The Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) from Vibrio cholerae enhances insertion of FeS in overproduced NqrF subunit

The Na⁺-translocating NADH:quinone oxidoreductase (Na⁺-NQR) from Vibrio cholerae is a membrane-bound, respiratory Na⁺ pump. Its NqrF subunit contains one FAD and a [2Fe–2S] cluster and catalyzes the initial oxidation of NADH. A soluble variant of NqrF lacking its hydrophobic, N-terminal helix (NqrF′) was produced in V. cholerae wild type and nqr deletion strain. Under identical conditions of growth and induction, the yield of NqrF′ increased by 30% in the presence of the Na⁺-NQR. FAD-containing NqrF′ species with or without the FeS cluster were observed, indicating that assembly of the FeS center, but not insertion of the flavin cofactor, was limited during overproduction in V. cholerae. A comparison of these distinct NqrF′ species with regard to specific NADH dehydrogenase activity, pH dependence of activity and thermal inactivation showed that NqrF′ lacking the [2Fe–2S] cluster was less stable, partially unfolded, and therefore prone to proteolytic degradation in V. cholerae. We conclude that the overall yield of NqrF′ critically depends on the amount of fully assembled, FeS-containing NqrF′ in the V. cholerae host cells. The Na⁺-NQR is proposed to increase the stability of NqrF′ by stimulating the maturation of FeS centers.     

Trachemys medemi n. sp. from northwestern Colombia turns the biogeography of South American slider turtles upside down

South America was invaded by slider turtles (Trachemys spp.) twice, with one immigration wave estimated to have reached South America 8.6–7.1 million years ago (mya) and a second wave, 2.5–2.2 mya. The two widely disjunct South American subspecies of Trachemys dorbigni (northeastern and southern Brazil, Río de la Plata region of Argentina and Uruguay) are derived from the first dispersal pulse, while the two South American subspecies of Trachemys venusta (Colombia, Venezuela) originated from the second immigration event. We describe a new species of slider turtle from the lower Atrato river basin of Antioquia and Chocó departments, northwestern Colombia. This new species, the Atrato slider (Trachemys medemi n. sp.), is the first representative of the older immigration wave inhabiting northern South America. Using phylogenetic analyses of 3,242 bp of mitochondrial and 3,396 bp of nuclear DNA, we show that T. medemi is more closely related to T. dorbigni than to the geographically neighboring subspecies of Trachemys grayi and T. venusta from Central America and northern South America. The two subspecies of T. dorbigni are separated from the Atrato slider by the Andes and the Amazon Basin, and occur approximately 4,600 km and 3,700 km distant from T. medemi. According to molecular clock calculations, T. medemi diverged from the last common ancestor of the two subspecies of T. dorbigni during the Pliocene (4.1–2.8 mya), with T. dorbigni diversifying later (2.3–1.9 mya) in eastern South America beyond the Amazon basin. The divergence of the T. dorbigni subspecies overlaps with the estimated arrival of T. venusta in South America (2.5–2.2 mya). This time is characterized by massive climatic and environmental fluctuations with intermittent dispersal corridors in South America. According to their distribution, it seems likely that the ancestors of the extant subspecies of T. dorbigni dispersed along the eastern corridor, leaving a relict population northwest of the Andes with T. medemi. The distribution range of T. medemi is surrounded by taxa derived from the second southern range expansion of slider turtles, so that it can be concluded that T. venusta circumvented the habitats occupied by the ancestors of the Atrato slider when entering South America.     

Foraging strategies of granivorous dabbling ducks wintering in protected areas of the French Atlantic coast

Most important day-roosts for wintering ducks are protected, but the useof such sites as foraging habitats by Anatidae has received little attention. Westudied the foraging activity of wintering mallard (Anasplatyrhynchos) and teal (A. crecca) at fourprotected areas of the Marshes of Rochefort, western France. These species aregenerally nocturnal feeders, but they may expand their foraging time into thedaylight hours if they have high energy requirements. Our goal was to identifythe factors that lead dabbling ducks to increase their daily foraging time, sothat the management of protected sites used by ducks diurnally could be adjustedaccordingly. We demonstrate for the first time that, at the holarctic scale,granivorous ducks in colder habitats have longer diurnal foraging times. Inwestern France, foraging represented 37–60% of ducks' daily time-budget:16% of daylight hours and 85% of the night were spent foraging on average. Teal(350 g) fed longer per day than mallard (1100 g), andthis seemed to result from different migration strategies rather thandifferences in body mass. This study suggests that management of protected areasshould be adjusted to the climatic conditions of a wintering quarter and to themigration status of species in the duck community, so that adequate foragingsites are available for energetically stressed individuals to fulfil their dailyrequirements.     

The major extracellular protease of the nosocomial pathogen Stenotrophomonas maltophilia: characterization of the protein and molecular cloning of the gene.

Stenotrophomonas maltophilia is increasingly emerging as a multiresistant pathogen in the hospital environment. In immunosuppressed patients, these bacteria may cause severe infections associated with tissue lesions such as pulmonary hemorrhage. This suggests proteolysis as a possible pathogenic mechanism in these infections. This study describes a protease with broad specificity secreted by S. maltophilia. The gene, termed StmPr1, codes for a 63-kDa precursor that is processed to the mature protein of 47 kDa. The enzyme is an alkaline serine protease that, by sequence homology and enzymic properties, can be further classified as a new member of the family of subtilases. It differs from the classic subtilisins in molecular size, in substrate specificity, and probably in the architecture of the active site. The StmPr1 protease is able to degrade several human proteins from serum and connective tissue. Furthermore, pan-protease inhibitors such as alpha(1)-antitrypsin and alpha(2)-macroglobulin were unable to abolish the activity of the bacterial protease. The data support the interpretation that the extracellular protease of S. maltophilia functions as a pathogenic factor and thus could serve as a target for the development of therapeutic agents.     

A land cover map of South America

A digital land cover map of South America has been produced using remotely sensed satellite data acquired between 1995 and the year 2000. The mapping scale is defined by the 1 km spatial resolution of the map grid‐cell. In order to realize the product, different sources of satellite data were used, each source providing either a particular parameter of land cover characteristic required by the legend, or mapping a particular land cover class. The map legend is designed both to fit requirements for regional climate modelling and for studies on land cover change. The legend is also compatible with a wider, global, land cover mapping exercise, which seeks to characterize the world's land surface for the year 2000. As a first step, the humid forest domain has been validated using a sample of high‐resolution satellite images. The map demonstrates both the major incursions of agriculture into the remaining forest domains and the extensive areas of agriculture, which now dominate South America's grasslands.