Resistance Genes and Genetic Elements Associated with Antibiotic Resistance in Clinical and Commensal Isolates of Streptococcus salivarius

The diversity of clinical (n = 92) and oral and digestive commensal (n = 120) isolates of Streptococcus salivarius was analyzed by multilocus sequence typing (MLST). No clustering of clinical or commensal strains can be observed in the phylogenetic tree. Selected strains (92 clinical and 46 commensal strains) were then examined for their susceptibilities to tetracyclines, macrolides, lincosamides, aminoglycosides, and phenicol antibiotics. The presence of resistance genes tet(M), tet(O), erm(A), erm(B), mef(A/E), and catQ and associated genetic elements was investigated by PCR, as was the genetic linkage of resistance genes. High rates of erythromycin and tetracycline resistance were observed among the strains. Clinical strains displayed either the erm(B) (macrolide-lincosamide-streptogramin B [MLS_B] phenotype) or mef(A/E) (M phenotype) resistance determinant, whereas almost all the commensal strains harbored the mef(A/E) resistance gene, carried by a macrolide efflux genetic assembly (MEGA) element. A genetic linkage between a macrolide resistance gene and genes of Tn916 was detected in 23 clinical strains and 5 commensal strains, with a predominance of Tn3872 elements (n = 13), followed by Tn6002 (n = 11) and Tn2009 (n = 4) elements. Four strains harboring a mef(A/E) gene were also resistant to chloramphenicol and carried a catQ gene. Sequencing of the genome of one of these strains revealed that these genes colocalized on an IQ-like element, as already described for other viridans group streptococci. ICESt3-related elements were also detected in half of the isolates. This work highlights the potential role of S. salivarius in the spread of antibiotic resistance genes both in the oral sphere and in the gut.     

Focus on Metabolism: Molecular Genetic Analysis of Glucan Branching Enzymes from Plants and Bacteria in Arabidopsis Reveals Marked Differences in Their Functions and Capacity to Mediate Starch Granule Formation

