Badijella jalzici - a new genus and species of calanoid copepod (Calanoida, Ridgewayiidae) from an anchialine cave on the Croatian Adriatic coast

A new genus and species of calanoid copepod belonging to the family of Ridgewayiidae is described from an anchialine cave on the small island of Badija, Croatia. In the new species Badijella jalzici, body length varies from 720-870 µm in both sexes. The prosome is 6-segmented, the female urosome is 4-segmented and 5-segmented in the male. The antennules are symmetrical and 26-segmented in the female, and 23-segmented on right side in the male, with two areas of geniculation. The caudal rami are symmetrical and longer than wide. The mouthparts and swimming legs 1-4 are identical in both sexes. The female fifth leg is biramous and symmetrical; the male fifth legs are strongly developed, asymmetrical, biramous on both sides, endopods 2-segmented and exopods 2-segmented and complex in structure.     

Gelatinous invertebrate zooplankton of the South Adriatic: species composition and vertical distribution

The species composition and vertical distribution of gelatinousinvertebrate zooplankton were investigated from April 1993 toJune 1994 in the 0–1000 m water column at a deep-sea stationin the northern part of the South Adriatic Pit. Fifty-sevenspecies were identified: 11 hydromedusae, 13 calycophores, 3ctenophores, 3 heteropods, 10 pteropods, 8 polychaetes and 9chaetognaths. The pteropod Desmopterus papilio and the heteropodProtatlanta mediterranea were recorded for the first time inthe Adriatic Sea. Data from this study differed from those ofprevious investigations in the South Adriatic as regards thenumerically dominant polychaete and pteropod species. All investigatedgroups generally were more abundant in the upper 100 m and decreasedwith depth. Different vertical distributions of life stageswere observed for those species that occupy a wide depth range:Persa incolorata, Solmissus albescens, Limacina inflata, Cymbuliaperoni, Pelagobia longicirrata, Sagitta lyra and Sagitta decipiens.     

Metabolites involved in purine degradation,insulin resistance,and fatty acid oxidation are associated with prediction of Gestational diabetes in plasma

Metabolomics - The precise pharmacological action of inchinkoto (ICKT, Yin-Chen-Hao-Tang in Chinese), a hepatoprotective herbal medicine, on total metabolic pathways has not been well investigated....     

Insulin induces a shift in lipid and primary carbon metabolites in a model of fasting-induced insulin resistance

Introduction

Prolonged fasting in northern elephant seals (NES) is characterized by a reliance on lipid metabolism, conservation of protein, and reduced plasma insulin. During early fasting, glucose infusion previously reduced plasma free fatty acids (FFA); however, during late-fasting, it induced an atypical elevation in FFA despite comparable increases in insulin during both periods suggestive of a dynamic shift in tissue responsiveness to glucose-stimulated insulin secretion.

Objective

To better assess the contribution of insulin to this fasting-associated shift in substrate metabolism.

Methods

We compared the responses of plasma metabolites (amino acids (AA), FFA, endocannabinoids (EC), and primary carbon metabolites (PCM)) to an insulin infusion (65 mU/kg) in early- and late-fasted NES pups (n?=?5/group). Plasma samples were collected prior to infusion (T0) and at 10, 30, 60, and 120 min post-infusion, and underwent untargeted and targeted metabolomics analyses utilizing a variety of GC-MS and LC-MS technologies.

Results

In early fasting, the majority (72%) of metabolite trajectories return to baseline levels within 2 h, but not in late fasting indicative of an increase in tissue sensitivity to insulin. In late-fasting, increases in FFA and ketone pools, coupled with decreases in AA and PCM, indicate a shift toward lipolysis, beta-oxidation, ketone metabolism, and decreased protein catabolism. Conversely, insulin increased PCM AUC in late fasting suggesting that gluconeogenic pathways are activated. Insulin also decreased FFA AUC between early and late fasting suggesting that insulin suppresses triglyceride hydrolysis.

Conclusion

Naturally adapted tolerance to prolonged fasting in these mammals is likely accomplished by suppressing insulin levels and activity, providing novel insight on the evolution of insulin during a condition of temporary, reversible insulin resistance.

