Growth period QTL-allele constitution of global soybeans and its differential evolution changes in geographic adaptation versus maturity group extension

Soybean (Glycine max (L.) Merr.) has been disseminated globally as a photoperiod/temperature-sensitive crop with extremely diverse days to flowering (DTF) and days to maturity (DTM) values. A population with 371 global varieties covering 13 geographic regions and 13 maturity groups (MGs) was analyzed for its DTF and DTM QTL-allele constitution using restricted two-stage multi-locus genome-wide association study (RTM-GWAS). Genotypes with 20 701 genome-wide SNPLDBs (single-nucleotide polymorphism linkage disequilibrium blocks) containing 55 404 haplotypes were observed, and 52 DTF QTLs and 59 DTM QTLs (including 29 and 21 new ones) with 241 and 246 alleles (two to 13 per locus) were detected, explaining 84.8% and 74.4% of the phenotypic variance, respectively. The QTL-allele matrix characterized with all QTL-allele information of each variety in the global population was established and subsequently separated into geographic and MG set submatrices. Direct comparisons among them revealed that the genetic adaptation from the origin to geographic subpopulations was characterized by new allele/new locus emergence (mutation) but little allele exclusion (selection), while that from the primary MG set to emerged early and late MG sets was characterized by allele exclusion without allele emergence. The evolutionary changes involved mainly 72 DTF and 71 DTM alleles on 28 respective loci, 10–12 loci each with three to six alleles being most active. Further recombination potential for faster maturation (12–21 days) or slower maturation (14–56 days) supported allele convergence (recombination) as a constant genetic factor in addition to migration (inheritance). From the QTLs, 44 DTF and 36 DTM candidate genes were annotated and grouped respectively into nine biological processes, indicating multi-functional DTF/DTM genes are involved in a complex gene network. In summary, we identified QTL-alleles relatively thoroughly using RTM-GWAS for direct matrix comparisons and subsequent analysis.     

Development of a cyclosporin A derivative with excellent anti-hepatitis C virus potency

Synthetic modification of cyclosporin A at P3-P4 positions led to the discovery of NIM258, a next generation cyclophilin inhibitor with excellent anti-hepatitis C virus potency, with decreased transporter inhibition, and pharmacokinetics suitable for coadministration with other drugs. Herein is disclosed the evolution of the synthetic strategy to from the original medicinal chemistry route, designed for late diversification, to a convergent and robust development synthesis. The chiral centers in the P4 fragment were constructed by an asymmetric chelated Claisen rearrangement in the presence of quinidine as the chiral ligand. Identification of advanced crystalline intermediates enabled practical supply of key intermediates. Finally, macrocyclization was carried out at 10% weight concentration by a general and unconventional “slow release” concept.     

Diverse Brain Myeloid Expression Profiles Reveal Distinct Microglial Activation States and Aspects of Alzheimer’s Disease Not Evident in Mouse Models

1. Download high-res image (167KB)
2. Download full-size image

     

循环水养殖系统中凡纳滨对虾肠道微生物对三种复合益生菌制剂的响应

【目的】在循环养殖系统中应用不同的复合益生菌制剂,探讨凡纳滨对虾肠道菌群结构特征及免疫水平发生的变化。【方法】30 d养殖周期结束后,通过平板计数法分析肠道细菌总数和弧菌总数;基于高通量测序技术分析肠道样品V3+V4区菌群特征;采用实时荧光定量PCR技术分析免疫相关因子TLR1和Dorsal基因表达水平,阐述益生菌制剂应用的意义。【结果】益生菌制剂的应用降低了凡纳滨对虾肠道中细菌总数,抑制弧菌的生长,间接预防疾病的发生。不同益生菌制剂从不同程度上优化了凡纳滨对虾肠道菌群结构,提高高质量序列和有效OTU数量,Chao1、Simpson、Shannon指数显示了丰富度和多样性变化,复合益生菌制剂3效果较好。同时,菌群结构得到优化,其中益生菌制剂1组对拟杆菌门含量百分比产生显著影响。Toll受体TLR1和Toll通路中的Dorsal基因m RNA表达受到益生菌制剂的影响,1、3组促进了TLR 1表达,1、2、3组都促进了Dorsal基因表达。【结论】在循环水养殖系统中添加益生菌制剂可优化凡纳滨对虾肠道菌群特征,提高免疫水平,为病害防控和健康养殖提供理论依据。     

