Description of a new Echinorhynchid species (Acanthocephala) from the European eel, Anguilla anguilla, in Germany, with a key species of Acanthocephalus in Europe

Acanthocephalus rhinensis n. sp. is described from the European eel. Anguilla anguilla (Linnaeus, 1758), collected in the Rhine River near the city of Karlsruhe, Germany. It is the sixth species of Acanthocephalus Koelreuther, 1771 described from European fish. Four other species are known from amphibians. The new species is distinguished from the other 5 species infecting fish by having a 1.2-mm-long proboscis armed with 15-21 rows of 13-16 hooks each, lemnisci about as long as receptacle, oblong and slightly pre-equatorial testes, and thin fusiform eggs, measuring 85-95 X 15-18 micro. Testes in the other European species are usually round to ovate, except in Ac. anguillae (Müller, 1780) Lühe, 1911 where they are also elongated but postequatorial. It aslo has an orange-brown belt encircling the anterior end of the trunk. The comparative distribution of Acanthocephalus in Europe and North America, and the validity of 2 presumably questionable species are discussed, Acanthocephalus falcatus (Froelich, 1789) Lühe, 1911 and Ac. Paronai (Cendorelli, 1897) Meyer, 1932. A dichotomus key distinguishing Ac. rhinensis from the other 9 European species is also included. The new species was only found in 3 of 390 eels examined during 11 yr; this may be related to the changing benthos community in the Rhine River.     

An RNA polymerase pause site is associated with the immunoglobulin mus poly(A) site

Immunoglobulin mu alternative RNA processing is regulated during B-cell maturation and requires balanced efficiencies of the competing splice (mum) and cleavage-polyadenylation (mus) reactions. When we deleted sequences 50 to 200 nucleotides beyond the mus poly(A) site, the mus/mum mRNA ratio decreased three- to eightfold in B, plasma, and nonlymphoid cells. The activity could not be localized to a smaller fragment but did function in heterologous contexts. Our data suggest that this region contains an RNA polymerase II pause site that enhances the use of the mus poly(A) site. First, known pause sites replaced the activity of the deleted fragment. Second, the mu fragment, when placed between tandem poly(A) sites, enhanced the use of the upstream poly(A) site. Finally, nuclear run-ons detected an increase in RNA polymerase loading just downstream from the mus poly(A) site, even when the poly(A) site was inactivated. When this mu fragment and another pause site were inserted 1 kb downstream from the mus poly(A) site, they no longer affected the mRNA expression ratio, suggesting that pause sites affect poly(A) site use over a limited distance. Fragments from the immunoglobulin A gene were also found to have RNA polymerase pause site activity.     

Caffeine promotes apoptosis in mitotic spindle checkpoint-arrested cells

The spindle assembly checkpoint arrests cells in mitosis when defects in mitotic spindle assembly or partitioning of the replicated genome are detected. This checkpoint blocks exit from mitosis until the defect is rectified or the cell initiates apoptosis. In this study we have used caffeine to identify components of the mechanism that signals apoptosis in mitotic checkpoint-arrested cells. Addition of caffeine to spindle checkpoint-arrested cells induced >40% apoptosis within 5 h. It also caused proteasome-mediated destruction of cyclin B1, a corresponding reduction in cyclin B1/cdk1 activity, and reduction in MPM-2 reactivity. However, cells retained MAD2 staining at the kinetochores, an indication of continued spindle checkpoint function. Blocking proteasome activity did not block apoptosis, but continued spindle checkpoint function was essential for apoptosis. After systematically eliminating all known targets, we have identified p21-activated kinase PAK1, which has an anti-apoptotic function in spindle checkpoint-arrested cells, as a target for caffeine inhibition. Knockdown of PAK1 also increased apoptosis in spindle checkpoint-arrested cells. This study demonstrates that the spindle checkpoint not only regulates mitotic exit but apoptosis in mitosis through the activity of PAK1.     

An alternative sampling technique for cucumber beetles (Coleoptera: Chrysomelidae) and diurnal beetle activity on muskmelon

Field studies were conducted to investigate the effectiveness of yellow sticky traps as an alternative sampling technique for striped, Acalymma vittatum (F.), and spotted, Diabrotica undecimpunctata howardi Barber, cucumber beetles (Coleoptera: Chrysomelidae) and the diurnal beetle activity on muskmelon, Cucumis melo L., near Vincennes, IN, in 2003 and 2004. The experimental design included six replications of seven 20-m-long rows each of muskmelon with 1.5 m between rows. On each sampling date, two yellow sticky traps were placed randomly between rows in each replication. One sticky trap was placed vertically with the lower edge even with the top of the canopy, whereas the other trap was placed horizontally, even with the top of the canopy. After traps were placed in the field, number of beetles on plants was counted in situ from 0800 to 1600 hours at 2-h intervals the next day. After 48 h in the field, the number of cucumber beetles adhering on traps was counted. Analyses of variance and Tukey's multiple comparison procedure were used to compare the densities of beetles among sampling times, and regression analyses were applied to correlate the numbers of beetles on traps and the numbers of in situ counts. Results show that both species of cucumber beetles were most active from 1200 to 1400 hours, and 20 beetles on the vertically positioned sticky trap were equivalent to one beetle per plant in the field. The application of the sampling technique and scouting time for cucumber beetle management are discussed.     