     

Some distributional characteristics of small zooplankton at two stations in the Otranto Strait (Eastern Mediterranean)

The qualitative composition, numerical abundance and vertical distribution of protozoan and microcopepod communities were studied in the Otranto Strait at two stations during five cruises from August 1986 to May 1990. The samples were collected with a plankton net of 53-m mesh size equipped with a closing system in six or seven vertical layers. The principal component analysis (PCA) was used to analyse the spatial and temporal variability of small zooplanktonic assemblages. Data are presented for 36 species of radiolarians, 46 tintinnines and for 22 oncaeid copepods. Differences between the eastern shore and the western shore were not significant, according to the PC analysis of the total density values for all assemblages. However, on the basis of the distribution of PC loadings, it was possible to distinguish three vertical layers whose variability contributes in different amounts to the total variability in the small zooplankton community at both stations. The water masses have crucial significance for the spatial and seasonal distribution of all assemblages. Each type of water mass is connected by the presence of characteristic species.     

Glycosylation of Immunoglobulin G: Role of Genetic and Epigenetic Influences

Objective

To determine the extent to which genetic and epigenetic factors contribute to variations in glycosylation of immunoglobulin G (IgG) in humans.

Methods

76  N-glycan traits in circulating IgG were analyzed by UPLC in 220 monozygotic and 310 dizygotic twin pairs from TwinsUK. A classical twin study design was used to derive the additive genetic, common and unique environmental components defining the variance in these traits. Epigenome-wide association analysis was performed using the Illumina 27k chip.

Results

51 of the 76 glycan traits studied have an additive genetic component (heritability, h ²)≥  0.5. In contrast, 12 glycan traits had a low genetic contribution (h²<0.35). We then tested for association between methylation levels and glycan levels (P<2 x10^-6). Among glycan traits with low heritability probe cg08392591 maps to a CpG island 5’ from the ANKRD11 gene, a p53 activator on chromosome 16. Probe cg26991199 maps to the SRSF10 gene involved in regulation of RNA splicing and particularly in regulation of splicing of mRNA precursors upon heat shock. Among those with high heritability we found cg13782134 (mapping to the NRN1L gene) and cg16029957 mapping near the QPCT gene to be array-wide significant. The proportion of array-wide epigenetic associations was significantly larger (P<0.005) among glycans with low heritability (42%) than in those with high heritability (6.2%).

Conclusions

Glycome analyses might provide a useful integration of genetic and non-genetic factors to further our understanding of the role of glycosylation in both normal physiology and disease.     

Comparative Performance of Four Methods for High-throughput Glycosylation Analysis of Immunoglobulin G in Genetic and Epidemiological Research

