Efficient mapping of plant height quantitative trait loci in a sorghum association population with introgressed dwarfing genes

Of the four major dwarfing genes described in sorghum, only Dw3 has been cloned. We used association mapping to characterize the phenotypic effects of the dw3 mutation and to fine map a second, epistatic dwarfing QTL on sorghum chromosome 9 (Sb-HT9.1). Our panel of 378 sorghum inbreds includes 230 sorghum conversion (SC) lines, which are exotic lines that have been introgressed with dwarfing quantitative trait loci (QTL) from a common parent. The causal mutation in dw3 associates with reduced lower internode length and an elongation of the apex, consistent with its role as an auxin efflux carrier. Lines carrying the dw3 mutation display high haplotype homozygosity over several megabases in the Dw3 region, but most markers linked to Dw3 do not associate significantly with plant height due to allele sharing between Dw3 and dw3 individuals. Using markers with a high mutation rate and the dw3 mutation as an interaction term, significant trait associations were detected across a 7-Mb region around Sb-HT9.1, largely due to higher detection power in the SC lines. Conversely, the likely QTL interval for Sb-HT9.1 was reduced to approximately 100 kb, demonstrating that the unique structure of this association panel provides both power and resolution for a genomewide scan.     

Effects of leg flags on nest survival of four species of Arctic‐breeding shorebirds

Marking wild birds is an integral part of many field studies. However, if marks affect the vital rates or behavior of marked individuals, any conclusions reached by a study might be biased relative to the general population. Leg bands have rarely been found to have negative effects on birds and are frequently used to mark individuals. Leg flags, which are larger, heavier, and might produce more drag than bands, are commonly used on shorebirds and can help improve resighting rates. However, no one to date has assessed the possible effects of leg flags on the demographic performance of shorebirds. At seven sites in Arctic Alaska and western Canada, we marked individuals and monitored nest survival of four species of Arctic‐breeding shorebirds, including Semipalmated Sandpipers (Calidris pusilla), Western Sandpipers (C. mauri), Red‐necked Phalaropes (Phalaropus lobatus), and Red Phalaropes (P. fulicarius). We used a daily nest survival model in a Bayesian framework to test for effects of leg flags, relative to birds with only bands, on daily survival rates of 1952 nests. We found no evidence of a difference in nest survival between birds with flags and those with only bands. Our results suggest, therefore, that leg flags have little effect on the nest success of Arctic‐breeding sandpipers and phalaropes. Additional studies are needed, however, to evaluate the possible effects of flags on shorebirds that use other habitats and on survival rates of adults and chicks.     

Genetic variation in TIMP1 but not MMPs predict excess FEV1 decline in two general population-based cohorts

Background

An imbalance in Matrix MetalloProteases (MMPs) and Tissue Inhibitors of MMPs (TIMPs) contributes to Chronic Obstructive Pulmonary Disease (COPD) development. Longitudinal studies investigating Single Nucleotide Polymorphisms (SNPs) in MMPs and TIMPs with respect to COPD development and lung function decline in the general population are lacking.

Methods

We genotyped SNPs in MMP1 (G-1607GG), MMP2 (-1306 C/T), MMP9 (3 tagging SNPs), MMP12 (A-82G and Asn357Ser) and TIMP1 (Phe124Phe and Ile158Ile) in 1390 Caucasians with multiple FEV₁ measurements from a prospective cohort study in the general population. FEV₁ decline was analyzed using linear mixed effect models adjusted for confounders. Analyses of the X-chromosomal TIMP1 gene were stratified according to sex. All significant associations were repeated in an independent general population cohort (n = 1152).

Results

MMP2 -1306 TT genotype carriers had excess FEV₁ decline (-4.0 ml/yr, p = 0.03) compared to wild type carriers. TIMP1 Ile158Ile predicted significant excess FEV₁ decline in both males and females. TIMP1 Phe124Phe predicted significant excess FEV₁ decline in males only, which was replicated (p = 0.10) in the second cohort. The MMP2 and TIMP1 Ile158Ile associations were not replicated. Although power was limited, we did not find associations with COPD development.

Conclusions

We for the first time show that TIMP1 Phe124Phe contributes to excess FEV₁ decline in two independent prospective cohorts, albeit not quite reaching conventional statistical significance in the replication cohort. SNPs in MMPs evidently do not contribute to FEV₁ decline in the general population.     

First Record of the Army Ant Cheliomyrmex morosus in Panama and its High Associate Diversity

The occurrence and distribution of hypogaeic army ants is still poorly known despite their potential importance for tropical soil ecosystems. We present the first record of one of the most cryptic of army ants, Cheliomyrmex morosus , in Panama and list a diverse array of associated arthropods. The late discovery of these ants and high diversity of their associates indicates that much remains to be discovered even in one of the most intensely studied research areas.     

