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81.
Pla M La Paz JL Peñas G García N Palaudelmàs M Esteve T Messeguer J Melé E 《Transgenic research》2006,15(2):219-228
Maize is one of the main crops worldwide and an increasing number of genetically modified (GM) maize varieties are cultivated
and commercialized in many countries in parallel to conventional crops. Given the labeling rules established e.g. in the European
Union and the necessary coexistence between GM and non-GM crops, it is important to determine the extent of pollen dissemination
from transgenic maize to other cultivars under field conditions. The most widely used methods for quantitative detection of
GMO are based on real-time PCR, which implies the results are expressed in genome percentages (in contrast to seed or grain
percentages). Our objective was to assess the accuracy of real-time PCR based assays to accurately quantify the contents of
transgenic grains in non-GM fields in comparison with the real cross-fertilization rate as determined by phenotypical analysis.
We performed this study in a region where both GM and conventional maize are normally cultivated and used the predominant
transgenic maize Mon810 in combination with a conventional maize variety which displays the characteristic of white grains
(therefore allowing cross-pollination quantification as percentage of yellow grains). Our results indicated an excellent correlation
between real-time PCR results and number of cross-fertilized grains at Mon810 levels of 0.1–10%. In contrast, Mon810 percentage
estimated by weight of grains produced less accurate results. Finally, we present and discuss the pattern of pollen-mediated
gene flow from GM to conventional maize in an example case under field conditions. 相似文献
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Giovanni Bacci Patrizia Paganin Loredana Lopez Chiara Vanni Claudia Dalmastri Cristina Cantale Loretta Daddiego Gaetano Perrotta Daniela Dolce Patrizia Morelli Vanessa Tuccio Alessandra De Alessandri Ersilia Vita Fiscarelli Giovanni Taccetti Vincenzina Lucidi Annamaria Bevivino Alessio Mengoni 《PloS one》2016,11(6)
Chronic airway infection is a hallmark feature of cystic fibrosis (CF) disease. In the present study, sputum samples from CF patients were collected and characterized by 16S rRNA gene-targeted approach, to assess how lung microbiota composition changes following a severe decline in lung function. In particular, we compared the airway microbiota of two groups of patients with CF, i.e. patients with a substantial decline in their lung function (SD) and patients with a stable lung function (S). The two groups showed a different bacterial composition, with SD patients reporting a more heterogeneous community than the S ones. Pseudomonas was the dominant genus in both S and SD patients followed by Staphylococcus and Prevotella. Other than the classical CF pathogens and the most commonly identified non-classical genera in CF, we found the presence of the unusual anaerobic genus Sneathia. Moreover, the oligotyping analysis revealed the presence of other minor genera described in CF, highlighting the polymicrobial nature of CF infection. Finally, the analysis of correlation and anti-correlation networks showed the presence of antagonism and ecological independence between members of Pseudomonas genus and the rest of CF airways microbiota, with S patients showing a more interconnected community in S patients than in SD ones. This population structure suggests a higher resilience of S microbiota with respect to SD, which in turn may hinder the potential adverse impact of aggressive pathogens (e.g. Pseudomonas). In conclusion, our findings shed a new light on CF airway microbiota ecology, improving current knowledge about its composition and polymicrobial interactions in patients with CF. 相似文献
84.
The discoid thallus of Erythrocladia irregularis is the result of a pattern of cellular divisions expressed by mono-and endospores; the latter are described for the first time in Erythrocladia. In nutrient enriched growth conditions the discoid thallus becomes a shapeless aggregate of unicells with a wrinkled wall surface, whose plane of division is unpredictable. The cells are able to produce monosporangia with a curved wall or they form eight-celled endosporangia. Chloroplasts have an internal pyrenoid, as is characteristic of the Erythropeltidaceae. The observation that E. irregularis can form either a colonial cluster of unicells or a discoid thallus would lead to the assignment of the genus to the Porphyridiales; however, since this order is reserved to organisms in which only the unicellular organization can be expressed, it is suggested to maintain Erythrocladia in the Erythropeltidales. 相似文献
85.