The major component of starch is the branched glucan amylopectin, the branching pattern of which is one of the key factors determining its ability to form semicrystalline starch granules. Here, we investigated the functions of different branching enzyme (BE) types by expressing proteins from maize (Zea mays BE2a), potato (Solanum tuberosum BE1), and Escherichia coli (glycogen BE [EcGLGB]) in Arabidopsis (Arabidopsis thaliana) mutant plants that are deficient in their endogenous BEs and therefore, cannot make starch. The expression of each of these three BE types restored starch biosynthesis to differing degrees. Full complementation was achieved using the class II BE ZmBE2a, which is most similar to the two endogenous Arabidopsis isoforms. Expression of the class I BE from potato, StBE1, resulted in partial complementation and high amylose starch. Expression of the glycogen BE EcGLGB restored only minimal amounts of starch production, which had unusual chain length distribution, branch point distribution, and granule morphology. Nevertheless, each type of BE together with the starch synthases and debranching enyzmes were able to create crystallization-competent amylopectin polymers. These data add to the knowledge of how the properties of the BE influence the final composition of starch and fine structure of amylopectin.Starch is composed of two glucan polymers: amylopectin and amylose. Amylopectin constitutes around 80% of the mass of most starches and is a large, branched polymer with a tree-like architecture. The positioning and frequency of branch points together with the distribution of chain lengths are thought to be critical factors allowing amylopectin to adopt a semicrystalline state. Within amylopectin molecules, clusters of unbranched chain segments align, and adjacent chains form double helices. These pack into crystalline lamellae that alternate with amorphous regions containing the branch points. Longer chain segments span from one cluster to the next (Zeeman et al., 2010).Amylopectin is synthesized by three enzyme activities. First, starch synthases (SSs) transfer the glucosyl part of ADP-Glc to the nonreducing end of existing glucan chains, forming new α-1,4 glucosidic bonds. Second, branching enzymes (BEs) cleave part of an α-1,4-linked chain and through an inter- or intramolecular transfer reaction, reattach it, creating α-1,6-branch points. This reaction creates additional nonreducing ends on which SSs can act. Third, debranching enzymes (DBEs) hydrolyze some of these branches, tailoring the structure of the polymer to promote its crystallization.Several SS and BE isoforms are involved in starch synthesis in plants. There are five conserved classes of SSs (granule-bound starch synthase [GBSS] and SS1–SS4) and two conserved classes of BEs (classes I and II; also referred to as classes B and A, respectively; Nougué et al., 2014). In addition, plants contain two classes of DBEs: isoamylases (ISAs) and limit dextrinases (LDAs; also called pullulanases). One ISA, a multimeric enzyme composed of either a mixture of ISA1 and ISA2 subunits or just ISA1 subunits, is primarily involved in amylopectin synthesis (James et al., 1995; Mouille et al., 1996; Nakamura et al., 1996; Delatte et al., 2005). The other DBEs (i.e. ISA3 and LDA) are primarily involved in starch degradation (Wattebled et al., 2005; Delatte et al., 2006).Based on the in vitro analysis of purified or recombinant proteins and the phenotypes of mutant plants, the different SS isoforms are proposed to have distinct, albeit overlapping, functions. SS1 is thought to preferentially elongate short chains produced by the branching reactions to between 8 and 12 Glc units (Delvallé et al., 2005; Fujita et al., 2006). SS2 is proposed to elongate such chains farther to about 20 Glc units, optimal for cluster formation (Edwards et al., 1999; Umemoto et al., 2002; Zhang et al., 2008). The precise role of SS3 is less clear, although it has been proposed to generate long, cluster-spanning chains (Fujita et al., 2007). SS4 has a distinct role in initiating and/or coordinating granule formation (Roldán et al., 2007; Crumpton-Taylor et al., 2013).The two different BE classes are also proposed to have distinct functions in amylopectin synthesis. In vitro analyses of maize (Zea mays), rice (Oryza sativa), and potato (Solanum tuberosum) enzymes suggest that the class I enzymes preferentially act on amylose and transfer longer chains, whereas class II enzymes preferentially act on branched substrates, such as amylopectin, and transfer shorter chains (Guan and Preiss, 1993; Rydberg et al., 2001; Nakamura et al., 2010). This knowledge derives largely from experiments where linear or branched substrates were provided to recombinant or purified enzymes and the increased degree of branching was monitored. Similar conclusions were gained by recombinant protein expression in Escherichia coli and yeast (Saccharomyces cerevisiae) strains deficient in their endogenous glycogen BEs (Guan et al., 1995; Seo et al., 2002), where chain elongation by glycogen synthases occurred concurrently with branching.Models have been proposed in which both BE classes help create the final cluster structure of amylopectin: class I BEs initiate branching by transferring long or branched chains, which are subsequently acted on by class II BEs to create more numerous shorter chains. These shorter chains are then elaborated by the SSs to create the clusters (Nakamura et al., 2010). After the branching reactions, a degree of debranching occurs, which is thought to control branch number and positioning and thereby, facilitate amylopectin crystallization (Myers et al., 2000; Zeeman et al., 2010). Several