HATCHING GLANDS IN THE TELEOSTS, BRACHYDANIO RERIO. DANIO MALABARICUS, MOENKHAUSIA OLIGOLEPIS AND BARBUS SCHUBERTI

Many teleost embryos produce an enzyme within specialized glands, which facilitate hatching. The enzyme attacks the chorion which becomes so weak that it may be ruptured easily by a blow of the tail.
The embryos of Brachydanio rerio, Danio malabaricus, Moenkhausia oligolepis and Barbus schuberti show some morphological differences in the distribution of the hatching gland cells. More specificity can be found in the ultrastructure of hatching gland cells, which are loaded with enzyme granules prior to hatching. In all four species the nucleus is located near the basis of the cell. The hatching enzyme is contained within granules, which arise from the Golgi body.     

Probing small ribosomal subunit RNA helix 45 acetylation across eukaryotic evolution

NAT10 is an essential enzyme that catalyzes N⁴-acetylcytidine (ac⁴C) in eukaryotic transfer RNA and 18S ribosomal RNA. Recent studies suggested that rRNA acetylation is dependent on SNORD13, a box C/D small nucleolar RNA predicted to base-pair with 18S rRNA via two antisense elements. However, the selectivity of SNORD13-dependent cytidine acetylation and its relationship to NAT10’s essential function remain to be defined. Here, we demonstrate that SNORD13 is required for acetylation of a single cytidine of human and zebrafish 18S rRNA. In-depth characterization revealed that SNORD13-dependent ac⁴C is dispensable for human cell growth, ribosome biogenesis, translation and development. This loss of function analysis inspired a cross-evolutionary survey of the eukaryotic rRNA acetylation ‘machinery’ that led to the characterization of many novel metazoan SNORD13 genes. This includes an atypical SNORD13-like RNA in Drosophila melanogaster which guides ac⁴C to 18S rRNA helix 45 despite lacking one of the two rRNA antisense elements. Finally, we discover that Caenorhabditis elegans 18S rRNA is not acetylated despite the presence of an essential NAT10 homolog. Our findings shed light on the molecular mechanisms underlying SNORD13-mediated rRNA acetylation across eukaryotic evolution and raise new questions regarding the biological and evolutionary relevance of this highly conserved rRNA modification.     

Production of L-DOPA by cell suspension cultures of Mucuna pruriens

The endogenous synthesis of 3-(3,4-dihydroxyphenyl)-L-alanine (L-DOPA) by cell suspension cultures of Mucuna pruriens was found to be influenced by several environmental parameters. The nature of the nitrogen source as well as the concentration of nitrogen containing salts, sucrose and phosphate in the culture medium were found to affect the biosynthesis of L-DOPA. Addition of 2, 4-dichlorophenoxyacetic acid to the medium suppressed L-DOPA production; continuous illumination of the cultures had a strong beneficial effect on L-DOPA production. L-DOPA was accumulated intracellularly by the cell suspension cultures. These observations further demonstrate that for certain products of plant cell suspensions product synthesis can be manipulated by a proper selection of specified nutrients.     

Fellow travellers: a concordance of colonization patterns between mice and men in the North Atlantic region

Background

In the Calvin cycle of eubacteria, the dephosphorylations of both fructose-1, 6-bisphosphate (FBP) and sedoheptulose-1, 7-bisphosphate (SBP) are catalyzed by the same bifunctional enzyme: fructose-1, 6-bisphosphatase/sedoheptulose-1, 7-bisphosphatase (F/SBPase), while in that of eukaryotic chloroplasts by two distinct enzymes: chloroplastic fructose-1, 6-bisphosphatase (FBPase) and sedoheptulose-1, 7-bisphosphatase (SBPase), respectively. It was proposed that these two eukaryotic enzymes arose from the divergence of a common ancestral eubacterial bifunctional F/SBPase of mitochondrial origin. However, no specific affinity between SBPase and eubacterial FBPase or F/SBPase can be observed in the previous phylogenetic analyses, and it is hard to explain why SBPase and/or F/SBPase are/is absent from most extant nonphotosynthetic eukaryotes according to this scenario.

Results

Domain analysis indicated that eubacterial F/SBPase of two different resources contain distinct domains: proteobacterial F/SBPases contain typical FBPase domain, while cyanobacterial F/SBPases possess FBPase_glpX domain. Therefore, like prokaryotic FBPase, eubacterial F/SBPase can also be divided into two evolutionarily distant classes (Class I and II). Phylogenetic analysis based on a much larger taxonomic sampling than previous work revealed that all eukaryotic SBPase cluster together and form a close sister group to the clade of epsilon-proteobacterial Class I FBPase which are gluconeogenesis-specific enzymes, while all eukaryotic chloroplast FBPase group together with eukaryotic cytosolic FBPase and form another distinct clade which then groups with the Class I FBPase of diverse eubacteria. Motif analysis of these enzymes also supports these phylogenetic correlations.

