clonality V.0.4: a randomization-based program to test for heterozygosity-genet size relationships in clonal organisms

clonality V.0.4 is a program for testing heterozygosity-genet size relationships in clonal organisms using a randomization procedure. The software has been developed under the Borland Delphi developing environment and a Windows-executable version is freely downloadable from http://gemi.mpl.ird.fr/SiteSGASS/Prugnolle/ClonalityPage.html. The program compares the observed F(IS) of the population with the F(IS) expected if genets (multilocus genotypes present in multiple copies within the population) were chosen randomly from the set of different multilocus genotypes. The randomization procedure is performed with the same number of genets and the same number of repetitions per genet as what is observed in the original data set.     

Impacts of the invasive fungus Austropuccinia psidii (myrtle rust) on three Australian Myrtaceae species of coastal swamp woodland

Exotic fungal pathogens can substantially affect individuals and populations of susceptible native plant species, potentially resulting in changes in community structure and composition. Austropuccinia psidii (myrtle rust) is a pathogenic fungus native to South America that affects species in the plant family Myrtaceae. The pathogen was introduced accidentally to Australia and first detected in NSW in April 2010. Ecological impacts have been poorly studied in the native range of A. psidii and even less in its Australian introduced range. In order to assess the potential impact of A. psidii on coastal swamp woodland, two glasshouse experiments were conducted using three co‐occurring species: Melaleuca quinquenervia, Leptospermum laevigatum and Baeckea linifolia. Plants of each species were grown individually (Experiment 1) and in mixed species assemblages (Experiment 2), with half inoculated with A. psidii and the other half remaining as controls. Infection level was assessed and impact on seedling survival and growth recorded. In both experiments L. laevigatum and M. quinquenervia seedlings were heavily infected and showed high degrees of susceptibility with negative effects on growth (height, biomass and number of leaves). In contrast, no B. linifolia seedling presented visible symptoms of disease, although seedlings showed reduced growth. Melaleuca quinquenervia seedlings had greater infection levels and suffered greater growth reductions than L. laevigatum in both experiments. However, there was no significant difference in the relative abundance of the three species in the mixed‐species experiment. This study provides a better understanding of the potential impacts of A. psidii in this vegetation community and has significant implications for the conservation and management of Australian Myrtaceae‐dominated plant communities generally.     

Detection of Southern tomato virus by molecular hybridisation

Southern tomato virus (STV) is a double‐stranded RNA (dsRNA) virus belonging to the genus Amalgavirus from the family Amalgamaviridae. STV has been detected in tomato plants showing symptoms of stunting, fruit discoloration and size reduction, although its role on symptom development is unclear. Also, little is known about the incidence and epidemiology of this virus and how it spreads in tomato crops. In this work, we developed a molecular hybridisation method by using a digoxigenin‐labelled RNA probe based on the nucleotide sequence of the STV putative coat protein which was tested with different procedures for preparation of plant material. This technique was sensitive enough to detect STV from sap extracts (obtained just by grinding in buffer) from different plant tissues such as leaves, fruits, roots and seeds. This procedure is suitable for field surveys since it allows a cheap and quick processing of a high number of samples. Surveys performed in three important tomato production areas (Peninsular Spain, the Canary Islands and Sicily) showed that STV is widely spread, with incidences ranging from 18% to 74% in different local and commercial tomato varieties.     

Patterns of carbon and nitrogen uptake during blooms of Emiliania huxleyi in two Norwegian fjords

Blooms of the coccolithophorid Emiliania huxleyi were monitoredin two land-locked fjords, Fauskangerpollen and Nordåsvannet(Western Norway), in May 1993. The chemical composition of particulatematter, size-fractionated photosynthesis, calcification, nitrogenuptake rates and the patterns of macromolecular synthesis wereexamined during the peak and decline of E.huxleyi blooms. Thetemporal evolution of the bloom in Fauskangerpollen was definedby a gradual decrease in cell abundance and cell-specific calcificationrates, and by increasing numbers of empty coccospheres and theratio detached coccoliths/living cells. A large proportion ofthe nitrogen required for microplankton growth was suppliedby aminonium and dissolved organic compounds such as urea and,as a consequence, the f-ratios were low (0.2). In general, nitrogenuptake patterns were consistent with ambient concentrationsof nitrogenous species. The photosynthetic carbon metabolismof E.huxleyi dominated phytoplankton assemblages was characterizedby high carbon allocation into lipids and relatively low carbonincorporation into protein as compared with diatom-dominatedassemblages. Consequently, the organic C/nitrogen uptake ratiodetermined stoichiometrically was significantly higher (up to10.8) when coccolithophorids were dominant than in diatom-basedor mixed-phyto-plankton assemblages. These carbon incorporationpatterns were reflected in differences in the chemical compositionof particulate matter.     

Topological studies on rat liver microsomal cholesterol ester hydrolase

Lateral and transversal distribution of cholesterol ester hydrolase activity in rat liver microsomal membranes has been studied. Total cholesterol ester hydrolase activity was found predominantly (75%) in rough microsomes though specific esterase activities were similar in rough and smooth microsomal fractions. The transversal asymmetry of the enzyme was examined using the criteria of protease sensitivity and latency of mannose-6-phosphate phosphatase. Cholesterol ester hydrolase resulted drastically inhibited by proteolysis with trypsin when microsomal integrity had been previously disrupted with sodium deoxycholate or sodium taurocholate. Under these conditions, most lumenal mannose-6-phosphate phosphatase activity was destroyed. However, cholesterol esterase was unaffected by preincubating microsomes with the detergent alone, which led to the complete expression of latent mannose-6-phosphate phosphatase or by preincubating them with trypsin, where less than a 15% of the lumenal mannose-6-phosphate phosphatase was lost. These findings suggest that cholesterol ester hydrolase activity is located on the lumenal surface of the hepatic microsomal vesicles.     

HYDROBIIDAE (GASTROPODA: HYDROBIOIDEA) FROM THE RIBEIRA VALLEY, S.E. BRAZIL, WITH DESCRIPTIONS OF TWO NEW CAVERNICOLOUS SPECIES

Potamolithus karsticus n. sp. and Potamolithus troglo-bius n.sp., two Brazilian aquatic cavesnails (Gastropoda: Hydrobiidae),are described. P. troglobius is blind and depigmented, and isthe first stygobiontic snail to be described from Brazil Additionally, specimens of Potamolithus ribeirensis Pilsbry,1911 were collected near the type locality for comparison withthe new cave species (Received 2 December 1993; accepted 20 June 1994)     

Distribution of myctophid resources in the Indian Ocean

Mesopelagics are one of the largest under-exploited marine resources with wide distribution in the world oceans. Lanternfishes are the key members of mesopelagic communities and the total resource in the world oceans is estimated at 600 million tons. Lanternfishes belong to the family Myctophidae which comprises of about 250 species in 35 genera. Myctophids account for about 75% of total global catch of small mesopelagic fishes. They are known to exhibit diel vertical migration, concentrating during the day time between 400 and 1,000 m, and between 5 and 100 m, during the night. In this paper, an attempt is made to review the existing information on the occurrence and distribution of myctophid resources in the Indian Ocean. 137 myctophid species have been reported from the entire Indian Ocean. Studies in the Arabian Sea have indicated that the area is rich in the midwater fish stocks dominated by myctophids with an estimated potential of 100 million tons.