studies have shown that isa1-deficient mutants produce starch with an altered amylopectin, accumulate a related soluble polymer (phytoglycogen), or both (James et al., 1995; Mouille et al., 1996; Nakamura et al., 1996; Delatte et al., 2005).Despite the wide conservation of the two BE classes, major alterations in starch properties are only observed when genes encoding class II enzymes are mutated or repressed. Loss of class I BE activity in maize endosperm, rice endosperm, or potato tuber did not alter starch content and caused only minor differences in amylopectin structure (e.g. the distribution of chain lengths and branch points) and/or starch properties (e.g. gelatinization or digestibility; Safford et al., 1998; Blauth et al., 2002; Satoh et al., 2003; Xia et al., 2011). In contrast, loss of class II BE results in significant changes, such as decreased starch content and a high apparent amylose content. This has been observed in several species, including maize (Stinard et al., 1993), potato (Jobling et al., 1999), pea (Pisum sativum; Bhattacharyya et al., 1990), rice (Mizuno et al., 1993), barley (Hordeum vulgare; Regina et al., 2010), and wheat (Triticum aestivum; Regina et al., 2006). The high apparent amylose content was caused at least in part by the accumulation of less-frequently branched amylopectin that stains with a higher wavelength of maximal absorption (λ_max) than that of the wild type (Boyer et al., 1976). In potato, this phenotype was enhanced by the simultaneous suppression of BE1 (Schwall et al., 2000), a result also shown recently in barley (Carciofi et al., 2012).Arabidopsis (Arabidopsis thaliana) has three genes annotated as BEs, At3g20440 (BE1), At5g03650 (BE2), and At2g36390 (BE3), but it seems that only BE2 and BE3 are active. Both BE2 and BE3 are class II BEs, making Arabidopsis somewhat unusual in not possessing a class I BE. The gene annotated as BE1 encodes a related protein that falls into a separate clade to either class I or II BEs (Dumez et al., 2006; Han et al., 2007; Wang et al., 2010). It was initially suggested that plants with mutations in this gene had a wild-type phenotype (Dumez et al., 2006), but subsequent work indicated that homozygous be1 mutation causes embryo lethality (hence, its alternative name EMBRYO DEFECTIVE2729; Wang et al., 2010). Thus, the function of the protein encoded at At3g20440 is currently unknown but unlikely to be a functional BE.The be2 and be3 single mutants have phenotypes that closely resemble the wild type, indicating that there is a high degree of redundancy between the enzymes. However, be2be3 double mutants lack starch (Dumez et al., 2006). Instead, the plants accumulate large amounts of maltose and other linear malto-oligosaccharides (MOSs). This is presumably because linear chains produced by the SSs are cleaved by starch-degrading enzymes (α- and β-amylases; Dumez et al., 2006). The altered metabolism of these double-mutant plants impedes growth, and they are smaller and paler than the wild type. The precise reason for this is unclear.In addition to mutagenesis, there have been several studies where BEs were overexpressed in transgenic plants. Overexpression of the E. coli glycogen BE (EcGLGB) in potato tubers or rice endosperm resulted in an increased degree of branching of amylopectin (Shewmaker et al., 1994; Kortstee et al., 1996; Kim et al., 2005). Overexpression of endogenous plant BE2 genes has also been performed in both rice and potato, increasing the proportion of shorter amylopectin chains (Tanaka et al., 2004; Brummell et al., 2015), and rice, leading to the accumulation of highly branched, water-soluble polysaccharides (Tanaka et al., 2004). Transgenic expression of genes from different photosynthetic organisms has also shown the degree of functional conservation within the plant BE classes. Sawada et al. (2009) showed that class II BE from Chlorella kessleri could rescue the BE2b-deficient phenotype in rice endosperm.The aim of this work was to investigate the capacity of different types of BEs to mediate starch granule formation by assessing their ability to function in the context of an otherwise intact starch biosynthesis pathway. To do this, we used the Arabidopsis be2be3 double mutants as a line in which to express three types of BEs. We chose BE2a from maize (required for leaf starch synthesis and similar to the endogenous Arabidopsis proteins; Yandeau-Nelson et al., 2011), BE1 from potato (represents the plant class I BEs that Arabidopsis lacks; Safford et al., 1998), and GLGB (the BE from E. coli involved in glycogen biosynthesis). This approach differs from previous investigations, because the activity of each BE type (working in planta with the same set of SSs and DBEs) can be assessed, and the results can be directly compared. In addition, we sought to address whether a glycogen BE was sufficient for starch production—in other words, whether the remaining starch biosynthetic enzymes are capable of generating a crystallization competent polymer, even when partnered with a BE with a different specificity. In previously described transgenic plants expressing E. coli GLGB, the endogenous plant BEs were still present (Shewmaker et al., 1994; Kortstee et al., 1996; Kim et al., 2005).In the transgenic lines generated here, we analyzed glucan synthesis, starch structure, and composition. Our results show that all three BE types can mediate starch granule production but to differing degrees. In each case, the structure of amylopectin and the amylose content depend on the type of BE present, as does starch granule morphology. We discuss the reasons for these differences in relation to previously reported BE properties.     