The biological and clinical relevance of glycosylation is becoming increasingly recognized, leading to a growing interest in large-scale clinical and population-based studies. In the past few years, several methods for high-throughput analysis of glycans have been developed, but thorough validation and standardization of these methods is required before significant resources are invested in large-scale studies. In this study, we compared liquid chromatography, capillary gel electrophoresis, and two MS methods for quantitative profiling of N-glycosylation of IgG in the same data set of 1201 individuals. To evaluate the accuracy of the four methods we then performed analysis of association with genetic polymorphisms and age. Chromatographic methods with either fluorescent or MS-detection yielded slightly stronger associations than MS-only and multiplexed capillary gel electrophoresis, but at the expense of lower levels of throughput. Advantages and disadvantages of each method were identified, which should inform the selection of the most appropriate method in future studies.Glycans are important structural and functional components of the majority of proteins, but because of their structural complexity and the absence of a direct genetic template our current understanding of the role of glycans in biological processes lags significantly behind the knowledge about proteins or DNA (1, 2). However, a recent comprehensive report endorsed by the US National Academies concluded that “glycans are directly involved in the pathophysiology of every major disease and that additional knowledge from glycoscience will be needed to realize the goals of personalized medicine” (3).It is estimated that the glycome (defined as the complete set of all glycans) of a eukaryotic cell is composed of more than a million different glycosylated structures (1), which contain up to 10,000 structural glycan epitopes for interaction with antibodies, lectins, receptors, toxins, microbial adhesins, or enzymes (4). Our recent population-based studies indicated that the composition of the human plasma N-glycome varies significantly between individuals (5, 6). Because glycans have important structural and regulatory functions on numerous glycoproteins (7), the observed variability suggests that differences in glycosylation might contribute to a large part of the human phenotypic variability. Interestingly, when the N-glycome of isolated immunoglobulin G (IgG)¹ was analyzed, it was found to be even more variable than the total plasma N-glycome (8), indicating that the combined analysis of all plasma glycans released from many different glycoproteins blurs signals of protein-specific regulation of glycosylation.A number of studies have investigated the role of glycans in human disease, including autoimmune diseases and cancer (9, 10). However, most human glycan studies have been conducted with very small sample sizes. Given the complex causal pathways involved in pathophysiology of common complex disease, and thus the likely modest effect sizes associated with individual factors, the majority of these studies are very likely to be substantially underpowered. In the case of inflammatory bowel disease, only 20% of reported inflammatory bowel disease glycan associations were replicated in subsequent studies, suggesting that most are false positive findings and that there is publication bias favoring the publication of positive findings (11). This situation is similar to that which occurred in the field of genetic epidemiology in the past when many underpowered candidate gene studies were published and were later found to consist of mainly false positive findings (12, 13). It is essential, therefore, that robust and affordable methods for high-throughput analysis are developed so that adequately powered studies can be conducted and the publication of large numbers of small studies reporting false positive results (which could threaten the credibility of glycoscience) be avoided.Rapid advances of technologies for high-throughput genome analysis in the past decade enabled large-scale genome-wide association studies (GWAS). GWAS has become a reliable tool for identification of associations between genetic polymorphisms and various human diseases and traits (14). Thousands of GWAS have been conducted in recent years, but these have not included the study of glycan traits until recently. The main reason was the absence of reliable tools for high-throughput quantitative analysis of glycans that could match the measurements of genomic, biochemical, and other traits in their cost, precision, and reproducibility. However, several promising high-throughput technologies for analysis of N-glycans were developed (8, 15–20) recently. Successful implementation of high-throughput analytical techniques for glycan analysis resulted in publication of four initial GWAS of the human glycome (21–24).In this study, we compared ultra-performance liquid chromatography with fluorescence detection (UPLC-FLR), multiplex capillary gel electrophoresis with laser induced fluorescence detection (xCGE-LIF), matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF-MS), and liquid chromatography electrospray mass spectrometry (LC-ESI-MS) as tools for mid-to-high-throughput glycomics and glycoproteomics. We have analyzed IgG N-glycans by all four methods in 1201 individuals from European populations. The analysis of associations between glycans and ∼300,000 single-nucleotide genetic polymorphisms was performed and correlation between glycans and age was studied in all four data sets to identify the analytical method that shows the strongest potential to uncover biological mechanisms underlying protein glycosylation.     

Changes in the microzooplankton assemblages in the northern Adriatic Sea during 1989 to 1992

Microzooplankton were sampled at five fixed stations in theopen waters of the northern Adriatic during four cruises in1989, nine in 1990, six in 1991 and 12 in 1992. Changes in thequalitative-quantitative composition, together with the spatial-temporaldistribution of the microzooplankton assemblages in the northernwaters of the open Adriatic, were the result of atypical oceanographicand productivity conditions in the entire region of this sea.Owing to low values of ciliated protozoa, which comprised only26% (1989) and 36% (1991) of the total number of microzooplankton,primary production cannot be controlled through grazing. Thismay possibly explain the occurrence of marine snow. The presenceof the larger mucous aggregates in the later phase causes asignificant decrease in the density of the naupliar copepodpopulation. Therefore, the usual dominance of copepods in summerdoes not occur and their development cycle is displaced to lateautumn. Consequently, only Olihona nana, a species of widerecological tolerance, comprised up to 73% of the total numberof postnaupliar copepods during the presence of mucous aggregatesin 1989. Thus, this small copepod plays an important role inthe processes of remineralization in the northern Adriatic.     

Man and environment around lake Maliq (southern Albania) during the Late Holocene

The archaeological site of Sovjan is located at the edge of lake Maliq. It was occupied from the early Bronze Age to the early Iron Age. Pollen data from a short sequence of peat deposits dated between 4255±50 and 2420±45 uncal B.P. and charcoal, seeds and wood from archaeological deposits have provided new information on human activities in the region. They are discussed in the general frame of agricultural developments in the Balkans. Regional environment (regarding vegetation and hydrology) and climate are also discussed. Received June 15, 2000 / Accepted March 8, 2001     

IgG glycosylation and DNA methylation are interconnected with smoking

Background

Glycosylation is one of the most common post-translation modifications with large influences on protein structure and function. The effector function of immunoglobulin G (IgG) alters between pro- and anti-inflammatory, based on its glycosylation. IgG glycan synthesis is highly complex and dynamic.