Pleistocene population expansions of Antarctic seals

We sequenced a portion ( c . 475 bp) of the mitochondrial control region of three species of Antarctic phocid carnivores (Weddell seal, Leptonychotes weddellii , N  = 181; crabeater seal, Lobodon carcinophaga , N  = 143; and Ross seal, Ommatophoca rossii , N  = 41) that live seasonally or permanently in the fast ice and seasonal pack ice of the western Amundsen and Ross seas of western Antarctica. We resolved 251 haplotypes with a haplotype diversity of 0.98 to 0.99. Bayesian estimates of Θ from the program LAMARC ranged from 0.075 for Weddell seals to 0.576 for crabeater seals. We used the values of theta to estimate female effective population sizes ( N_EF ), which were 40 700 to 63 000 for Weddell seals, 44 400 to 97 800 for Ross seals, and 358 500 to 531 900 for crabeater seals. We used mismatch distributions to test for historical population size expansions. Weddell seals and crabeater seals had significant, unimodal mean pairwise difference distributions ( P  = 0.56 and 0.36, respectively), suggesting that their populations expanded suddenly around 731 000 years ago (Weddell seals) and around 1.6 million years ago (crabeater seals). Both of these expansions occurred during times of intensified glaciations and may have been fostered by expanding pack ice habitat.     

Hydrological and biogeochemical controls on the timing and magnitude of nitrous oxide flux across an agricultural landscape

Anticipated increases in precipitation intensity due to climate change may affect hydrological controls on soil N₂O fluxes, resulting in a feedback between climate change and soil greenhouse gas emissions. We evaluated soil hydrologic controls on N₂O emissions during experimental water table fluctuations in large, intact soil columns amended with 100 kg ha^?1 KNO₃‐N. Soil columns were collected from three landscape positions that vary in hydrological and biogeochemical properties (N= 12 columns). We flooded columns from bottom to surface to simulate water table fluctuations that are typical for this site, and expected to increase given future climate change scenarios. After the soil was saturated to the surface, we allowed the columns to drain freely while monitoring volumetric soil water content, matric potential and N₂O emissions over 96 h. Across all landscape positions and replicate soil columns, there was a positive linear relationship between total soil N and the log of cumulative N₂O emissions (r²= 0.47; P= 0.013). Within individual soil columns, N₂O flux was a Gaussian function of water‐filled pore space (WFPS) during drainage (mean r²= 0.90). However, instantaneous maximum N₂O flux rates did not occur at a consistent WFPS, ranging from 63% to 98% WFPS across landscape positions and replicate soil columns. In contrast, instantaneous maximum N₂O flux rates occurred within a narrow range (?1.88 to ?4.48 kPa) of soil matric potential that approximated field capacity. The relatively consistent relationship between maximum N₂O flux rates and matric potential indicates that water filled pore size is an important factor affecting soil N₂O fluxes. These data demonstrate that matric potential is the strongest predictor of the timing of N₂O fluxes across soils that differ in texture, structure and bulk density.     

Odontoglossum ringspot virus host range restriction in Nicotiana sylvestris maps to the replicase gene

The experimental host range of Odontoglossum ringspot virus (ORSV), a member of the tobamoviruses, includes several species of Nicotiana , but not N. sylvestris . However, ORSV was able to replicate in protoplasts from N. sylvestris leaves. By using the green fluorescent protein (GFP) as a marker inserted into ORSV, it was found that a small number of single epidermal cells became infected in mechanically inoculated leaves, but the virus did not move cell to cell. The ORSV movement protein (MP) and coat protein (CP) were examined for their ability to effect movement by substitution into Tobacco mosaic virus (TMV) hybrids. Both proteins and the 3' non-translated region (NTR) of ORSV allowed movement of TMV hybrids in N. sylvestris . These results suggested that the inability of ORSV to move in N. sylvestris was due to the replicase gene or the 5'NTR. One possibility was that the replicase gene could indirectly affect movement by failing to produce subgenomic (sg) RNAs for expression of MP or CP, but this appeared not to be the case as ORSV replicated and produced MP and CP sgRNAs, both of which were translated in N. sylvestris protoplasts. Additionally, genomic RNA was encapsidated into virions in N. sylvestris protoplasts. Because the 5'NTR permitted efficient replication and production of replicase proteins, these findings suggest that the replicase of ORSV is responsible for the defect in cell-to-cell movement of ORSV in N. sylvestris .     

