Comparative Analysis of a Mitochondrial DNA Control Region Fragment Amplified from Three Adriatic Flatfish Species and Molecular Phylogenesis of Pleuronectiformes

The 5′-end of the mitochondrial control region of three Pleuronectiformes from the Adriatic Sea, Platichthys flesus italicus (Adriatic flounder), Solea vulgaris (common sole), and Solea kleini (Klein's sole), was sequenced and compared with that of six other flatfish species from the families Pleuronectidae and Bothidae. The sequence structures of all flatfishes appear very similar and consist of alternate short segments with low, medium, and high rates of nucleotide substitution. Four conserved 19-bp repeats occur at the beginning of the European and Adriatic flounder sequences. The common occurrence of tandem arrays in fish control regions could be related to a stable secondary structure. Molecular phylogenetic relationships among Pleuronectiformes agree well with previous morphologic data at all taxonomic levels. Molecular analyses could therefore contribute to resolving phylogenetic and taxonomic debates within the Pleuronectiformes. Received December 1, 1997; accepted June 30, 1998.     

Posttranslational modifications of serine protease TMPRSS13 regulate zymogen activation,proteolytic activity,and cell surface localization

TMPRSS13, a member of the type II transmembrane serine protease (TTSP) family, harbors four N-linked glycosylation sites in its extracellular domain. Two of the glycosylated residues are located in the scavenger receptor cysteine-rich (SRCR) protein domain, while the remaining two sites are in the catalytic serine protease (SP) domain. In this study, we examined the role of N-linked glycosylation in the proteolytic activity, autoactivation, and cellular localization of TMPRSS13. Individual and combinatory site-directed mutagenesis of the glycosylated asparagine residues indicated that glycosylation of the SP domain is critical for TMPRSS13 autoactivation and catalytic activity toward one of its protein substrates, the prostasin zymogen. Additionally, SP domain glycosylation-deficient TMPRSS13 displayed impaired trafficking of TMPRSS13 to the cell surface, which correlated with increased retention in the endoplasmic reticulum. Importantly, we showed that N-linked glycosylation was a critical determinant for subsequent phosphorylation of endogenous TMPRSS13. Taken together, we conclude that glycosylation plays an important role in regulating TMPRSS13 activation and activity, phosphorylation, and cell surface localization.     

Environmental impact trade-offs in building envelope retrofit strategies

Purpose

The use of high levels of thermal insulation is a common practice towards reducing the energy consumption of the existing building stock; however, the embodied burdens associated with the additional insulation material are usually not taken into account and questions regarding the risks of over-specifying the insulation levels have been emerging, particularly for mild climate regions. This article addresses the issue presenting an integrated approach that combines life cycle assessment and thermal dynamic simulation to assess alternative retrofit strategies for the roof and exterior walls of two dwellings (from the beginning of the twentieth century), in the historic city center of Coimbra, Portugal. A comprehensive analysis of alternative insulation thicknesses (no insulation, 40, 80, and 120 mm of expanded polystyrene) was made to identify optimal thickness levels minimizing life cycle (LC) environmental impacts for a single-family house and an apartment.

Methods

Embodied and operational impact trade-offs were calculated for six impact categories: climate change, ozone depletion, terrestrial acidification, freshwater eutrophication, marine eutrophication, and non-renewable primary energy. The operational energy was calculated using a dynamic thermal modeling software (EnergyPlus). The functional unit selected for this study was 1 m² of living area over a period of 50 years.

Results and discussion

The single-family house embodied impacts account for 26–57 % of total LC impacts. For insulation thicknesses larger than 80 mm, the embodied impacts are greater than operational impacts. For the apartment, embodied impacts account for 25–49 % of total LC impacts. The environmental benefits of additional insulation are very low (<3 %) for thicknesses of more than 80 mm for both roof and exterior walls. For thicknesses above the tipping point (where total LC impacts are minimized), the marginal impacts of additional insulation are higher than the benefits. The results for the apartment show that optimal insulation thicknesses (LC tipping point) range from 30 to 40 mm for the roof and from 60 to 80 mm for the exterior walls. The LC tipping point for the single-family house is achieved by combining 80–100 mm of roof insulation with 60–80 mm of exterior wall insulation.

Conclusions

Extra insulation levels in temperate climates can lead to higher embodied impacts, without significant reduction in operational impacts, which can result in higher total LC impacts. The results show that a tipping point can be identified, and recommendations are provided for the roof and exterior wall retrofits of buildings from the beginning of the twentieth century.

     

Identification of a sex‐specific molecular marker in Salminus brasiliensis (Characiformes) based on SCAR marker

Salminus brasiliensis, a characin regionally named ‘dourado’ (meaning goldfish), is the biggest characid fish, this species is cited in a list of fishes that are vulnerable. The goal of the present work was to try to identify, through AFLP technique to convert them into single locus markers (SCARs), in order to improve the sex identification in S. brasiliensis. Between possible sex‐specific AFLP markers in this study, one male‐specific were isolated (Les1) and converted into a SCAR marker. Les1 marker was confirmed sex‐specific in all samples tested. A sex‐specific DNA marker applicable to fish would be very useful for elucidating sex determination mechanism in fish.     

Characterisation of yeast microbiota,chemical and sensory properties of organic and biodynamic Sangiovese red wines

Wine quality is closely linked to the fermentation step, which is driven by the microbial ecology of grape and the use of selected microbial strains as well. The microbial species developing during fermentation determines the type and concentration of many substances, which contribute to the sensory properties of wine and its safety. In this view, the present work aims to characterise the yeast microbiota, chemical and sensory properties of Sangiovese red wines obtained from both biodynamic and organic agriculture. The natural yeast populations of grape musts and their evolution during spontaneous were monitored and investigated. In addition, the volatile composition, physico-chemical and safety features (ethyl-carbamate) and sensory properties of wines were evaluated. The results showed that the yeast population was mostly related to the grape management, i.e. organic or biodynamic, while the wine composition was mainly affected by the winemaking process, and then by the grape management.     

Intermediate organelles of the plant secretory pathway: identity and function

The secretory pathway of eukaryotic cells comprises a network of organelles that connects three large membranes, the plasma membrane, the vacuole and the endoplasmic reticulum. The Golgi apparatus and the various post-Golgi organelles that control vacuolar sorting, secretion and endocytosis can be regarded as intermediate organelles of the endocytic and biosynthetic routes. Many processes in the secretory pathway have evolved differently in plants and cannot be studied using yeast or mammalian cells as models. The best characterized organelles are the Golgi apparatus and the prevacuolar compartment, but recent work has shed light on the role of the trans Golgi network, which has to be regarded as a separate organelle in plants. In this study, we wish to highlight recent findings regarding the late secretory pathway and its crosstalk with the early secretory pathway as well as the endocytic route in plants. Recently published findings and suggested models are discussed within the context of known features of the equivalent pathway in other eukaryotes.     

Species‐specific microsatellite loci for the European squid (Loligo vulgaris)

A microsatellite dinucleotide‐enriched library was obtained from the European squid (Loligo vulgaris) and five species‐specific dinucleotide markers were optimized. These markers are highly polymorphic with average expected heterozygosity ranging from 0.706 to 0.927 and allele number ranging from 7 to 17. This set of primers is suitable for population genetic studies.