Characterization of polymorphic microsatellite markers for the endangered Malagasy radiated tortoise (Geochelone radiata)

The radiated tortoise (Geochelone radiata) is an endangered endemic species from Madagascar that inhabits the semiarid spiny forest of the southern part of the island. Habitat destruction and illegal harvesting greatly threaten this species, as attested by the significant reduction of its distribution area in the past 30 years. In order to undertake appropriate conservation actions, it is essential to acquire a better knowledge of its genetic structure. For this study, 145 blood samples were collected from three populations of radiated tortoises in southwestern Madagascar. Eight microsatellite loci were found to be polymorphic, and allelic diversity and observed heterozygosity were high for all markers.     

Accelerated Nitrate Uptake in Wheat Seedlings: Effects of Ammonium and Nitrite Pretreatments and of 6-Methylpurine and Puromycin

The experiments reported herein had two objectives. One was to determine if the slow rate of nitrate uptake which occurs upon initial exposure of nitrogen-depleted wheat (Triticum vulgare cv. Knox) plants to nitrate was the result of insufficient reduced nitrogen. The second was to determine the impact of restrictions in ribonucleic acid or protein synthesis on both nitrate uptake and nitrate reduction. Pretreatments of 14-day-old seedlings for a few hours in ammonium or nitrite did not result in an enhancement of the initial slow rate of nitrate uptake. Growth for two additional weeks in ammonium also failed to eliminate the induction period. The evidence indicates that the presence of nitrate, rather than a product of its reduction, was required to initiate development of the accelerated rate of nitrate uptake. Puromycin (400 μg ml^?1) and 6-methylpurine (0.5 mM) prevented development of the accelerated phase of nitrate uptake. With both compounds, the relative restriction of nitrate uptake was greater than that of nitrate reduction as revealed by incorporation of ¹⁵N from labeled nitrate into reduced forms. The proportion of reduction which occurred in the root system under the imposed treatments could not be delineated precisely, preventing an unequivocal determination of the extent to which the two processes are coupled in the root system. The data nevertheless indicate nitrate reduction was closely associated with nitrate uptake. Accumulation of nitrate in the shoots was markedly restricted in presence of 6 methylpurine. This effect most likely was a result of a severe restriction in the translocation of nitrate into the xylem, rather than an increase in the reduction rate in the shoots.     

Environmental and socio‐economic factors related to urban bird communities

Urban fauna communities may be strongly influenced by environmental and socio‐economic factors, but the relative importance of these factors is poorly known. Most research on urban fauna has been conducted in large cities and it is unclear if the patterns found in these locations coincide with those from smaller human settlements. We examined the relative importance of environmental and socio‐economic factors in explaining variation in urban bird communities across 72 neighbourhoods in 18 regional towns in south‐eastern Australia. Native bird species richness varied from 6 to 32 across neighbourhoods and was higher in neighbourhoods with more nectar‐rich plants. Variation in bird species diversity across neighbourhoods was also strongly positively related to the density of nectar‐rich plants, but was higher also in neighbourhoods with higher socio‐economic status (reflecting higher levels of disposal income, education and home ownership). The density of native birds across neighbourhoods per season varied from 1 to 15 birds per hectare and was lower in neighbourhoods with a greater cover of impervious surfaces. The density of exotic birds (introduced to Australia) per season also varied across neighbourhoods (0–13 birds per hectare) and was lower in neighbourhoods with more nectar‐rich plants and higher in neighbourhoods with greater impervious surface cover. Our results demonstrated that the vegetation characteristics of household gardens, along streetscapes and in urban parklands had a strong influence on the richness and diversity of urban bird communities. The density of native and exotic birds varied primarily in response to changes in the built environment (measured through impervious surface cover). Socio‐economic factors had relatively little direct influence on urban birds, but neighbourhood socio‐economics may influence bird communities indirectly through the positive relationship between socio‐economic status and vegetation cover recorded in our study area.     

