Retaliation in Response to Castration Promotes a Low Level of Virulence in an Ant–Plant Mutualism

The diversion of a host’s energy by a symbiont for its own benefit is a major source of instability in horizontally-transmitted mutualisms. This instability can be counter-balanced by the host’s retaliation against exploiters. Such responses are crucial to the maintenance of the relationship. We focus on this issue in an obligate ant–plant mutualism in which the ants are known to partially castrate their host plant. We studied plant responses to various levels of castration in terms of (1) global vegetative investment and (2) investment in myrmecophytic traits. Castration led to a higher plant growth rate, signalling a novel case of gigantism induced by parasitic castration. On the other hand, completely castrated plants produced smaller nesting and food resources (i.e. leaf pouches and extra floral nectaries). Since the number of worker larvae is correlated to the volume of the leaf pouches, such a decrease in the investment in myrmecophytic traits demonstrates for the first time the existence of inducible retaliation mechanisms against too virulent castrating ants. Over time, this mechanism promotes an intermediate level of castration and enhances the stability of the mutualistic relationship by providing the ants with more living space while allowing the plant to reproduce.     

Developmentally regulated cleavage of tRNAs in the bacterium Streptomyces coelicolor

The ability to sense and respond to environmental and physiological signals is critical for the survival of the soil-dwelling Gram-positive bacterium Streptomyces coelicolor. Nutrient deprivation triggers the onset of a complex morphological differentiation process that involves the raising of aerial hyphae and formation of spore chains, and coincides with the production of a diverse array of clinically relevant antibiotics and other secondary metabolites. These processes are tightly regulated; however, the genes and signals involved have not been fully elucidated. Here, we report a novel tRNA cleavage event that follows the same temporal regulation as morphological and physiological differentiation, and is growth medium dependent. All tRNAs appear to be susceptible to cleavage; however, there appears to be a bias towards increased cleavage of those tRNAs that specify highly utilized codons. In contrast to what has been observed in eukaryotes, accumulation of tRNA halves in S. coelicolor is not significantly affected by amino acid starvation, and is also not affected by induction of the stringent response or inhibition of ribosome function. Mutants defective in aerial development and antibiotic production exhibit altered tRNA cleavage profiles relative to wild-type strains.     

Parsing recursive sentences with a connectionist model including a neural stack and synaptic gating

It is supposed that humans are genetically predisposed to be able to recognize sequences of context-free grammars with centre-embedded recursion while other primates are restricted to the recognition of finite state grammars with tail-recursion. Our aim was to construct a minimalist neural network that is able to parse artificial sentences of both grammars in an efficient way without using the biologically unrealistic backpropagation algorithm. The core of this network is a neural stack-like memory where the push and pop operations are regulated by synaptic gating on the connections between the layers of the stack. The network correctly categorizes novel sentences of both grammars after training. We suggest that the introduction of the neural stack memory will turn out to be substantial for any biological ‘hierarchical processor’ and the minimalist design of the model suggests a quest for similar, realistic neural architectures.     

Characterization of the ATP-binding domain of the sarco(endo)plasmic reticulum Ca(2+)-ATPase: probing nucleotide binding by multidimensional NMR.

The skeletal muscle sarco(endo)plasmic reticulum Ca(2+)-ATPase (SERCA1a) mediates muscle relaxation by pumping Ca(2+) from the cytosol to the ER/SR lumen. In efforts aimed at understanding the structural basis for the conformational changes accompanying the reaction cycle catalyzed by SERCA1a, we have studied the ATP-binding domain of SERCA1a in both nucleotide-bound and -free forms by NMR. Limited proteolysis analyses guided us to express a 28 kDa stably folded fragment containing the nucleotide-binding domain of SERCA1a spanning residues Thr357-Leu600. ATP binding activity was demonstrated for this fragment by a FITC competition assay. A nearly complete backbone resonance assignment of this 28 kDa ATP-binding fragment, in both the AMP-PNP-bound and -free forms, was obtained by means of heteronuclear multidimensional NMR techniques. NMR titration experiments with AMP-PNP revealed a confined nucleotide-binding site which coincides with a cytoplasmic pocket region identified in the crystal structure of apo-SERCA1a. These results are consistent with previous site-directed mutagenesis studies of SERCA1a.