Turbulence and the microbial food web: effects on bacterial losses to predation and on community structure

Changes in picoplankton population abundance and growth underturbulence have been suggested to be the consequence of turbulenceaffecting larger trophic levels and hence the grazing pressure.We designed a laboratory set-up to assess the effects of turbulenceon plankton assemblages, and tested the degree of food-web complexityneeded to produce cascading effects on picoplankton and theinteractions with nutrient enrichment. Grazing pressure on bacteriawas relaxed under turbulence and we show that one trophic linkis enough to produce effects at the picoplankton level. Nutrientenrichment increased the effect of turbulence as there was morebiomass to act upon. The organisms responsible for driving thegrazing pressure shifts could not be identified since they seemedto change depending on initial conditions and experimental treatment.A trend of increased heterotrophic biomass under turbulencewas found in all cases, which can have important implicationsin community metabolism dynamics.     

BAPJ69-4A: A yeast two-hybrid strain for both positive and negative genetic selection

Genetic selection systems, such as the yeast two-hybrid system, are efficient methods to detect protein-protein and protein-ligand interactions. These systems have been further developed to assess negative interactions, such as inhibition, using the URA3 genetic selection marker. Previously, chemical complementation was used to assess positive selection in Saccharomyces cerevisiae. In this work, a new S. cerevisiae strain, called BAPJ69-4A, containing three selective markers ADE2, HIS3, and URA3 as well as the lacZ gene controlled by Gal4 response elements, was developed and characterized using the retinoid X receptor (RXR) and its ligand 9-cis retinoic acid (9cRA). Further characterization was performed using RXR variants and the synthetic ligand LG335. To assess the functionality of the strain, RXR was compared to the parent strain PJ69-4A in adenine, histidine, and uracil selective media. In positive selection, associating partners that lead to cell growth were observed in all media in the presence of ligand, whereas partners that did not associate due to the absence of ligand displayed no growth. Conversely, in negative selection, partners that did not associate in 5-FOA medium did not display cell death due to the lack of expression of the URA3 gene. The creation of the BAPJ69-4A yeast strain provides a high-throughput selection system, called negative chemical complementation, which can be used for both positive and negative selection, providing a fast, powerful tool for discovering novel ligand receptor pairs for applications in drug discovery and protein engineering.     

Mitosis-dependent protein expression in neuroblastoma cell line N1E-115

Systematic work on differential protein expression in mitosis is limited, and we therefore used neuroblastoma cells (N1E-115) incubated with either colcemid or nocodazole to arrest mitosis. Proteins were identified by MALDI-TOF/TOF and nano-LC-ESI-MS/MS with subsequent quantification of spot volumes with specific software. Immunoblotting was used for verification of selected proteins. Levels of 10 individual proteins were increased and levels of 6 proteins were decreased concordantly by both treatments. These proteins were constituents of heat shock and chaperone, cytoskeleton, proteasomal, heterochromatin, and DNA replication signaling as well as housekeeping and metabolic systems. Identification of mitosis-dependent proteins is of importance for the interpretation of previous work and for designing future experiments.     

Nitric oxide binding to oxygenated hemoglobin under physiological conditions.

We have added nitric oxide (NO) to hemoglobin in 0.1 M and 0.01 M phosphate buffers as well as to whole blood, all as a function of hemoglobin oxygen saturation. We found that in all these conditions, the amount of nitrosyl hemoglobin (HbNO) formed follows a model where the rates of HbNO formation and methemoglobin (metHb) formation (via hemoglobin oxidation) are independent of oxygen saturation. These results contradict those of an earlier report where, at least in 0.01 M phosphate, an elevated amount of HbNO was formed at high oxygen saturations. A radical rethink of the reaction of oxyhemoglobin with NO under physiological conditions was called for based on this previous proposition that the primary product is HbNO rather than metHb and nitrate. Our results indicate that no such radical rethink is called for.     

