Sequence of a cDNA for mouse thymidylate synthase reveals striking similarity with the prokaryotic enzyme

We report the nucleotide sequence of a cloned cDNA, pMTS-3, that contains a 1-kb insert corresponding to mouse thymidylate synthase (E.C. 2.1.1.45). The open reading frame of 921 nucleotides from the first AUG to the termination codon specifies a protein with a molecular mass of 34,962 daltons. The predicted amino acid sequence is 90% identical with that of the human enzyme. The mouse sequence also has an extremely high degree of similarity (as much as 55% identity) with prokaryotic thymidylate synthase sequences, indicating that thymidylate synthase is among the most highly conserved proteins studied to date. The similarity is especially pronounced (as much as 80% identity) in the 44-amino-acid region encompassing the binding site for deoxyuridylic acid. The cDNA sequence also suggests that mouse thymidylate synthase mRNA lacks a 3' untranslated region, since the termination codon, UAA, is followed immediately by a poly(A) segment.      

Thermodynamics and equilibrium sedimentation analysis of the close approach of DNA molecules and a molecular ordering transition

Measurement of the equilibrium distribution of persistence length fragments of DNA in high concentration in the ultracentrifuge shows that the reduced osmotic pressure rises much faster than linearly. From analysis of the data in terms of the Zimm cluster integral we infer that the net interactions between helices are purely repulsive at all distances. A theoretical equation of state derived from scaled particle theory with one adjustable parameter is in excellent agreement with the experimental data so long as the salt concentration is not excessively low. The parameter represents the hard-core radius in a simplified approximation to the potential function for the electrostatic repulsion between helices. Its value depends on the salt concentration, and it shrinks at high salt to a radius in close agreement with direct structural estimates. At a particular value of the osmotic pressure that is only slightly salt dependent, the solution undergoes a reversible transition to a denser, turbid, optically anisotropic phase. The relation between DNA volume fraction, including the electrostatic radius, at the transition point and the effective asymmetry of the molecules as a function of salt is in approximate correspondence with various theoretical treatments. However, the experimental function extrapolates to the correct limit for spherical particles. The work needed to bring DNA to a high concentration is estimated. The results suggest that the phase transition is first order.     

Tubes or cell sheet? A 3-D reconstruction of Halysis Høeg, 1932, from the Upper Ordovician of South China

Halysis is a microfossil found in Ordovician to Devonian shallow-marine carbonates. Up to now, it is only known from thin-sections, and therefore its three-dimensional shape and its systematic position are controversial. Halysis is described as a chain-like microfossil with a shape of the single “chain links” ranging from circular to rounded rectangular. Given that Halysis commonly co-occurs with calcareous algae, it is assumed to also be an alga. Interpretations of the anatomy propose a filiform or tubiform shape. Even a unistratose sheet of cells has been discussed. Since Halysis is comparatively rare, its shape has not been resolved up to now. For the present study, 52 out of several hundred specimens from an Upper Ordovician shallow-water limestone of South China have been investigated in detail, which for the first time offers the opportunity to analyze a great number of sections through Halysis. A three-dimensional computer model of Halysis has been constructed in order to set up planes sectioning the model. These simulated sections have been compared to those from Halysis in thin-sections. The results show that Halysis represents a microfossil with a morphology consisting of parallel juxtaposed, partly branching tubes. A single sheet of cells, which was recently proposed as shape of Halysis, can clearly be excluded.     

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