The Biogeochemistry of Submerged Soils. * Kirk, G. 2004. * Chichester, UK: John Wiley & Sons, Ltd. {pound}100 (hardcover). 304 pp.

One can learn a lot about thegeochemistry of submerged soils in this book by Kirk. However,it is not, as the title implies, focused on the biogeochemistryof all submerged soils. In Chapter 1 Kirk gives a very briefoverview     

Leaf Anatomy, Emphasizing Unusual 'Concertina' Mesophyll Cells, of Two East African Legumes (Caesalpinieae, Caesalpinioideae, Leguminosae)

Cordeauxia edulis (Somalia and Ethiopia), andStuhlmannia moavii(Tanzania, Kenya and Madagascar) are evergreen shrubs or smalltrees of dry areas. They have similar leaf anatomy as revealedby resin sectioning and scanning electron microscopy. The cuticleis extremely thick and all vascular bundles lack bundle sheathextensions. The most unusual feature is the mesophyll, threeto seven layers consisting entirely of cylindrical palisadecells with lateral walls capable of changing vertical lengthby folding in a concertina-like manner. The matching outwardfolds of two adjacent cells always remain attached by meansof a row of wall thickenings (‘pegs’). The pegscan elongate, especially so between the widely separated mesophyllcells that occupy the substomatal chamber area. The unattachedflexible inward wall folds enable these ‘concertina’cells to shorten or lengthen vertically without disrupting cellinterconnections in the interior of each relatively long-livedleaf as it periodically loses and gains water. Concertina cellsmay be an anatomical adaptation allowing these leaves to remainevergreen and survive extended periods of drought and yet tostore water quickly when it becomes available. Leguminosae; Caesalpinioideae; Cordeauxia ; Stuhlmannia ; ‘concertina’ mesophyll cells; desert adaptation; hollow glandular trichomes; leaf anatomy; wall thickenings     

WATER EXCHANGE, TEMPERATURE TOLERANCE, OXYGEN CONSUMPTION AND ACTIVITY OF THE NAMIB DESERT SNAIL, TRIGONEPHRUS SP.

Water exchange, temperature tolerance and oxygen consumptionof the snail, Trigonephrus sp., from the southern Namib desertof Namibia were examined and related to activity. At 25°Cand 15% R.H. mean water loss and food and water uptake were5.95 mg. day^–1 and 630 mg.day^–1, respectively. Bodytemperature tracked sand temperature. Snails tolerated sandtemperatures as high as 45°C. Mean ± S.D. oxygenconsumption rates were 32.0 ± 2.94 µlO₂.g totalbody mass^–1.h^–1 at 15°C, when the snails wereactive, and 11.27 µlO₂.g total body mass^–1.h^–1at 25°C, when the snails were inactive. These values are2-6 times lower than those recorded for the similarly sizedmesic snail, Helix aspersa. Activity experiments indicated thatlow ambient temperatures and high humidities were favoured bythe snails. This, together with the burying behaviour of thesesnails during high temperatures, suggests that they limit stressby restricting activity to physiologically-favourable periods,even though more-extreme conditions may be tolerated. (Received 7 June 1990; accepted 20 November 1990)     

A Method for Analysing Plant Architecture as it Relates to Fruit Quality Using Three-dimensional Computer Graphics

A method was developed for the spatial analysis of plant architectureas it relates to the within-plant variation in the physical,chemical, and postharvest characteristics of the fruit Computergraphics were used to reconstruct the architectural frameworkand spatial arrangement of the fruit in the canopy of kiwifruitvines (Actinidia deliciosa) trained on two different supportstructures An infra-red beam theodolite was used to obtain thespatial coordinates of the vines components The data files generatedby the theodolite were in turn used with software specificallywritten for the project (MAPIT—Microcomputer Aided PlantImaging Technology) to provide a 3-dimensional reconstructionof the original vines Each fruit was colour coded so that extremesin their attributes could be easily identified and accuratelylocated in the canopy of the vine Patterns were clearly discerniblefor both the pergola and T-bar trained vines The heavier fruitwere located at the apical ends of the canes, while greatersoluble solids concentrations were associated with the smallerfruit located closer to the cordon These patterns were consistentfor all of the vines examined The use of the theodolite coupledwith the computer graphics described in this paper providesa rapid and objective means of accurately describing plant architecture Computer graphics, plant architecture, spatial analysis, theodolite, three-dimensional analysis, fruit quality, Actinidia deliciosa, kiwifruit