Evaluating deformation in Spheroolithus dinosaur eggs from Zhejiang,China

Lack of stratigraphic context for dinosaur eggs inhibits understanding of dinosaur reproductive biology and the taphonomic processes of egg preservation. Past taphonomic work suggests two features, compression ridges (sharp edge of broken eggshell around egg circumference) and deformation asymmetry (proportion of crushed to rounded sides of the egg), as geopetal structures. We examined these features across a large sample of Spheroolithus eggs from the Cretaceous of Zhejiang, China, to test their utility. On 103 isolated eggs, we determined asymmetry ratios (crushed side egg height divided by rounded side egg height) and observed an average asymmetry ratio of 0.71. Additional observations of in situ eggs demonstrate the stratigraphic downside as more rounded and less fractured, the stratigraphic upside as flatter with heavier fracturing and compression ridges as parallel to original bedding plane. Burial-caused fractures on the upper side of the egg allowed sediment to partially fill, subsequently supporting the bottom portion. Examining these features within 16 clutches allowed differentiation of biotic versus taphonomically altered arrangements. Three common clutch arrangements include planar (minimal egg overlap), offset (extreme overlap) and agglomerate (randomly arranged, closely packed). Analysis of egg strike and dip across clutches favours planar clutches as the principal configuration for Spheroolithus clutches.     

Proteomic analysis of the cullin 4B interactome using proximity‐dependent biotinylation in living cells

Cullin 4B (CUL4B) mutations have been implicated in mental retardation and dopamine‐related behaviors due to disruptions in their interaction with cullin‐RING E3 ligases (CRLs). Thus, further identification of CUL4B substrates can increase the knowledge of protein homeostasis and illuminate the role of CUL4B in neuropsychiatric disease. However, the transient nature of the coupling between CUL4B and its substrates is difficult to detect in vivo using current approaches, thus hampers efforts to investigate functions of CRLs within unperturbed living systems. In this study, we sought to discover CUL4B interactants with or without dopamine stimulation. BirA (118G) proximity‐dependent biotin labeling combined with LC‐MS was employed to biotinylate and identify transient and weak interactants of CUL4B. After purification with streptavidin beads and identified by LC‐MS, a total of 150 biotinylated proteins were identified at baseline condition, 53 of which are well‐known CUL4B interactants. After dopamine stimulation, 29 proteins disappeared and were replaced by 21 different protein interactants. The altered CUL4B interactants suggest that CUL4B regulates protein turnover and homeostasis in response to dopamine stimulation. Our results demonstrate the potential of this approach to identify novel CUL4B‐related molecules in respond to cellular stimuli, which may be applied to other types of signaling pathways.