High sensitivity detection of molecular recognition using magnetically labelled biomolecules and magnetoresistive sensors

Small magnetoresistive spin valve sensors (2 x 6 microm(2)) were used to detect the binding of single streptavidin functionalized 2 microm magnetic microspheres to a biotinylated sensor surface. The sensor signals, using 8 mA sense current, were in the order of 150-400 microV for a single microsphere depending on sensor sensitivity and the thickness of the passivation layer over the sensor surface. Sensor saturation signals were 1-2 mV representing an estimated 6-20 microspheres, with a noise level of approximately 10 microV. The detection of biomolecular recognition for the streptavidin-biotin model was shown using both single and differential sensor architectures. The signal data compares favourably with previously reported signals for high numbers of magnetic microspheres detected using larger multilayered giant magnetoresistance sensors. A wide range of applications is foreseen for this system in the development of biochips, high sensitivity biosensors and the detection of single molecules and single molecule interactions.     

Novel Transposable Elements in Solanaceae: Evolutionary Relationships among Tnt1-related Sequences in Wild Petunia Species

Transposable elements (TEs) are widespread in eukaryotic genomes. The diversity and abundance of TEs are highly variable among species and may correspond to particular relationships between a species and the elements in its genome. There are often many TE families within a single genome; thus, the amplification of one TE family may influence the amplification of other families. LTR retrotransposons (LTR-RTs) are extremely abundant in flowering plants, and Tnt1 is one of the most well known. First characterized in tobacco, Tnt1-related sequences have since been reported in other genera of Solanaceae. In this study, we investigated the profile of Tnt1-related sequences among the species of three Solanaceae genera through genomic amplification and the cloning of partial sequences. The analysis of these sequences revealed high levels of diversity and showed that the sequences are not as closely related to Tnt1 as had been previously hypothesized. The classification of the sequences yielded ten possible families of LTR-RTs, which are, in addition to Tnt1, all members of the Tork clade within the Copia superfamily. However, the sequences did not follow the phylogeny of the species and were not homogeneously distributed. One family includes only sequences of taxa that inhabit dry areas. These findings were consistent with previous suggestions of an early association of Tnt1-related elements with the evolution of several Solanaceae species.     

Effects of inoculation of plant-growth promoting bacteria on Ni uptake by Indian mustard

In this study, among a collection of Ni resistant bacterial strains isolated from serpentine soil, two plant growth promoting bacteria (PGPB), Ps29C and Bm4C were selected based on their ability to utilize ACC as the sole N source and promote seedling growth in roll towel assay. The Ni resistant PGPB, Ps29C and Bm4C were characterized as Pseudomonas sp. and Bacillus megaterium, respectively, on the basis of their 16s rDNA sequences. Assessment of the parameters of plant growth promotion revealed the intrinsic ability of the strains for the production of IAA, siderophore and solubilization of insoluble phosphate. Further, the plant growth promoting activity of Ps29C and Bm4C on the Indian mustard (Brassica juncea) were assessed with different concentrations of Ni in soil. Inoculation of Ps29C or Bm4C promoted plant growth and protected the plant from Ni toxicity. However, the maximum growth was observed in the plants inoculated with strain Bm4C. Inoculation with Ps29C or Bm4C had little influence on the accumulation of Ni in root and shoot system, but produced a much larger aboveground biomass. The present observations showed that the strains Ps29C and Bm4C protect the plants against the inhibitory effects of nickel, probably due to the production of IAA, siderophore and solubilization of phosphate. The above results provided a new insight into the phytoremediation of Ni contaminated soil.     

Can root-feeders alter the composition of AMF communities? Experimental evidence from the dune grass Ammophila arenaria

Root herbivores and plant mutualists, such as arbuscular mycorrhizal fungi (AMF), have a significant effect on the structure and dynamic of plant communities. Nevertheless, the interactions between the two groups of organisms in natural ecosystems are far from understood. We carried out an inoculation experiment to examine the effect of two root herbivores, Pratylenchus penetrans and P. dunensis (Nematoda), on the composition of the AMF communities associated with two populations of the dune grass Ammophila arenaria. The outcome of the interaction in terms of plant and nematode performance was also analyzed. The total percentage of AMF colonization was not affected by the presence of root-feeders, but they did alter the composition of the AMF communities inside the roots. These changes were dependent on the root-feeder species and the original AMF community: the most severe alterations were observed in the mycorrhizal plants from Wales attacked by P. penetrans. Plant growth was impaired in plants from Wales inoculated with AMF and P. dunensis, which suggests a highly species-specific synergistic interaction with negative consequences for the plant. Root infection by the nematodes was reduced in all mycorrhizal plants when compared to non-mycorrhizal plants. However, a significant reduction of the final number of nematodes was observed only in the mycorrhizal plants from one population.     