Conclusions

There are two evolutionarily distant classes of eubacterial bifunctional F/SBPase. Eukaryotic FBPase and SBPase do not diverge from either of them but have two independent origins: SBPase share a common ancestor with the gluconeogenesis-specific Class I FBPase of epsilon-proteobacteria (or probably originated from that of the ancestor of epsilon-proteobacteria), while FBPase arise from Class I FBPase of an unknown kind of eubacteria. During the evolution of SBPase from eubacterial Class I FBPase, the SBP-dephosphorylation activity was acquired through the transition ??from specialist to generalist??. The evolutionary substitution of the endosymbiotic-origin cyanobacterial bifunctional F/SBPase by the two light-regulated substrate-specific enzymes made the regulation of the Calvin cycle more delicate, which contributed to the evolution of eukaryotic photosynthesis and even the entire photosynthetic eukaryotes.     

Synthesis and biological evaluation of solubilized sulfonamide analogues of the phosphatidylinositol 3-kinase inhibitor ZSTK474

Replacing one of the morpholine groups of the phosphatidylinositol 3-kinase (PI3K) inhibitor ZSTK474 with a variety of sulfonamide-linked solubilizing substituents produced a new class of active and potent PI3Kα inhibitors, with several derivatives demonstrating high PI3Kα enzyme potency and good cellular potency in two human derived cell lines. The overall results suggest a preference for linear and somewhat flexible solubilizing functions. From this series, compound 16, also known as SN32976, was selected for advanced preclinical evaluation.     

Inverse Correlation between ABA Content and Germinability throughout the Maturation and the In Vitro Culture of the Embryo of Phaseolus vulgaris

Prevost, I. and Le Page-Degivry, M. Th. 1985. Inverse correlationbetween ABA content and germinability throughout the maturationand the in vitro culture of the embryo of Phaseolus vulgaris.—J.exp. Bot. 36: 1457–1464. Changes in embryo abscisic acid (ABA) content during the maturationof the seed of Phaseolus vulgaris cv. Contender were followed,using a radio-immunoassay. The pattern of change is similarto that already described in several species: a rapid increase(from the 18th to 29th day after anthesis), was followed bya decrease, the ABA level being ten times lower on the 48thday than on the 29th. Embryos isolated from the 18th to the48th day after anthesis were able to ‘germinate’when cultivated on a mineral medium supplemented with sucroseand agar. The development pattern varied throughout the embryogenesisand could be correlated with the differentiation of the embryoat the time of isolation. Before germination could take place,we observed a lag phase, the duration of which could be correlatedwith embryo ABA content. As ABA content increased in the youngestembryos the duration of the lag phase increased. In the sameway, the number of days to germination was shown to diminishas ABA content decreased. Inverse correlation between ABA contentand germinability was thus demonstrated throughout the developmentof the embryo. During in vitro culture, free ABA content decreased in the embryoand reached low values a few days before germination occurred.So the beginning of root elongation in culture was again wellcorrelated with the disappearance of free endogenous ABA. Atransfer experiment inducing an earlier germination associatedwith a more limited development suggests that the lag phaseis associated with an active continuation of embryonic development Key words: Embryo maturation, abscisic acid, germinability     

Relationships between Adsorption, Chemical State and Fluxes of Cadmium Applied as Cd(NO3)2 in Isolated Xylem Cell Walls of Tomato

Wolterbeek, H. Th. 1987. Relationships between adsorption, chemicalstate and fluxes of cadmium applied as Cd(NO₃)₂ in isolatedxylem cell walls of tomato.—J. exp. Bot. 38: 419–432. Isolated xylem cell wall pieces were applied as membranes inion diffusion experiments. The cell walls were isolated fromtomato internodes (Lycopersicon esculentum Mill, cv. Tiny Tim)and sealed in a two-compartment diffusion system. In flux andadsorption calculations, the cell wall was regarded as a leakymembrane with parallel fluxes through Donnan Free Space (DFS)and Water Free Space (WFS). During the experiments absorptioninto and diffusion across the walls was determined of Cd^{2 +}, applied as ¹¹⁵Cd(NO₃)₂. Flux experiments with ⁸²Br^–indicated that excluded volume effects and path tortuosity resultedin apparent WFS diffusion coefficients in the walls which were0·012 times as high as in water. The free proton concentration in the DFS was shown to be relatedto a complex formation between fixed charges and Cd^{2 +}. Thecell wall permeability for Cd^{2 +} and NO₃^– varied withapplied and absorbed concentrations, and the Cd^{2 +} flux curveshowed an inflexion point coinciding with a buffered degreeof dissociation of fixed charges in the DFS. The necessary couplingof fluxes of opposite charges resulted in relatively high NO₃^–and small Cd^{2 +} permeability of the DFS for strongly dilutedsolutions (P = 10^–4 m s^–1 and 10^–11 m s^–1for NO₃^– and Cd^{2 +} respectively). The results demonstratethe possible regulatory effects of the cell wall in processesof ion transfer from xylem vessels, or ion uptake in plant tissues. Key words: Cadmium, chemical state, DFS, WFS, ion flux, permeability, xylem cell walls, tomato, bromium, nitrate