Biohydrogen production from CO-rich syngas via a locally isolated Rhodopseudomonas palustris PT

Biohydrogen production through water–gas shift (WGS) reaction by a biocatalyst was conducted in batch fermentation. The isolated photosynthetic bacterium Rhodopseudomonas palustris PT was able to utilize carbon monoxide and simultaneously produce hydrogen. Light exposure was provided as an indispensable requirement for the first stage of bacterial growth, but throughout the hydrogen production stage, the energy requirement was met through the WGS reaction. At ambient pressure and temperature, the effect of various sodium acetate concentrations in presence of CO-rich syngas on cell growth, carbon monoxide consumption, and biohydrogen production was also investigated. Maximal efficiency of hydrogen production in response to carbon monoxide consumption was recorded at 86 % and the highest concentration of hydrogen at 33.5 mmol/l was achieved with sodium acetate concentration of 1.5 g/l. The obtained results proved that the local isolate; R. palustris PT, was able to utilize CO-rich syngas and generate biohydrogen via WGS reaction.     

A fluorescent aptasensor for sensitive analysis oxytetracycline based on silver nanoclusters

A fluorescent aptasensor for detection of oxytetracycline (OTC) was presented based on fluorescence quenching of DNA aptamer‐templated silver nanoclusters (AgNCs). The specific DNA scaffolds with two different nucleotides fragments were used: one was enriched with a cytosine sequence fragment (C12) that could produce DNA–AgNCs via a chemical reduction method, and another was the OTC aptamer fragment that could selectively bind to the OTC antibiotic. Thus, the as‐prepared AgNCs could exhibit quenched fluorescence after binding to the target OTC. The fluorescence ratio of the DNA–AgNCs was quenched in a linearly proportional manner to the concentration of the target in the range of 0.5 nM to 100 nM with a detection limit of 0.1 nM. This proposed nanobiosensor was demonstrated to be sensitive, selective, and simple, introducing a viable alternative for rapid determination of toxin OTC in honey and water samples. Copyright © 2016 John Wiley & Sons, Ltd.     

Thermodynamic Parameters and Influence of Kinetic Factors on the Self-Assembly of Acid-Soluble Collagen Nanofibrils

In this study, the acid-soluble collagen (ASC), extracted from the fish scales of the Caspian white fish (Rutilus Firisikutum) was studied. The thermo-gravimetric analysis (TGA) showed the maximum demineralization accomplished after 48 h of EDTA treatment. SDS-PAGE and FT-IR spectroscopy confirmed that extracted ASC was mainly type I collagen. FE-SEM images confirmed the porous and filamentary structure. The denaturation temperature (T_d) of ASC was 19 °C, and the transition heat achieved 9.6 J/g. Collagen self-assembly exhibit important potential because for biomedical applications and green technologies. Various inter- and intra-molecular no-covalent interactions such as hydrogen bonding, hydrophobic, electrostatic and Van der Waals interactions influence the formation of self-assembled collagen. Therefore, critical factors as concentration of ASC, temperature, pH, and ionic strength play crucial role in function integration and structural modulation. The impacts of those external triggers on the kinetic self-assembly of ASC demonstrated a two-phase kinetic process, a sigmoidal plot. ACS showed pronounced self-assembly behavior when temperature and concentration reach above 14 °C and 0.125 mg/ml, higher concentration and/or temperature could stimulate the ASC self-assembly. The optimum pH value for ASC self-assembly was pH = 7. The effect of ionic strength on ASC self-assembly showed the turbidity increases significantly in 131.2 mM salt concentration. The process of self-assembly is mainly driven by thermodynamics. The thermodynamic study of collagen self-assembly illustrated that the activation energy, E_a = 44.3 kJ/mol, the frequency factor, A = 117 × 10⁵ s^?1, the enthalpy transition, ΔH^? = 42.98 kJ/mol, and the entropy transition, ΔS^? = ?0.12 kJ/mol.K, respectively. These findings show that kinetics factors not only influence the self-assembly structure of ASC but also regulate the activation complex structure in the transition state.     

Investigating anticancer properties of the sesquiterpene ferutinin on colon carcinoma cells,in vitro and in vivo

Aims

In this research, ferutinin was evaluated for its possible cytotoxic and apoptotic inducing effects in vitro and in vivo.

Main methods

To determine IC₅₀ values of ferutinin, CT26, HT29 and NIH/3T3 cells were treated with different concentrations of ferutinin. In addition to morphological changes in cells, the DNA damage was studied using DAPI staining, comet assay and PI staining. Ferutinin was also tested for its in vivo activity.

