SPR-MS in functional proteomics

The mapping of protein networks and the establishment of thefunctional relationships between expressed proteins and theireffects on cellular processes represents a great challenge forfunctional or interaction proteomics. The combination of surfaceplasmon resonance (SPR)-based technology with mass spectrometry(MS) has created a unique analytical tool for functional proteomicsinvestigations. Proteins are affinity purified, quantified andcharacterised in terms of their interactions, while the massspectrometer identifies and structurally characterises the biomolecules.Recent developments have led to a closer integration of thesekey technologies, providing a combined approach which enablesidentification of proteins selected on the basis of their functionalbinding criteria. In addition to a historical overview of thisfield, some recent detailed examples of combined SPR-MS approacheswill be reviewed in a number of key application areas, includingligand fishing, peptide sequence and post-translational modificationanalysis by SPR-MS/MS and enzyme inhibitor screening.      

A multi-scale biogeographical analysis of Bambusa arnhemica, a bamboo from monsoonal northern Australia

Aims To identify the edaphic, environmental and historical factors influencing the patchy distribution of the semelparous bamboo Bambusa arnhemica F. Muell. at global, catchment and streambank scales. Location The entire range of B. arnhemica, a highly fire‐prone savanna matrix with generally infertile soils in the north‐west of the Northern Territory of Australia above the 1200 mm mean annual rainfall isohyet. Methods Distribution surveys were conducted by air, boat and on the ground. Plot data were collected throughout the range of the species. Results Bambusa arnhemica occurred predominantly in gallery forests on flood‐prone but nevertheless well‐drained and deep alluvial soils on sloping stream banks. It ranged widely along lentic watercourses from ephemeral headwater streams to the banks of major rivers and levees on the coastal floodplain. The species did not occur in savannas; savannas adjacent to B. arnhemica gallery forests were also flood‐prone and on deep alluvial soils, but were upslope on level ground. Bambusa arnhemica's infrequent non‐riparian occurrences were on a wide variety of substrates but generally on soils of moderate fertility and in coastal and/or rocky areas where at least partial topographic protection from fire is likely. Within and between catchments, the distribution of B. arnhemica was idiosyncratic, occurrence being almost always continuous downstream from highly variable ‘starting’ points to the poorly drained coastal floodplain. Main conclusions At local scales, B. arnhemica appears constrained by poor drainage and high fire‐frequencies. Enhanced soil fertility may increase its capacity to cope with fire. At the catchment and global scales, we propose that the distribution of B. arnhemica is the product of infrequent and as yet incomplete dispersal across and away from watercourses by seed that lacks specialized dispersal mechanisms, combined with passive dispersal along streams. From this we infer that B. arnhemica is neither a very recent, nor very ancient colonist from Asia. Bambusa arnhemica's circumscribed global distribution has no parallel amongst co‐occurring rain forest plants and may be the product of poor dispersal capacity and a substantial rock and floodplain barrier to the east. Limited dispersal capacity may be inextricably linked to local domination of space and the subsequent creation of regeneration space by parental death.     

Champion and Noteworthy Trees

Summary.  The University Botanic Garden, Cambridge boasts one of the finest tree collections in eastern England; an up‐to‐date account of noteworthy and champion trees in the Garden is provided, based in part on previous accounts dating from 1915 and 1984. The history and attributes of some of the finest specimens are given.     

