Biocontrol agents against the leafminer,Liriomyza trifolii in faba bean fields

Effect of entomopathogenic fungi formulations, Beauveria bassiana, Verticillium lecanii, Metarhizium anisopliae and Paecilomyces fumosoroseus, in controlling Liriomyza trifolii (Burg.) (Diptera: Agromyzidae), compared with botanical insecticide, Nimbecidine against L. trifolii was studied. Investigated compounds were applied twice at 15?days interval between sprays. The percentage reduction in larvae population and crop yield was estimated. Results showed that M. anisopliae was the most efficient compound among the other entomopathogenic fungi. Also, there were no significant differences between Nimbecidine and Bio-Magic (M. anisopliae). However, Nimbecidine and Bio-Magic caused 69.9 and 68.9% reduction in live larvae population after two applications. Also, Nimbecidine and Bio-Magic plots achieved 14.7 and 10.0?kg dry weight seeds/100 plants, respectively, compared to 5.7?kg dry weight seeds/100 plants in control plots. Nimbecidine and Bio-Magic were considered promising compounds in controlling L. trifolii and it could be exploitation in the integrated pest management programme of faba bean crop.     

Efficiency of Nimbecidine and certain entomopathogenic fungi formulations against bean aphids,Aphis craccivora in broad bean field

This study investigates the effect of certain entomopathogenic fungi formulations (Beauveria bassiana, Verticillium lecanii, Metarhizium anisopliae and Paecilomyces fumosoroseus) compared with a botanical insecticide, Nimbecidine against Aphis craccivora in broad bean field. Bio-Catch (Verticillium lecanii) was the most effective insecticide to achieve 73.3% reduction followed by Nimbecidine (67.7%), Bio-Magic (61.6%), Priority (50.3%) and the least effective was Bio- Power (Beauveria bassiana) which caused 45.5% reduction in individual aphid populations after two sprayings at 15 days interval between the first and the second sprayings. Bio-Catch and Nimbecidine had promise compounds in controlling Aphis craccivora in faba bean fields.     

Hexagonal-String Phases in Suspension Flow

Abstract

Investigations of the structure of flowing colloidal suspensions have seen structures of predominantly hexagonal strings moving in layered arrangements in the direction of the velocity gradient. A combination of computer simulation trajectories and computer graphics show that the predominant “hexagonal string phase” is the BCC lattice sheared along its (111) slip plane and, moreover, that all the common cubic lattice types contain “hexagonal strings”.     

Insight into TPMT∗23 mutation mis-folding using molecular dynamics simulation and protein structure analysis

Thiopurine S-methyltransferase (TPMT) is an important enzyme that metabolizes thiopurine drugs. This enzyme exhibits a large number of interindividual polymorphism. TPMT^?23 polymorphism has been reported in a few cases in the world in co-dominance with TPMT^?3A. The phenotype has been reported to affect enzyme activity in vivo and in vitro. Its underlying structural basis is not clarified yet. In our study, the wild type (WT) protein structure was analyzed and the amino acids bordering water channels in thiopurine sites were identified. Molecular dynamics of both the WT and TPMT^?23 mutation was carried out. In addition, the effects of this mutation, especially on the thiopurine site which is closed with a pincer like mechanism, were investigated. We focused on explaining how a locally occurred A167G substitution propagated through hydrogen bonds alteration to induce structural modification which affects both thiopurine and S-adenosylmethionine receptors. Finally, a genetic prediction of mutation functional consequences has been conducted confirming altered activity.

An animated Interactive 3D Complement (I3DC) is available in Proteopedia at http://proteopedia.org/w/Journal:JBSD:20     

Translocation and Stability of Replicative DNA Helicases upon Encountering DNA-Protein Cross-links

DNA-protein cross-links (DPCs) are formed when cells are exposed to various DNA-damaging agents. Because DPCs are extremely large, steric hindrance conferred by DPCs is likely to affect many aspects of DNA transactions. In DNA replication, DPCs are first encountered by the replicative helicase that moves at the head of the replisome. However, little is known about how replicative helicases respond to covalently immobilized protein roadblocks. In the present study we elucidated the effect of DPCs on the DNA unwinding reaction of hexameric replicative helicases in vitro using defined DPC substrates. DPCs on the translocating strand but not on the nontranslocating strand impeded the progression of the helicases including the phage T7 gene 4 protein, simian virus 40 large T antigen, Escherichia coli DnaB protein, and human minichromosome maintenance Mcm467 subcomplex. The impediment varied with the size of the cross-linked proteins, with a threshold size for clearance of 5.0–14.1 kDa. These results indicate that the central channel of the dynamically translocating hexameric ring helicases can accommodate only small proteins and that all of the helicases tested use the steric exclusion mechanism to unwind duplex DNA. These results further suggest that DPCs on the translocating and nontranslocating strands constitute helicase and polymerase blocks, respectively. The helicases stalled by DPC had limited stability and dissociated from DNA with a half-life of 15–36 min. The implications of the results are discussed in relation to the distinct stabilities of replisomes that encounter tight but reversible DNA-protein complexes and irreversible DPC roadblocks.     

New bioactive dihydrofuranocoumarins from the roots of the Tunisian Ferula lutea (Poir.) Maire

A phytochemical investigation of the roots of Ferula lutea (Poir.) Maire led to the isolation of new dihydrofuranocoumarins as two inseparable isomers, (?)-5-hydroxyprantschimgin 1 and (?)-5-hydroxydeltoin 2, together with eight known compounds, (?)-prantschimgin 3, (?)-deltoin 4, psoralen 5, xanthotoxin 6, umbelliferone 7, caffeic acid 8, β-sitosterol 9 and stigmasterol 10. Their structures were elucidated on the basis of extensive spectroscopic methods, including 1D and 2D NMR experiments and mass spectroscopy analysis, as well as by comparison with literature data. The anti-acetylcholinesterase and cytotoxic effects of the isolates and antioxidant activities of the mixture (1+2) were also evaluated in this work. Results showed that the mixture (1+2) has the most cytotoxic activity with IC₅₀ values 0.29 ± 0.05 and 1.61 ± 0.57 μM against the cell lines HT-29 and HCT 116, respectively. The greatest acetylcholinesterase inhibitory activity (IC₅₀ = 0.76 ± 0.03) was exhibited by the xanthotoxin 6. In addition, the mixture (1+2) was investigated for its antioxidant activity and showed IC₅₀ values 18.56, 13.06, 7.59, and 4.81 μM towards DPPH free radical scavenging, ABTS radical monocation, singlet oxygen and hydrogen peroxide, respectively.