The Vertical Structure and Composition of Homegarden Plants in the Horqin Sandy Land of the Mongols——A case study in the Horqin Juun Garon County of Inner Mongolia

Used the random sampling and recommendation, 30 households of Mongolian in Horqin Juun Garon Country were selected to compare with 10 households of Han nationality which lives in the region of nearby. Forty sampling plots of homegardens were investigated. The results indicates that the perpendicular structure of homegarden plants in Mongolian and Han nationality can be classified to 0-1m, 1-2m, 2-5m, 5-10m, and higher than 10m. The perpendicular structure lower than 5m is predominance in both large and small homegardens. Comparing the cultivation pattern in two nationality, Mongolia still stay in the level of vegetable cultivation which relaled to the daily life, the plants for view and admire are very few at present. But Han nationality have started attaching importance to the view and admire homegarden plants. Besides, this research applied the software MVSP to analyze the type of homegardens and indacates that the homegarden of Mongolian in Horqin Juun Garon Country have four categories, and Han nationality have three categories. The results indicate that there are many differences between Mongolian and Han nationality. This is caused by the differences between the two nationalities in traditional farming culture, animal husbandry culture, the area of homegarden, the history of homegarden, the management of homegarden, and the traditional botanical knowledge on plant species utilization.     

Branched equation modeling of simultaneous accelerometry and heart rate monitoring improves estimate of directly measured physical activity energy expenditure.

The combination of heart rate (HR) monitoring and movement registration may improve measurement precision of physical activity energy expenditure (PAEE). Previous attempts have used either regression methods, which do not take full advantage of synchronized data, or have not used movement data quantitatively. The objective of the study was to assess the precision of branched model estimates of PAEE by utilizing either individual calibration (IC) of HR and accelerometry or corresponding mean group calibration (GC) equations. In 12 men (20.6-25.2 kg/m2), IC and GC equations for physical activity intensity (PAI) were derived during treadmill walking and running for both HR (Polar) and hipacceleration [Computer Science and Applications (CSA)]. HR and CSA were recorded minute by minute during 22 h of whole body calorimetry and converted into PAI in four different weightings (P1-4) of the HR vs. the CSA (1-P1-4) relationships: if CSA > x, we used the P1 weighting if HR > y, otherwise P2. Similarly, if CSA < or = x, we used P3 if HR > z, otherwise P4. PAEE was calculated for a 12.5-h nonsleeping period as the time integral of PAI. A priori, we assumed P1 = 1, P2 = P3 = 0.5, P4 = 0, x = 5 counts/min, y = walking/running transition HR, and z = flex HR. These parameters were also estimated post hoc. Means +/- SD estimation errors of a priori models were -4.4 +/- 29 and 3.5 +/- 20% for IC and GC, respectively. Corresponding post hoc model errors were -1.5 +/- 13 and 0.1 +/- 9.8%, respectively. All branched models had lower errors (P < or = 0.035) than single-measure estimates of CSA (less than or equal to -45%) and HR (> or =39%), as well as their nonbranched combination (> or =25.7%). In conclusion, combining HR and CSA by branched modeling improves estimates of PAEE. IC may be less crucial with this modeling technique.     

Effects of Lecanicillium longisporum infection on the behaviour of the green peach aphid Myzus persicae

The effects of the entomopathogenic fungus Lecanicillium longisporum (Zimmerman) Zare & Gams on three parameters of behaviour (feeding, reproduction and movement) of the green peach aphid Myzus persicae (Homoptera: Aphididae) were investigated in the laboratory. Visual analysis of video tapes established that honeydew excretion events of mycosed aphids gradually declined from 2 d post inoculation and reproduction rate was significantly reduced 2 d prior to death (which occurred on day 6); both parameters were stable in controls over the same period. A detailed comparison was made between mobility of aphids during infection with two isolates of L. longisporum, using image analysis of video recordings. Both isolates caused an increase in activity at the beginning of mycosis (during fungal germination and cuticle invasion) though the intensity and the duration of this behaviour varied with the isolate. The possibility that increased movement in early mycosis helps disseminate disease is discussed in the light of the observation that saprophytic surface growth occurs on living M. persicae as it does in at least some other Lecanicillium spp-insect interactions.     

No apparent negative tagging effects after 13 years at liberty for lemon shark,Negaprion brevirostris implanted with acoustic transmitter

An intact and uncompromised internal acoustic transmitter was non-lethally recovered from a lemon shark Negaprion brevirostris, after 13 years at liberty. The shark, first tagged at an estimated age of 2 years old near South Bimini, Bahamas in 2004, was recaptured in 2017 with a total length of 264 cm. The tagged shark displayed typical growth rate, pregnancy, natal homing and pupping behaviour of other individuals in this population. This observation provides important evidence regarding the effects from long-term retention of implanted acoustic transmitters in a carcharhinid shark.