Determinants of intra-annual population dynamics in a tropical soil arthropod

Studies on inter-annual dynamics of populations from temperate regions have shown that density dependence and climate effects are relatively common, albeit weak. Yet, for short-lived organisms, intra-annual variation may be at least as important. Furthermore, tropical species commonly experience temperatures close to their upper thermal limit and thus may be more likely to experience heat stress. Here, we used the soil mite Rostrozetes ovulum to investigate the drivers of intra-annual population dynamics in an Amazonian rain forest. We sampled 3,600 soil cores from 20 transects during 13 months, obtaining 180 mite counts. Next, we built a dynamic N-mixture model accounting for different detection probabilities between soil types. In a Bayesian framework, we used this model to estimate (a) the strength of density dependence and (b) per capita growth rates, which were then tested against environmental variables. We found that the intra-annual population dynamics of R. ovulum were weakly density dependent. Further, per capita growth rates increased with resource supply (litterfall) and decreased with maximum temperature over much of the observed thermal range, although these effects explained relatively little variance. Yet, the seasonal correlation between these factors created a trade-off, so that realized population growth was highest when neither resource supply nor thermal suitability was optimal. Overall, our results suggest that the mechanisms shaping soil animal population dynamics may be surprisingly similar across latitudes. Our model offers a starting point for analyses of soil animal counts when extraction from soil samples is imperfect.     

Reduced Incidence of Cardiac Arrhythmias in Walkers and Runners

Purpose

Walking is purported to reduce the risk of atrial fibrillation by 48%, whereas jogging is purported to increase its risk by 53%, suggesting a strong anti-arrhythmic benefit of walking over running. The purpose of these analyses is to compare incident self-reported physician-diagnosed cardiac arrhythmia to baseline energy expenditure (metabolic equivalent hours per day, METhr/d) from walking, running and other exercise.

Methods

Proportional hazards analysis of 14,734 walkers and 32,073 runners.

Results

There were 1,060 incident cardiac arrhythmias (412 walkers, 648 runners) during 6.2 years of follow-up. The risk for incident cardiac arrhythmias declined 4.4% per baseline METhr/d walked by the walkers, or running in the runners (P = 0.0001). Specifically, the risk declined 14.2% (hazard ratio: 0.858) for 1.8 to 3.6 METhr/d, 26.5% for 3.6 to 5.4 METhr/d, and 31.7% for ≥5.4 METhr/d, relative to <1.8 METhr/d. The risk reduction per METhr/d was significantly greater for walking than running (P<0.01), but only because walkers were at 34% greater risk than runners who fell below contemporary physical activity guideline recommendations; otherwise the walkers and runners had similar risks for cardiac arrhythmias. Cardiac arrhythmias were unrelated to walking and running intensity, and unrelated to marathon participation and performance.

Conclusions

The risk for cardiac arrhythmias was similar in walkers and runners who expended comparable METhr/d during structured exercise. We found no significant risk increase for self-reported cardiac arrhythmias associated with running distance, exercise intensity, or marathon participation. Rhythm abnormalities were based on self-report, precluding definitive categorization of the nature of the rhythm disturbance. However, even if the runners’ arrhythmias include sinus bradycardia due to running itself, there was no increase in arrhythmias with greater running distance.     

A trade-off in stand size effects in the reproductive biology of a declining tropical conifer Callitris intratropica

Because wind pollination is inefficient over longer distances, plants dependent on it may suffer Allee effects (lower individual reproductive fitness with lower density). However, at higher density, individual reproductive fitness may suffer because of intraspecific competition. We investigate density-dependent effects, via stand size, on cone and seed production and seed germinability in a conifer endemic to tropical Australia. Callitris intratropica R.T. Baker & H.G. Smith is an obligate-seeding tree that often occurs in monodominant stands embedded within savannas and on the fringes of monsoon forests. We found that isolated trees (50–300 m from stands) were taller, of broader profile, and produced approximately twice the number of cones (~407 cones per tree) as those in large stands (~173 cones per tree), suggesting that monodominance generates intraspecific competition. The number of seeds per cone (27 seeds) was not related to stand size. However, a contrasting effect in which seed germinability was higher in large stands (~20 vs. <10 % in small stands) was approximately compensatory and consistent with an Allee effect of wind pollination. The net effect of an approximately even trade-off between cone production and seed germinability was that there was neither an Allee or density-dependent effect of stand size on fitness, measured as the number of germinable seeds per tree. Nevertheless, because the likelihood of cross-fertilisation declines with distance, the ability of C. intratropica to persist as very isolated individuals may be limited.