T cells contain an RNase-insensitive inhibitor of APOBEC3G deaminase activity

The deoxycytidine deaminase APOBEC3G (A3G) is expressed in human T cells and inhibits HIV-1 replication. When transfected into A3G-deficient epithelial cell lines, A3G induces catastrophic hypermutation by deaminating the HIV-1 genome. Interestingly, studies suggest that endogenous A3G in T cells induces less hypermutation than would be expected. However, to date, the specific deaminase activity of endogenous A3G in human CD4+ T cells has not been examined directly. Here, we compared deaminase activity of endogenous and exogenous A3G in various human cell lines using a standard assay and a novel, quantitative, high-throughput assay. Exogenous A3G in epithelial cell lysates displayed deaminase activity only following RNase treatment, as expected given that A3G is known to form an enzymatically inactive RNA-containing complex. Surprisingly, comparable amounts of endogenous A3G from T cell lines or from resting or activated primary CD4+ T cells exhibited minimal deaminase activity, despite RNase treatment. Specific deaminase activity of endogenous A3G in H9, CEM, and other T cell lines was up to 36-fold lower than specific activity of exogenous A3G in epithelial-derived cell lines. Furthermore, RNase-treated T cell lysates conferred a dose-dependent inhibition to epithelial cell lysates expressing enzymatically active A3G. These studies suggest that T cells, unlike epithelial-derived cell lines, express an unidentified RNase-resistant factor that inhibits A3G deaminase activity. This factor could be responsible for reduced levels of hypermutation in T cells, and its identification and blockade could offer a means for increasing antiretroviral intrinsic immunity of T cells.     

mSpecs: a software tool for the administration and editing of mass spectral libraries in the field of metabolomics

Background  

Metabolome analysis with GC/MS has meanwhile been established as one of the "omics" techniques. Compound identification is done by comparison of the MS data with compound libraries. Mass spectral libraries in the field of metabolomics ought to connect the relevant mass traces of the metabolites to other relevant data, e.g. formulas, chemical structures, identification numbers to other databases etc. Since existing solutions are either commercial and therefore only available for certain instruments or not capable of storing such information, there is need to provide a software tool for the management of such data.     

Territorial and mating behavior ofXylocopa fimbriata F. andXylocopa gualanensis Cockerell from Costa Rica

The territorial and mating behavior of two Xylocopaspecies X. fimbriataF. and X. gualanensisCockerell from Costa Rica are described. Male territorial activity was common during February through April in the higher areas of a dry forest savanna. Both species maintained territories at the same location within hollows in the foliage of Ardesia revolutaH.B.K., a small evergreen tree which occurs commonly in the dry forest. Xylocopa fimbriatamaintained territories during early morning hours, whereas the territorial period for X. gualanensisoccurred during late afternoon. Males of both species infrequently marked territories. It is suggested that a secretion released from their mesosomal glands is wiped onto their legs during frequent leg-body and leg rubbing which occurs while males hover. The secretion is occasionally applied to marking points on vegetation by their secretion-contaminated legs. Males repeatedly marked select locations when females were near their territories regardless of whether females were searching nearby branches for nesting sites, gathering provisions, or passing through their areas. Some females oriented to and entered certain male territories. An example of female mate choice in selection of male territories is provided. Females flew into male territories from 2–4 cm down-wind of male scent-marked locations. As females approached these locations, males hovered downwind in close proximity to the females' approach path. As females hovered a few centimeters downwind of the scented focal point, males approached from downwind and mounted. The males behavior and the role of scent-marking in the reproductive behavior of lek polygyny is discussed.     

KID - an algorithm for fast and efficient text mining used to automatically generate a database containing kinetic information of enzymes

Background  

The amount of available biological information is rapidly increasing and the focus of biological research has moved from single components to networks and even larger projects aiming at the analysis, modelling and simulation of biological networks as well as large scale comparison of cellular properties. It is therefore essential that biological knowledge is easily accessible. However, most information is contained in the written literature in an unstructured way, so that methods for the systematic extraction of knowledge directly from the primary literature have to be deployed.     

De novo emergence of insulin-stimulated glucose uptake in human aortic endothelial cells incubated with high glucose

Elevated glucose concentrations have profound effects on cell function. We hypothesized that incubation of human aortic endothelial cells (HAEC) with high glucose increases insulin signaling and develops the appearance of insulin-stimulated glucose uptake by the cells. Compared with 5 mM glucose, incubation of HAEC with 30 mM glucose for up to 48 h increased in a time-dependent manner expression of insulin receptor, insulin receptor substrate (IRS)-1, IRS-2, and GLUT1 proteins. High glucose also increased the specific binding of (125)I-labeled insulin in HAEC accompanied by accelerated production of interleukin (IL)-6 and IL-8. Short-term stimulation by 50 microU/ml insulin did not activate [(14)C]glucose uptake by HAEC incubated in 5 mM glucose. However, an addition of insulin to high glucose-exposed endothelial cells led to a significant increase in [(14)C]glucose uptake in a glucose concentration- and time-dependent fashion, reaching a plateau at 48 h of incubation. Furthermore, incubation of HAEC with 30 mM glucose resulted in a new insulin-stimulated extracellular signal-regulated kinase-1/2 mitogen-activated protein kinase phosphorylation and increased lipid peroxidation and production of reactive oxygen species. These studies show for the first time that high glucose increases expression of insulin receptors and downstream elements of the insulin-signaling pathway and transforms "insulin-resistant" aortic endothelial cells into "insulin-sensitive" tissue regarding glucose uptake.