Effects of spawning Pacific salmon on the isotopic composition of biota differ among southeast Alaska streams

1. Adult Pacific salmon (Oncorhynchus spp.) transport marine nutrients to fresh waters and disturb sediments during spawning. The relative importance of nutrient fertilisation and benthic disturbance by salmon spawners can be modulated by environmental conditions (e.g. biological, chemical and physical conditions in the catchment, including human land use). 2. To determine the importance of the environmental context in modifying the uptake and incorporation of salmon‐derived material into stream biota, we measured the nitrogen (δ¹⁵N) and carbon (δ¹³C) isotopic composition of benthic algae (i.e. epilithon) and juvenile coho salmon (Oncorhynchus kisutch) in seven streams across a timber‐harvest gradient (8–69% catchment area harvested), both before and during the salmon run. Conditional bootstrap modelling simulations were used to assess variability in the response of epilithon and juvenile coho salmon to spawning salmon. 3. In response to spawning salmon, epilithon exhibited enrichment in both δ¹⁵N (mean: 1.5‰) and δ¹³C (2.3‰). Juvenile coho were also enriched in both δ¹⁵N (0.7‰) and δ¹³C (1.4‰). Conditional bootstrap models indicate decreased variation in data as spatial replication increases, suggesting that the number of study sites can influence the results of Pacific salmon isotope studies. 4. Epilithon isotopic enrichment was predicted by environmental conditions, with δ¹⁵N enrichment predicted by stream temperature and timber harvest (R² = 0.87) and δ¹³C enrichment by discharge, sediment size, timber harvest and spawner density (R² = 0.96). Furthermore, we found evidence for a legacy effect of salmon spawners, with pre‐spawner δ¹⁵N and δ¹³C of both epilithon and juvenile coho predicted by salmon run size in the previous year. 5. Our results show that the degree of incorporation of salmon‐derived nitrogen and carbon differs among streams. Furthermore, the environmental context, including putative legacy effects of spawning salmon, can influence background isotopic concentrations and utilisation of salmon‐derived materials in southeast Alaska salmon streams. Future studies should consider the variation in isotopic composition of stream biota when deciding on the number of study sites and samples needed to generate meaningful results.     

On the 13C/12C isotopic signal of day and night respiration at the mesocosm level

While there is currently intense effort to examine the ¹³C signal of CO₂ evolved in the dark, less is known on the isotope composition of day‐respired CO₂. This lack of knowledge stems from technical difficulties to measure the pure respiratory isotopic signal: day respiration is mixed up with photorespiration, and there is no obvious way to separate photosynthetic fractionation (pure c_i/c_a effect) from respiratory effect (production of CO₂ with a different δ¹³C value from that of net‐fixed CO₂) at the ecosystem level. Here, we took advantage of new simple equations, and applied them to sunflower canopies grown under low and high [CO₂]. We show that whole mesocosm‐respired CO₂ is slightly ¹³C depleted in the light at the mesocosm level (by 0.2–0.8‰), while it is slightly ¹³C enriched in darkness (by 1.5–3.2‰). The turnover of the respiratory carbon pool after labelling appears similar in the light and in the dark, and accordingly, a hierarchical clustering analysis shows a close correlation between the ¹³C abundance in day‐ and night‐evolved CO₂. We conclude that the carbon source for respiration is similar in the dark and in the light, but the metabolic pathways associated with CO₂ production may change, thereby explaining the different ¹²C/¹³C respiratory fractionations in the light and in the dark.     

Hazards Affecting Grizzly Bear Survival in the Greater Yellowstone Ecosystem

Abstract: During the past 2 decades, the grizzly bear (Ursus arctos) population in the Greater Yellowstone Ecosystem (GYE) has increased in numbers and expanded its range. Early efforts to model grizzly bear mortality were principally focused within the United States Fish and Wildlife Service Grizzly Bear Recovery Zone, which currently represents only about 61% of known bear distribution in the GYE. A more recent analysis that explored one spatial covariate that encompassed the entire GYE suggested that grizzly bear survival was highest in Yellowstone National Park, followed by areas in the grizzly bear Recovery Zone outside the park, and lowest outside the Recovery Zone. Although management differences within these areas partially explained differences in grizzly bear survival, these simple spatial covariates did not capture site-specific reasons why bears die at higher rates outside the Recovery Zone. Here, we model annual survival of grizzly bears in the GYE to 1) identify landscape features (i.e., foods, land management policies, or human disturbances factors) that best describe spatial heterogeneity among bear mortalities, 2) spatially depict the differences in grizzly bear survival across the GYE, and 3) demonstrate how our spatially explicit model of survival can be linked with demographic parameters to identify source and sink habitats. We used recent data from radiomarked bears to estimate survival (1983–2003) using the known-fate data type in Program MARK. Our top models suggested that survival of independent (age ≥ 2 yr) grizzly bears was best explained by the level of human development of the landscape within the home ranges of bears. Survival improved as secure habitat and elevation increased but declined as road density, number of homes, and site developments increased. Bears living in areas open to fall ungulate hunting suffered higher rates of mortality than bears living in areas closed to hunting. Our top model strongly supported previous research that identified roads and developed sites as hazards to grizzly bear survival. We also demonstrated that rural homes and ungulate hunting negatively affected survival, both new findings. We illustrate how our survival model, when linked with estimates of reproduction and survival of dependent young, can be used to identify demographically the source and sink habitats in the GYE. Finally, we discuss how this demographic model constitutes one component of a habitat-based framework for grizzly bear conservation. Such a framework can spatially depict the areas of risk in otherwise good habitat, providing a focus for resource management in the GYE.     