Delayed administration of pyroglutamate helix B surface peptide (pHBSP), a novel nonerythropoietic analog of erythropoietin, attenuates acute kidney injury

In preclinical studies, erythropoietin (EPO) reduces ischemia-reperfusion-associated tissue injury (for example, stroke, myocardial infarction, acute kidney injury, hemorrhagic shock and liver ischemia). It has been proposed that the erythropoietic effects of EPO are mediated by the classic EPO receptor homodimer, whereas the tissue-protective effects are mediated by a hetero-complex between the EPO receptor monomer and the β-common receptor (termed "tissue-protective receptor"). Here, we investigate the effects of a novel, selective-ligand of the tissue-protective receptor (pyroglutamate helix B surface peptide [pHBSP]) in a rodent model of acute kidney injury/dysfunction. Administration of pHBSP (10 μg/kg intraperitoneally [i.p.] 6 h into reperfusion) or EPO (1,000 IU/kg i.p. 4 h into reperfusion) to rats subjected to 30 min ischemia and 48 h reperfusion resulted in significant attenuation of renal and tubular dysfunction. Both pHBSP and EPO enhanced the phosphorylation of Akt (activation) and glycogen synthase kinase 3β (inhibition) in the rat kidney after ischemia-reperfusion, resulting in prevention of the activation of nuclear factor-κB (reduction in nuclear translocation of p65). Interestingly, the phosphorylation of endothelial nitric oxide synthase was enhanced by EPO and, to a much lesser extent, by pHBSP, suggesting that the signaling pathways activated by EPO and pHBSP may not be identical.     

Heterologous production, assembly, and secretion of a minicellulosome by Clostridium acetobutylicum ATCC 824

The gene man5K encoding the mannanase Man5K from Clostridium cellulolyticum was cloned alone or as an operon with the gene cipC1 encoding a truncated scaffoldin (miniCipC1) of the same origin in the solventogenic Clostridium acetobutylicum. The expression of the heterologous gene(s) was under the control of a weakened thiolase promoter Pthl. The recombinant strains of the solventogenic bacterium were both found to secrete active Man5K in the range of milligrams per liter. In the case of the strain expressing only man5K, a large fraction of the recombinant enzyme was truncated and lost the N-terminal dockerin domain, but it remained active towards galactomannan. When man5K was coexpressed with cipC1 in C. acetobutylicum, the recombinant strain secreted almost exclusively full-length mannanase, which bound to the scaffoldin miniCipC1, thus showing that complexation to the scaffoldin stabilized the enzyme. The secreted heterologous complex was found to be functional: it binds to crystalline cellulose via the carbohydrate binding module of the miniscaffoldin, and the complexed mannanase is active towards galactomannan. Taken together, these data show that C. acetobutylicum is a suitable host for the production, assembly, and secretion of heterologous minicellulosomes.     

Serial magnetic resonance imaging based assessment of the early effects of an ACE inhibitor on postinfarction left ventricular remodeling in rats

In vivo assessment of treatment efficacy on postinfarct left ventricular (LV) remodeling is crucial for experimental studies. We examined the technical feasibility of serial magnetic resonance imaging (MRI) for monitoring early postinfarct remodeling in rats. MRI studies were performed with a 7-Tesla unit, 1, 3, 8, 15, and 30 days after myocardial infarction (MI) or sham operation, to measure LV mass, volume, and the ejection fraction (EF). Three groups of animals were analyzed: sham-operated rats (n = 6), MI rats receiving lisinopril (n = 11), and MI rats receiving placebo (n = 8). LV dilation occurred on day 3 in both MI groups. LV end-systolic and end-diastolic volumes were significantly lower in lisinopril-treated rats than in placebo-treated rats at days 15 and 30. EF was lower in both MI groups than in the sham group at all time points, and did not differ between the MI groups during follow-up. Less LV hypertrophy was observed in rats receiving lisinopril than in rats receiving placebo at days 15 and 30. We found acceptable within- and between-observer agreement and an excellent correlation between MRI and ex vivo LV mass (r = 0.96; p < 0.001). We demonstrated the ability of MRI to detect the early beneficial impact of angiotensin-converting enzyme (ACE) inhibitors on LV remodeling. Accurate and noninvasive, MRI is the tool of choice to document response to treatment targeting postinfarction LV remodeling in rats.     

Field and mesocosm trials on passive sampling for the study of adsorption and desorption behaviour of lipophilic toxins with a focus on OA and DTX1

It has been demonstrated that polymeric resins can be used as receiving phase in passive samplers designed for the detection of lipophilic marine toxins at sea and was referred to as solid phase adsorption toxin tracking (SPATT). The present study describes the uptake and desorption behaviour of the lipophilic marine toxins okadaic acid (OA) and dinophysistoxin-1 (DTX1) from Prorocentrum lima cultures by five styrene—divinylbenzene based polymeric resins Sepabeads^® SP850, Sepabeads^® SP825L, Amberlite^® XAD4, Dowex^® Optipore^® L-493 and Diaion^® HP-20. All resins accumulated OA and DTX1 from the P. lima culture with differences in adsorption rate and equilibrium rate. Following statistical evaluation, HP-20, SP850 and SP825L demonstrated similar adsorption rates. However, possibly due to its larger pore size, the HP-20 did not seem to reach equilibrium within 72 h exposure as opposed to the SP850 and SP825L. This was confirmed when the resins were immersed at sea for 1 week on the West Coast of Ireland. Furthermore, this work also presents a simple and efficient extraction method suitable to SPATT samplers exposed to artificial or natural culture media.     