Reduced Plasma Membrane H+-ATPase Isoform OsA7 Expression and Proton Pump Activity Decrease Growth Without Affecting Nitrogen Accumulation in Rice

Plasma membrane H⁺-ATPase (PM H⁺-ATPase, EC 3.6.1.3.) is a proton pump that is necessary to promote cell growth and ion fluxes across the plasma membrane. The main goal of this study was to evaluate the role of PM H⁺-ATPase isoform OsA7 expression in rice growth and nitrogen (N) accumulation using three genetically engineered lineages with artificial micro RNA (amiRNA) targeting OsA7 (osa7.1, osa7.2, and osa7.3). PM H⁺-ATPase isoform expression in rice shoots and roots (wild-type) revealed that OsA7 is highly expressed in roots and is the most highly expressed PM H⁺-ATPase isoform. The three osa7 lineages had lower fresh weight, grain yield, height, and 1000-grain weight compared to control IRS plants. The hydroponic experiment comprised three NO₃⁻ levels over 30 days: 0.2 mM NO₃⁻–N, 2.0 mM NO₃⁻–N, and NO₃⁻ starvation for 3 days. The three osa7 lineages had lower PM H⁺-ATPase and V-H⁺-PPase activity as compared to the IRS plants. The root and shoot fresh weights were lower in osa7 lineages. The root/shoot ratio was lower in the osa7 lineages cultivated without nitrogen for 3 days and with 0.2 mM of NO₃⁻–N as compared to IRS, and did not change in plants cultivated with 2.0 mM NO₃⁻–N. The total N concentration did not change in the three osa7 lineages as compared to IRS. Overall, the results indicate that OsA7 is important for rice growth, grain production, and root growth, but does not affect N accumulation, highlighting the importance of other PM H⁺-ATPase isoforms in N uptake.

     

Genetic diversity of <Emphasis Type="Italic">Parides ascanius</Emphasis> (Lepidoptera: Papilionidae: Troidini): implications for the conservation of Brazil’s most iconic endangered invertebrate species

Parides ascanius (Lepidoptera: Papilionidae) is a butterfly endemic to the sand forests (“restingas”) of one of the most populated areas of Brazil (from Rio de Janeiro state to South Espírito Santo state), and was the first invertebrate officially recognized as being threatened in Brazil. Here we present a panel of eight polymorphic microsatellite loci and partial sequences of mitochondrial gene COI aiming to characterize this butterfly’s genetic diversity and understand its distribution among the extant populations. We estimate F_ST metrics, migration rates, cluster assignment, and spatial structure of genetic diversity. F_ST and statistics indicate low genetic structure and no evidence for endogamy, with all populations connected by high migration rates. Seven populations have low permanence rates (68–75 %) with increased migration probabilities for all populations. One population displays higher permanence rate (87.7 %), as the metropolitan matrix isolates it. Spatial analysis shows a global structure around the city of Rio de Janeiro and the Guanabara Bay; assignment analysis recovers six clusters evenly spread among sampled populations. These findings are consistent with a natural scenario of metapopulation dynamics for P. ascanius, with low genetic diversity and no endogamy, but progressively isolated by the metropolitan matrix. Conservation efforts should focus in connecting the isolated population, broaden the searches for new populations, and preserve all extant habitat patches where P. ascanius still occurs.     

Thyroid hormones alter the adenine nucleotide hydrolysis in adult rat blood serum

The effects of ATP, ADP, and adenosine in the processes of platelet aggregation, vasodilatation, and coronary flow have been known for many years. The sequential hydrolysis of ATP to adenosine by soluble nucleotidases constitutes the main system for rapid inactivation of circulating adenine nucleotides. Thyroid disorders affect a number of biological factors including adenosine levels in different fractions. Then, we intend to investigate if the soluble nucleotidases responsible for the ATP, ADP, and AMP hydrolysis are affected by variations in the thyroid hormone levels in blood serum from adult rats. Hyperthyroidism was induced by daily intraperitoneal injections of L-thyroxine (T4) (2.5 and 10.0 μg/100 g body weight, respectively) for 7 or 14 days. Hypothyroidism was induced by thyroidectomy and methimazole (0.05%) added to their drinking water during 7 or 14 days. The treatments efficacy was confirmed by determination of hemodynamic parameters and cardiac hypertrophy evaluation. T4 treatment predominantly inhibited, and hypothyroidism (14 days after thyroidectomy) predominantly increased the ATP, ADP, and AMP hydrolysis in rat blood serum. These results suggest that both excess and deficiency of thyroid hormones can modulate the ATP diphosphohydrolase and 5'-nucleotidase activities in rat blood serum and consequently modulate the effects mediated by these enzymes and their products in vascular system.     

Indigenous and inoculated yeast fermentation of gabiroba (<Emphasis Type="Italic">Campomanesia pubescens</Emphasis>) pulp for fruit wine production

The objectives of this study were to evaluate the potential of gabiroba Campomanesia pubescens (DC) O. Berg in the production of a beverage fermented using selected and wild yeasts from indigenous fermentation, analyze the volatile compounds profile present during the process of fermentation, and evaluate the sensory quality of the final beverage produced. Throughout the process of fermentation, when Saccharomyces cerevisiae UFLA CA 1162 was inoculated, there were stable viable populations around 9 log cells ml⁻¹. During indigenous fermentation, yeast population increased from 3.7 log CFU ml⁻¹ to 8.1 log CFU ml⁻¹ after 14 days. The diversity and dynamics of the yeast population during indigenous fermentation observed by PFGE analysis showed five different karyotyping profiles in the first days of fermentation. After the seventh day, there was a higher frequency of a similar S. cerevisiae profile. The yeast non-Saccharomyces were identified by sequencing of the ITS region as Candida quercitrusa and Issatchenkia terricola. Inoculated fermentations yielded a higher amount of alcohol than indigenous ones, indicating the efficiency of selected strains. There was also a greater concentration of higher alcohols, which are usually responsible for the flavor found in alcoholic beverages. Based on the characteristics of the pulp and acceptance in the sensory analysis, gabiroba fruits showed good potential for use in the production of fermented beverage.