Environmental Factors Affecting Productivity of Brown-Headed Nuthatches

Abstract: Understanding the link between habitat use and components of fitness can yield useful insight into the environmental conditions necessary for population maintenance and can help promote effective habitat management. This information is especially important for species that are in decline or otherwise of conservation concern. Populations of brown-headed nuthatches (Sitta pusilla), an obligate cavity nester, have declined throughout their range, primarily due to extensive habitat loss and degradation. To help guide habitat management for this species, we identified habitat features associated with variation in the number of offspring fledged within 2 populations in southern Florida, USA. The most important predictor of productivity was the date on which a nest attempt began, with earlier nests producing more fledglings. The number of large pine (Pinus elliottii var. densa) snags and, to a lesser extent, the number of small pine trees surrounding a nest site were positively associated with productivity. We recommend that land managers in southern Florida focus on providing abundant large pine snags because doing so will increase productivity and also may increase nest-site availability and the percentage of individuals that breed each year. Prescribed burning may be an effective way to increase the abundance of large pine snags; however, land managers should exercise caution when doing so because of the trade-off between snag recruitment and snag consumption that accompanies the use of fire. We lack the data required to predict the fire-return interval that optimizes this trade-off, but until these data are available we recommend increasing the spatial heterogeneity in fire-return interval and lengthening the fire-return interval in some areas to 5-6 years.     

Colour change ability and its effect on prey capture success in female Misumenoides formosipes crab spiders

1. Changing between white and yellow body colour in certain crab spider species has been interpreted as an adaptation for matching the background colour where they hunt and thereby remaining cryptic to prey and/or their own predators. The potential costs and benefits of colour change in female Misumenoides formosipes Walckenaer were investigated via assessment of prey opportunities and capture success, in conjunction with the tendency for and rate of colour change on different backgrounds. 2. It was tested whether being matched or mismatched to their background affected foraging by moving females between white and yellow inflorescences. Female colour was quantified in digital photos using the Lab colour space component of Adobe photoshop , providing the first empirical assessment of the rate of colour change for a crab spider species. 3. Insect visits (potential prey) on inflorescences with and without spiders and prey capture success with females matched and mismatched to their background were quantified. 4. Yellow females abandoned white inflorescences, whereas white females remained on and underwent colour change on yellow inflorescences. This difference supported the notion that the costs of colour change differ depending on the starting colour. Female departures from white flowers were apparently not due to a lack of insect visitation, as white inflorescences had higher visitation rates than did yellow inflorescences, even in the presence of spiders. 5. An increase in the prey capture success of females who transitioned from white to yellow body colour on a yellow background supported the hypothesis that colour matching functions to deceive prey.     

Effects of fishing and acidification‐related benthic mortality on the southeast Australian marine ecosystem

Oceanic uptake of anthropogenic carbon dioxide (CO₂) is altering the carbonate chemistry of seawater, with potentially negative consequences for many calcifying marine organisms. At the same time, increasing fisheries exploitation is impacting on marine ecosystems. Here, using increased benthic‐invertebrate mortality as a proxy for effects of ocean acidification, the potential impact of the two stressors of fishing and acidification on the southeast Australian marine ecosystem to year 2050 was explored. The individual and interaction effects of the two stressors on biomass and diversity were examined for the entire ecosystem and for regional assemblages. For 61 functional groups or species, the cumulative effects of moderate ocean acidification and fishing were additive (30%), synergistic (33%), and antagonistic (37%). Strong ocean acidification resulted in additive (22%), synergistic (40%), and antagonistic (38%) effects. The greatest impact was on the demersal food web, with fishing impacting predation and acidification affecting benthic production. Areas that have been subject to intensive fishing were the most susceptible to acidification effect, although fishing also mitigated some of the decline in biodiversity observed with moderate acidification. The model suggested that ocean acidification and long‐term fisheries exploitation could act synergistically with the increasing sensitivity to change from long‐term (decades) fisheries exploitation potentially causing unexpected restructuring of the pelagic and demersal food webs. Major regime shifts occur around year 2040. Greater focus is needed on how differential fisheries exploitation of marine resources may exacerbate or accelerate effects of environmental changes such as ocean acidification.