Key findings

Analyses of cell survival by MTT assay showed that the IC₅₀ values of ferutinin on CT26 and HT29 cells were 26 and 29 μg/ml, respectively, while after treating nontumoural mouse cells even with 50 μg/ml ferutinin, 70% of cells was still surviving. The results of DAPI staining and comet assay revealed that ferutinin significantly induced DNA damage in treated cells. Induction of sub-G₁ peak after PI staining was also indicative of apoptotic effects of ferutinin in cancerous cells. In vivo studies showed a significant regression in tumour size in mice treated with ferutinin as compared to control groups. Its antitumour effects were very similar to the cisplatin treated group. Histological studies demonstrated that apoptosis rate in tumour cells was increased in comparison to tumour cells in control mice without ferutinin treatment. Interestingly, haematoxylin and eosin staining showed no damage in the spleen and liver of ferutinin treated mice.

Significance

As ferutinin showed less toxic effects in nontumoural cells, and induced its effects via apoptosis induction, it could be considered as an effective anticancer agent for future preclinical experiments.     

Noninvasive Fetal Sex Determination by Real-Time PCR and TaqMan Probes

Background:Noninvasive fetal sex determination by analyzing Y chromosome-specific sequences is very useful in the management of cases related to sex-linked genetic diseases. The aim of this study was to establish a non-invasive fetal sex determination test using Real-Time PCR and specific probes.Methods:The study was a prospective observational cohort study conducted from August 2018 to September 2019. Venous blood samples were collected from 25 Iranian pregnant women at weeks 7 to 25 of gestation. Cell-free DNA (cfDNA) was isolated from the plasma of samples and fetal sex was determined by SRY gene analysis using the Real-Time PCR technique. In the absence of SRY detection, the presence of fetal DNA was investigated using cfDNA treated with BstUI enzyme and PCR for the epigenetic marker RASSF1A.Results:Of the total samples analyzed, 48% were male and 52% female. The RASSF1A assay performed on SRY negative cases also confirmed the presence of cell-free fetal DNA. Genotype results were in full agreement with neonate gender, and the accuracy of noninvasive fetal sex determination was 100%.Conclusion:Fetal sex determination using the strategy applied in this study is noninvasive and highly accurate and can be exploited in the management of sex-linked genetic diseases.Key Words: Cell-free fetal DNA, Fetal sex determination, Noninvasive prenatal diagnosis, Sex-linked genetic diseases, SRY     

Influence of nitric oxide in protection of tomato seedling against oxidative stress induced by osmotic stress

Osmotic stress associated with drought and salinity is a serious problem that inhibits the growth of plants mainly due to disturbance of the balance between production of ROS and antioxidant defense and causes oxidative stress. In this research, sodium nitroprusside (SNP) was used as NO donor in control and drought-stressed plants, and the role of NO in reduction of oxidative damages were investigated. In this study, we observed that SNP pretreatment prevented drought-induced decrease in RWC and membrane stability index, increase in lipid peroxidation and lipoxygenase activity and increase in hydrogen peroxide content. However, pretreatment of plants with SNP and phenyl 4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide (a NO scavenger) reversed the protective effects of SNP suggesting that protective effect by SNP is attributable to NO release. In addition, the relationship between these defense mechanisms and activity of antioxidant enzymes were checked. Results showed that in drought-stressed plants ascorbate peroxidase (APX), guaiacol peroxidase (GPX) and catalase activities were elevated over the controls, while GR decreased under drought condition. Activity of GPX was inhibited under SNP pretreatment in drought-stressed plants specially, while the activity of APX and GR increased under SNP pretreatment and it seems that under this condition APX had a key role of detoxification of ROS in tomato plants. This result corresponded well with ASA and total acid-soluble thiols content. Therefore, reduction of drought-induced oxidative damages by NO in tomato leaves is most likely mediated through either NO ability to scavenge active oxygen species or stimulation of antioxidant enzyme such as APX.     

Concomitant Up-Regulation of Hsa- Mir-374 and Down-Regulation of Its Targets,GSK-3β and APC,in Tissue Samples of Colorectal Cancer