Capsular glucan and intracellular glycogen of Mycobacterium tuberculosis: biosynthesis and impact on the persistence in mice

Mycobacterium tuberculosis and other pathogenic mycobacterial species produce large amounts of a glycogen-like alpha-glucan that represents the major polysaccharide of their outermost capsular layer. To determine the role of the surface-exposed glucan in the physiology and virulence of these bacteria, orthologues of the glg genes involved in the biosynthesis of glycogen in Escherichia coli were identified in M. tuberculosis H37Rv and inactivated by allelic replacement. Biochemical analyses of the mutants and complemented strains indicated that the synthesis of glucan and glycogen involves the alpha-1,4-glucosyltransferases Rv3032 and GlgA (Rv1212c), the ADP-glucose pyrophosphorylase GlgC (Rv1213) and the branching enzyme GlgB (Rv1326c). Disruption of glgC reduced by half the glucan and glycogen contents of M. tuberculosis, whereas the inactivation of glgA and Rv3032 affected the production of capsular glucan and glycogen, respectively. Attempts to disrupt Rv3032 in the glgA mutant were unsuccessful, suggesting that a functional copy of at least one of the two alpha-1,4-glucosyltransferases is required for growth. Importantly, the glgA mutant was impaired in its ability to persist in mice, suggesting a role for the capsular glucan in the persistence phase of infection. Unexpectedly, GlgB was found to be an essential enzyme.     

Separation and properties of α-mannosidase and mannanase from the basidiomycetePhellinus abietis

Proteins of a crude enzyme preparation obtained from the cultivation medium of the basidiomycetePhellinus abietis were separated by gel filtration and ion-exchange chromatography. The preparation contained a minimum of three enzymes capable of splitting α-d-mannosidic bonds: α-mannosidase, exomannanase, and endomannanase, which were separated. Some properties of the mannanase complex of the crude enzyme preparation, and of a partially purified α-mannosidase were examined. The mannanase complex exhibited two pH optima, its temperature optimum being at 46 °C The pH optimum of purified α-mannosidase was at pH 5.0, the temperature optimum was at 60 °C; the enzyme had a relatively high heat stability. The K_m of α-mannosidase forp-nitrophenyl α-d-mannopyranoside was 1.5 x 10⁻⁵ M. Pure α-mannosidase did not split mannan.     

Role of Oxidative Stress in <Emphasis Type="Italic">C. jejuni</Emphasis> Inactivation During Freeze-Thaw Treatment

Campylobacter jejuni represents one of the leading causes of bacterial enteritis throughout the world. Poultry is an important source of C. jejuni. Despite hygiene measures taken in the production chain, C. jejuni is frequently isolated from poultry meat. C. jejuni is a microaerophilic pathogen, affected by oxidative stress. Freeze-thaw treatment induces cell death by several mechanisms, including oxidative stress. In this article, we investigate the role of oxidative stress in C. jejuni sensitivity during and after a freeze-thaw treatment. This treatment results in dead and sublethally injured cells. The latter population might have an increased sensitivity to oxidative stress. To test this, cells were stored for another 24 h at 4°C under aerobic conditions and compared to cells that were not treated. C. jejuni survival was measured in different media (water, BHI broth, chicken juice, and chicken fillets) to test the environment protective effect. Different strains were tested, including sodB (encoding the superoxide dismutase) and cj1371 (encoding a periplasmic protein) mutants. Cell death was particularly important in water but similar in BHI, chicken juice, and chicken fillets. The sodB mutant was more sensitive to freeze-thaw treatment, suggesting that the killing mechanism involves production of superoxide anions. On the contrary, the cj1371 mutant was more sensitive to storage at 4°C, suggesting that it does not play a role in the detoxification of reactive oxygen species. Storage at 4°C after freeze-thaw treatment increases cell death of oxidative stress-sensitive populations. Sensitization to oxidative stress, freeze-thaw treatment, and further storage at 4°C could be a way to reduce C. jejuni populations on carcasses.