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121.
Giulia Di Rocco Gianantonio Battistuzzi Carlo Augusto Bortolotti Marco Borsari Erika Ferrari Stefano Monari Marco Sola 《Journal of biological inorganic chemistry》2011,16(3):461-471
The 16-kDa diheme cytochrome c from the bacterium Shewanella baltica OS155 (Sb-DHC) was cloned and expressed in Escherichia coli and investigated through UV–vis, magnetic circular dichroism, and 1H NMR spectroscopies and protein voltammetry. The model structure was obtained by means of comparative modeling using the
X-ray structure of Rhodobacter sphaeroides diheme cytochrome c (Rs-DHC) (with a 37% pairwise sequence identity) as a template. Sb-DHC folds into two distinct domains, each containing one
heme center with a bis-His axial ligation. Both secondary and tertiary structures of the N-terminal domain resemble those
of class I cytochrome c, displaying three α-helices and a compact overall folding. The C-terminal domain is less helical than the corresponding domain
of Rs-DHC. The two heme groups are bridged by Tyr26 in correspondence with the shortest edge-to-edge distance, a feature which
would facilitate fast internal electron transfer. The electronic properties of the two prosthetic centers are equivalent and
sensitive to two acid–base equilibria with pK
a values of approximately 2.4 and 5, likely corresponding to protonation and detachment of the axial His ligands from the heme
iron and a pH-linked conformational change of the protein, respectively. Reduction potentials of −0.144 and −0.257 V (vs.
the standard hydrogen electrode), were determined for the C- and N-terminal heme groups, respectively. An approach based on
the extended Debye–Hückel equation was applied for the first time to a two-centered metalloprotein and was found to reproduce
successfully the ionic strength dependence of E°′. 相似文献
122.
123.
Lactoferrin (LF) is an iron-binding glycoprotein of the transferrin family, today known to have multifunctional physiological
activities. In humans, under normal conditions, LF has been found in blood, mucosal secretions, gastrointestinal fluids, urine
and mostly in milk and colostrum. The first pioneering immunohistochemical report about LF distribution in human tissues dated
in 1978; successively, many studies have been performed to analyze the LF immunohistochemical pattern in different normal
and neoplastic tissues. In this review, we present data from literature concerning the evidence of LF in tumors together with
those by us obtained during more than 25 years; the immunohistochemical applications to human neoplastic tissues have been
done to investigate the LF pathogenetic role as well as its activity in cancer. After a systematic analysis of LF immunoreactivity
in different human districts, a possible explanation for its presence and function has been modulated for each site or tissue,
according to experimental evidences obtained either by in vivo as well as by in vitro studies. 相似文献
124.
Synthesis and evaluation of quinoxaline derivatives as potential influenza NS1A protein inhibitors 总被引:1,自引:0,他引:1
You L Cho EJ Leavitt J Ma LC Montelione GT Anslyn EV Krug RM Ellington A Robertus JD 《Bioorganic & medicinal chemistry letters》2011,21(10):3007-3011
A library of quinoxaline derivatives were prepared to target non-structural protein 1 of influenza A (NS1A) as a means to develop anti-influenza drug leads. An in vitro fluorescence polarization assay demonstrated that these compounds disrupted the dsRNA-NS1A interaction to varying extents. Changes of substituent at positions 2, 3 and 6 on the quinoxaline ring led to variance in responses. The most active compounds (35 and 44) had IC50 values in the range of low micromolar concentration without exhibiting significant dsRNA intercalation. Compound 44 was able to inhibit influenza A/Udorn/72 virus growth. 相似文献
125.
Molecular replacement (MR) is widely used for addressing the phase problem in X-ray crystallography. Historically, crystallographers have had limited success using NMR structures as MR search models. Here, we report a comprehensive investigation of the utility of protein NMR ensembles as MR search models, using data for 25 pairs of X-ray and NMR structures solved and refined using modern NMR methods. Starting from NMR ensembles prepared by an improved protocol, FindCore, correct MR solutions were obtained for 22 targets. Based on these solutions, automatic model rebuilding could be done successfully. Rosetta refinement of NMR structures provided MR solutions for another two proteins. We also demonstrate that such properly prepared NMR ensembles and X-ray crystal structures have similar performance when used as MR search models for homologous structures, particularly for targets with sequence identity >40%. 相似文献
126.
Riccio A Mangiapia G Giordano D Flagiello A Tedesco R Bruno S Vergara A Mazzarella L di Prisco G Pucci P Paduano L Verde C 《IUBMB life》2011,63(5):346-354
In vitro, and possibly in vivo, hemoglobin polymerization and red blood cell sickling appear to be widespread in codfish. In this article, we show that the hemoglobins of the two Arctic fish Lycodes reticulatus and Gadus morhua also have the tendency to polymerize, as monitored by dynamic light scattering experiments. The elucidation of the primary structure of the single hemoglobin of the zoarcid L. reticulatus shows the presence of a large number of cysteyl residues in α and β chains. Their role in eliciting the ability to produce polymers was also addressed by MALDI-TOF and TOF-TOF mass spectrometry. The G.morhua globins are also rich in Cys, but unlike in L. reticulatus, polymerization does not seem to be disulfide driven. The widespread occurrence of the polymerization phenomenon displayed by hemoglobins of Arctic fish supports the hypothesis that this feature may bea response to stressful environmental conditions. 相似文献
127.
128.
Huber D Rajagopalan N Preissler S Rocco MA Merz F Kramer G Bukau B 《Molecular cell》2011,41(3):343-353
In Escherichia coli, translocation of exported proteins across the cytoplasmic membrane is dependent on the motor protein SecA and typically begins only after synthesis of the substrate has already been completed (i.e., posttranslationally). Thus, it has generally been assumed that the translocation machinery also recognizes its protein substrates posttranslationally. Here we report a specific interaction between SecA and the ribosome at a site near the polypeptide exit channel. This interaction is mediated by conserved motifs in SecA and ribosomal protein L23, and partial disruption of this interaction in?vivo by introducing mutations into the genes encoding SecA or L23 affects the efficiency of translocation by the posttranslational pathway. Based on these findings, we propose that SecA could interact with its nascent substrates during translation in order to efficiently channel them into the "posttranslational" translocation pathway. 相似文献
129.
Karanicolas J Corn JE Chen I Joachimiak LA Dym O Peck SH Albeck S Unger T Hu W Liu G Delbecq S Montelione GT Spiegel CP Liu DR Baker D 《Molecular cell》2011,42(2):250-260
The de novo design of protein-protein interfaces is a stringent test of our understanding of the principles underlying protein-protein interactions and would enable unique approaches to biological and medical challenges. Here we describe a motif-based method to computationally design protein-protein complexes with native-like interface composition and interaction density. Using this method we designed a pair of proteins, Prb and Pdar, that heterodimerize with a Kd of 130 nM, 1000-fold tighter than any previously designed de novo protein-protein complex. Directed evolution identified two point mutations that improve affinity to 180 pM. Crystal structures of an affinity-matured complex reveal binding is entirely through the designed interface residues. Surprisingly, in the in vitro evolved complex one of the partners is rotated 180° relative to the original design model, yet still maintains the central computationally designed hotspot interaction and preserves the character of many peripheral interactions. This work demonstrates that high-affinity protein interfaces can be created by designing complementary interaction surfaces on two noninteracting partners and underscores remaining challenges. 相似文献
130.