Forouhar F Kuzin A Seetharaman J Lee I Zhou W Abashidze M Chen Y Yong W Janjua H Fang Y Wang D Cunningham K Xiao R Acton TB Pichersky E Klessig DF Porter CW Montelione GT Tong L 《Journal of structural and functional genomics》2007,8(2-3):37-44
Structural genomics efforts have produced structural information, either directly or by modeling, for thousands of proteins
over the past few years. While many of these proteins have known functions, a large percentage of them have not been characterized
at the functional level. The structural information has provided valuable functional insights on some of these proteins, through
careful structural analyses, serendipity, and structure-guided functional screening. Some of the success stories based on
structures solved at the Northeast Structural Genomics Consortium (NESG) are reported here. These include a novel methyl salicylate
esterase with important role in plant innate immunity, a novel RNA methyltransferase (H. influenzae yggJ (HI0303)), a novel spermidine/spermine N-acetyltransferase (B. subtilis PaiA), a novel methyltransferase or AdoMet binding protein (A. fulgidus AF_0241), an ATP:cob(I)alamin adenosyltransferase (B. subtilis YvqK), a novel carboxysome pore (E. coli EutN), a proline racemase homolog with a disrupted active site (B. melitensis BME11586), an FMN-dependent enzyme (S. pneumoniae SP_1951), and a 12-stranded β-barrel with a novel fold (V. parahaemolyticus VPA1032). 相似文献
86.
Effect of ice melting on bacterial carbon fluxes channelled by viruses and protists in the Arctic Ocean 总被引:1,自引:0,他引:1
Julia A. Boras M. Montserrat Sala Jesus M. Arrieta Elisabet L. Sà Jorge Felipe Susana Agustí Carlos M. Duarte Dolors Vaqué 《Polar Biology》2010,33(12):1695-1707
During the last few years, extensive sea ice melting in the Arctic due to climate change has been detected, which could potentially
modify the organic carbon fluxes in these waters. In this study, the effect of sea ice melting on bacterial carbon channelling
by phages and protists has been evaluated in the northern Greenland Sea and Arctic Ocean. Grazing on bacteria by protists
was evaluated using the FLB disappearance method. Lysis of bacteria due to viral infections was measured using the virus reduction
approach. Losses of bacterial production caused by protists (PMMBP) dominated losses caused by viruses (VMMBP) throughout the study. Lysogenic viral production was detected in 7 out of 21 measurements and constituted from 33.9 to 100.0%
of the total viral production. Significantly higher PMMBP and lower VMMBP were detected in waters affected by ice melting compared with unaffected waters. Consequently, significantly more bacterial
carbon was channelled to the higher trophic levels in affected waters (13.05 ± 5.98 μgC l−1 day−1) than in unaffected waters (8.91 ± 8.33 μgC l−1 day−1). Viruses channelled 2.63 ± 2.45 μgC l−1 day−1 in affected waters and 4.27 ± 5.54 μgC l−1 day−1 in unaffected waters. We conclude that sea ice melting in the Arctic could modify the carbon flow through the microbial food
web. This process may be especially important in the case of massive sea ice melting due to climate change. 相似文献
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Alarcón M Vargas P Sáez L Molero J Aldasoro JJ 《Molecular phylogenetics and evolution》2012,63(3):866-876
This paper examines the phylogeny of Erodium subsect. Petraea, a group of six morphologically and genetically very similar species from the mountains of the western Mediterranean. Combined trnL-F-ITS analysis was unable to determine the phylogenetic relationships of these species owing to sequence similarity. AFLP fragment analysis showed different populations to cluster in six closely related phylogroups that partially coincided with morphological species. In the Iberian Peninsula, high temperatures during interstadial periods probably impeded the survival of these species at low altitudes, and their populations may have been forced to migrate northward within Iberia or remain isolated on high mountains. AFLP variation suggests that this might have led to their differentiation into groups and speciation during interglacials, but it probably also provided the basis for recurrent recolonisations and the mixing of neighbouring populations at the last glacial maxima. The genetic diversity of the two Erodium lineages suggests two migration episodes took place from southern Iberia towards the north, with one lineage migrating via western Iberia and the other via eastern Iberia. The patterns of genetic diversity observed in populations of 56 European species (27 genera) leads to the hypothesis that disparate proportions of unique polymorphic fragments are the result of the evolutionary histories of their mountain populations irrespective of the currently recognised species. 相似文献
90.