Effects of acupuncture on radial artery hemodynamics: controlled trials in sensitized and naive subjects

Palpation of the radial pulses is an important technique in traditional Chinese medicine. Two double-blind randomized trials of the effects of real and sham acupuncture on radial artery hemodynamics were conducted in 19 patients regularly exposed to acupuncture (sensitized subjects) and in 8 healthy subjects devoid of previous exposure (naive subjects), respectively. Radial artery diameter and pulse waveform were measured with a high-resolution echotracking system and aplanation tonometry, respectively, before and during a 20-min acupuncture period. In sensitized patients, arterial diameter significantly increased during real acupuncture, compared with the sham group (+7.5 +/- 2.8 vs. -2.9 +/- 2.7%, respectively; P < 0.01). By contrast, in naive subjects, arterial diameter did not change during real or sham acupuncture. In both populations, no significant difference was observed between real and sham acupuncture, concerning the time course of blood pressure, radial artery distensibility, and pressure waveform. Our results demonstrate that real acupuncture is associated with an objective vasodilatation of the radial artery in patients regularly exposed to acupuncture, but not in naive subjects.     

A fuzzy approach for optimal placement of IoT applications in fog-cloud computing

Fog-cloud computing is a promising distributed model for hosting ever-increasing Internet of Things (IoT) applications. IoT applications should meet different characteristics such as deadline, frequency rate, and input file size. Fog nodes are heterogeneous, resource-limited devices and cannot accommodate all the IoT applications. Due to these difficulties, designing an efficient algorithm to deploy a set of IoT applications in a fog-cloud environment is very important. In this paper, a fuzzy approach is developed to classify applications based on their characteristics then an efficient heuristic algorithm is proposed to place applications on the virtualized computing resources. The proposed policy aims to provide a high quality of service for IoT users while the profit of fog service providers is maximized by minimizing resource wastage. Extensive simulation experiments are conducted to evaluate the performance of the proposed policy. Results show that the proposed policy outperforms other approaches by improving the average response time up to 13%, the percentage of deadline satisfied requests up to 12%, and the resource wastage up to 26%.

     

Architectural gear ratio and muscle fiber strain homogeneity in segmented musculature

In the segmented axial musculature of fishes and amphibians, the patterns of muscle fiber shortening depend on both the orientation of muscle fibers relative to the long axis of the body as well as the distance of fibers from the neutral axis of bending (vertebral column). In this study we use the relatively simple architecture of salamander hypaxial muscles to explore the separate and combined effects of these morphological features on muscle fiber strains during swimming. In Siren lacertina the external oblique (EO) muscle has more obliquely oriented muscle fibers and is located further from the neutral axis of bending than the internal oblique (IO) muscle. To examine the effect of muscle fiber angle on strain patterns during swimming, we used sonomicrometry to quantify architectural gear ratio (AGR=longitudinal strain/fiber strain) in these two hypaxial muscles. By comparing the muscle fiber strains and shortening velocities of the EO and IO during swimming, we test whether variation in mediolateral position of the muscle layers is counteracted by their differences in AGR. We find that despite substantial differences in mediolateral position, the EO and IO undergo similar fiber strains and shortening velocities for a given amount of axial bending. Our results show that variation in muscle fiber angle acts to counteract differences in mediolateral position, thereby minimizing variation in muscle fiber strain and shortening velocity during swimming. These results highlight the significance of both muscle architecture and muscle moment arms in determining the fiber strains required for a given movement.     

Smac mimetics as novel promising modulators of apoptosis in the treatment of breast cancer

Breast cancer is the most prevalent cancer in women. Despite improvements in treatment, the rate of breast cancer-related deaths is still high, and this issue needs further, accurate investigations. Although several treatment options are available, none of them are efficient for complete remission, particularly in advanced stages of the disease. It is known that cancerous cells have dysregulated apoptosis-related pathways, by which they can remain alive for a long time, expand freely, and escape from apoptosis-inducing drugs or antitumor immune responses. Therefore, modulation of apoptosis resistance in cancer cells may be an efficient strategy to overcome current problems faced in the development of immunotherapeutic approaches for the treatment of breast cancer. The inhibitors of apoptosis protein (IAPs) are important targets for cancer therapy because it has been shown that these molecules are overexpressed and highly active in various cancer cells and suppress apoptosis process in malignant cells by blockage of caspase proteins. There is evidence of Smac mimetics efficacy as a single agent; however, recent studies have indicated the efficacy of current anticancer immunotherapeutic approaches when combined with Smac mimetics, which are potent inhibitors of IAPs and synthesized mimicking Smac/Diablo molecules. In this review, we are going to discuss the efficacy of treatment of breast cancer by Smac mimetics alone or in combination with other therapeutics.