with aberrant microglial activation and elevated inflammatory cytokines.