Background:The WNT-pathway is involved in several cancers, including colorectal cancer (CRC). Many cell signaling components and pathways are controlled by microRNAs. The main purpose of the present study was to investigate the expression of hsa-miR-374, and its two target genes of the Wnt-pathway in CRC clinical samples.Methods:In this study, we predicted the miRNAs targeting key genes of WNT-pathway using bioinformatics algorithms. The expression levels of hsa-miR-374, APC and GSK-3β on 48 pairs of Formalin-Fixed Paraffin-Embedded (FFPE) CRC tumors and marginal-tumors were evaluated using real time-PCR. Additionally, the hsa-miR-374a-5p precursor sequence was amplified by whole-blood DNA as a template. This amplicon was cloned into pEGFP-c1 expression vector and transfected into SW742 cells. Aside from this, MTT assay was performed to evaluate the effect of miR-374 on cell viability. Results:The bioinformatics analysis indicated that hsa-miR-374 binds to the regulatory region the key components of WNT-pathway, including APC and GSK-3β considering the recognition elements and mirSVR scores. Our results revealed significant down-regulation of GSK-3β (0.94 times, p= 0.0098) and APC (0.96 times, p= 0.03) and up-regulation of miR-374 (1.22 times, p= 0.0071) on tumor samples compared with their normal pairs. Meanwhile, the results of the over-expression of miR-374 showed down-regulation of APC and GSK-3β. MTT-assay also indicated that the miR-374 increased cell survival.Conclusion:The results of our study indicated a concomitant change in the expression of miR-374 and its two related target genes, in clinical samples of CRC. Hsa-miR-374 might be as a helpful biomarker or therapeutic target in CRC.Key Words: Colorectal cancer, GSK-3β, miR-374, WNT     

Effects of Chromium and Carnitine Co-supplementation on Body Weight and Metabolic Profiles in Overweight and Obese Women with Polycystic Ovary Syndrome: a Randomized,Double-Blind,Placebo-Controlled Trial

The primary aim of our study was to determine the influence of taking chromium plus carnitine on insulin resistance, with a secondary objective of evaluating the influences on lipid profiles and weight loss in overweight subjects with polycystic ovary syndrome (PCOS). In a 12-week randomized, double-blind, placebo-controlled clinical trial, 54 overweight women were randomly assigned to receive either supplements (200 μg/day chromium picolinate plus 1000 mg/day carnitine) or placebo (27/each group). Chromium and carnitine co-supplementation decreased weight (− 3.6 ± 1.8 vs. − 1.0 ± 0.7 kg, P < 0.001), BMI (− 1.3 ± 0.7 vs. − 0.3 ± 0.3 kg/m², P < 0.001), fasting plasma glucose (FPG) (− 5.1 ± 6.0 vs. − 1.1 ± 4.9 mg/dL, P = 0.01), insulin (− 2.0 ± 1.4 vs. − 0.2 ± 1.2 μIU/mL, P < 0.001), insulin resistance (− 0.5 ± 0.4 vs. − 0.04 ± 0.3, P < 0.001), triglycerides (− 18.0 ± 25.2 vs. + 5.5 ± 14.4 mg/dL, P < 0.001), total (− 17.0 ± 20.3 vs. + 3.6 ± 12.0 mg/dL, P < 0.001), and LDL cholesterol (− 13.3 ± 19.2 vs. + 1.4 ± 13.3 mg/dL, P = 0.002), and elevated insulin sensitivity (+ 0.007 ± 0.005 vs. + 0.002 ± 0.005, P < 0.001). In addition, co-supplementation upregulated peroxisome proliferator-activated receptor gamma (P = 0.02) and low-density lipoprotein receptor expression (P = 0.02). Overall, chromium and carnitine co-supplementation for 12 weeks to overweight women with PCOS had beneficial effects on body weight, glycemic control, lipid profiles except HDL cholesterol levels, and gene expression of PPAR-γ and LDLR. Clinical trial registration number: http://www.irct.ir: IRCT20170513033941N38.

     

Genetically engineered phage harbouring the lethal catabolite gene activator protein gene with an inducer-independent promoter for biocontrol of Escherichia coli

Complications of chemotherapy, such as appearance of multidrug resistance, have persuaded researchers to consider phage therapy as a new method to combat bacterial infections. In vitro experiments were performed to assess the therapeutic value of genetically modified phages for controlling gastrointestinal Escherichia coli O157:H7 cells in Luria–Bertani (LB) media and contaminated cow milk. We constructed a modified nonreplicating M13-derived phage expressing a lethal catabolite gene activator protein (CAP) that is a Glu181Gln mutant of CAP. The modified phagemid was propagated in the lethal CAP-resistant strain XA3DII. Time–kill assay experiments showed a considerable reduction in the number of surviving bacteria in both LB media and contaminated cow milk. Our further study using other test strains demonstrated that the host range of lethal phage is limited to E. coli strains that produce pili. This study provides a possible strategy for the exploitation of genetically engineered nonlytic phages as bactericidal agents by minimizing the risk of release of progeny phages and endotoxins into the environment. The phage was engineered to remain lethal to its bacterial target, but incapable of replicating therein. Furthermore, the addition of an inducer to express the lethal protein is not required.