Responses of arbuscular mycorrhizal symbionts to contrasting environments: field evidence along a Tibetan elevation gradient

Plant adaptation to alpine ecosystems is not fully explained by plant physiological and morphological traits. Arbuscular mycorrhizal (AM) associations may be involved in mediating plant performance in response to environmental differences. Little is known, however, as to whether or not a close relationship exists between plant performance and arbuscular mycorrhizal fungus status across environmental gradients. We conducted a field investigation of the performance of six plant species and their associated AM fungi along higher and lower elevation gradients on Mount Segrila in Tibet. In most of our species, we observed higher shoot and inflorescence biomass production and a lower root-to-shoot ratio in the populations at those sites where the species was dominant (intermediate elevation sites) than in populations sampled at the limits of the distribution. The elevation pattern of root colonization differed with plant species on both gradients, and the extraradical hypha development of most species showed a unimodal pattern as did plant growth. The relationship between plant and fungus traits shows that AM fungus development generally matched host plant performance on the lower elevation gradient but not on the higher elevation gradient. This study provides evidence that plant distribution and productivity were significantly related to root and soil colonization by AM fungi, especially under less physically stressful conditions.     

粘型小麦不育系育性恢复性的细胞遗传学研究

利用5个粘性不育系分别与中国春的二体,1B重双端体及1B°1D^Ⅳ缺四体杂交,调查其F1的育性及其F1减数分裂中期Ⅰ的染色体配对情况和后期Ⅰ出现落后染色体的细胞频率。结果表明：（1）5个不育系与中国春二体杂交F1的自交结实率存在明显差异。中国春的1B重双端体使5个不育系的自交结实率大幅度下降,中国春的1B°1DⅣ缺四体使各不育系表现全不育;（2）5个不育系和3个父本杂交F1减数分裂中期Ⅰ出现单价体细胞的频率与其后期Ⅰ出现落后染色体细胞的频率不存在直接相关;（3）5个不育系与中国春二体的杂交F1自交结实率与其减数分裂中期Ⅰ出现单价体细胞的频率呈正相关。相关系数为0.9695**,与后期Ⅰ出现落后染色体细胞的频率不直接相关。     

长尾小蜂属Torymus二新种记述(膜翅目:长尾小蜂科)

记述采自浙江、江苏、福建和贵州的长尾小蜂属Torymus Dalman 2新种：浙江长尾小蜂Torymus zhejiangensis,sp．nov．和斑翅长尾小蜂Torymus maculatus．sp．nov．。模式标本保存在浙江大学农业与生物技术学院应用昆虫研究所。     

The Role of the Liquid Phase in the Degradation of Toluene and m‐Cresol within a Biofilm Trickle‐Bed Reactor

The degradation of toluene and m‐cresol in a biofilm trickle‐bed reactor was experimentally and theoretically investigated. Degradation is the result of the cooperation between suspended and immobilized microorganisms in the trickling film and the biofilm. The role of the trickling film is that of a barrier for mass transfer to the biofilm or that of an additional reaction space. This is the result of physical availability of pollutants to the liquid phase as well as co‐substrate degradation of inherent biomass. An instationary reactor balance model is presented. In addition to this the change in wetting behavior of carrier surface due to biofilm formation is discussed. A partial wetting of biofilm surface by rivulets of the trickling film is proposed. The model was verified by experimental data. The different reactor operation modes denoted as biofilm regime versus trickling film regime for the chosen pollutant system were expressed in terms of dimensionless reactions and transfer numbers. It is shown that the volumetric reaction rates for toluene in a trickling film regime reaches values twice as high as that of a biofilm regime due to the presence of the second substrate m‐cresol. The limiting step in both cases is the mass transfer of oxygen to bacteria in the biofilm or trickling film.