Phylogenetic analysis of the tenascin gene family: evidence of origin early in the chordate lineage

Background  

Tenascins are a family of glycoproteins found primarily in the extracellular matrix of embryos where they help to regulate cell proliferation, adhesion and migration. In order to learn more about their origins and relationships to each other, as well as to clarify the nomenclature used to describe them, the tenascin genes of the urochordate Ciona intestinalis, the pufferfish Tetraodon nigroviridis and Takifugu rubripes and the frog Xenopus tropicalis were identified and their gene organization and predicted protein products compared with the previously characterized tenascins of amniotes.     

A novel surface protein of Trichomonas vaginalis is regulated independently by low iron and contact with vaginal epithelial cells

Background  

Trichomonosis caused by Trichomonas vaginalis is the number one, non-viral sexually transmitted disease (STD) that affects more than 250 million people worldwide. Immunoglobulin A (IgA) has been implicated in resistance to mucosal infections by pathogens. No reports are available of IgA-reactive proteins and the role, if any, of this class of antibody in the control of this STD. The availability of an IgA monoclonal antibody (mAb) immunoreactive to trichomonads by whole cell (WC)-ELISA prompted us to characterize the IgA-reactive protein of T. vaginalis.     

Personality and body condition have additive effects on motivation to feed in Zebra Finches Taeniopygia guttata

Several hypotheses have been proposed to account for the adaptive evolution of personality, defined as inter‐individual differences in behaviour that are consistent over time and across situations. For instance, the ‘pace‐of‐life syndrome’ hypothesis suggests that personality evolved as a behavioural correlate of life‐history trajectories that vary within populations. Thus, proactivity, corresponding to higher exploratory tendencies or higher boldness levels, has been linked to higher productivity or mortality rates. However, the extent to which proactivity is associated with a higher motivation to forage remains poorly understood. Moreover, although personality and its effects on foraging behaviour are usually considered to be independent of any motivational or nutritional state, few studies so far have challenged this. Here we show that personality traits, both individually or combined using a principal component analysis, and body condition have additive effects on latency to feed following food deprivation in the Zebra Finch Taeniopygia guttata, with personality accounting for 41% and body condition for about 20% of the total variation in latency to feed. In accordance with the pace‐of‐life syndrome hypothesis, latency to feed was negatively related to the degree of proactivity and positively related to body condition. Thus, proactive individuals and individuals in poorer condition were quicker to start feeding after a period of food deprivation. The absence of a significant interaction between personality and body condition further suggests that the effect of personality was independent of body condition. We discuss the relevance of our results in relation to the different factors influencing foraging in birds. Moreover, we place our results within a life‐history framework by emphasizing the correlated evolution of life‐history traits and personality.     

Land snail diversity in the monsoon tropics of Northern Australia: revision of the genus Exiligada Iredale, 1939 (Mollusca: Pulmonata: Camaenidae), with description of 13 new species

Vast parts of the monsoon tropics of Australia feature semi‐arid habitats, which are generally thought to harbour a depauperate land snail fauna as compared to the mesic continental fringes, in particular the Australian wet tropics. However, our knowledge of land snails inhabiting these often remote environments is still very patchy. In order to improve the understanding of land snail diversity in the monsoon tropics, we revised the camaenid land snail genus Exiligada based on comprehensive collections, undertaken by use of helicopters on remote limestone outcrops in the Northern Territory and in Western Australia. Based on comparative analyses of shell and genital morphology and patterns of molecular differentiation, we recognize 15 species within Exiligada, 13 of which are newly described. In addition, we suggest a revised delimitation of the type species Exiligada negriensis, as compared to the latest available revision, by removing Exiligada qualis from its synonymy and recognizing it as a distinct species. A key for species identification is also provided. Molecular phylogenetic analyses strongly supported the monophyly of Exiligada with respect to other confamilial genera known to occur in the same geographical region. Most Exiligada species are narrowly endemic to restricted limestone outcrops that cover areas with a diameter of about 20 to 150 km. Within the distributional range of Exiligada, the ranges of up to seven species overlap but we never found more than three species to occur in sympatry at a given sampling site. We propose that species originated by allopatric differentiation, followed by secondary range expansion, leading to sympatric distributions. Our study confirms that less complex rock habitats in more xeric environments support no more than three sympatric species, this being likely to be a result of ecological exclusion. © 2012 The Linnean Society of London, Zoological Journal of the Linnean Society, 2012, 166 , 689–722.     

Comparison of Methods for Estimating Bird Abundance and Trends From Historical Count Data

Abstract: The use of bird counts as indices has come under increasing scrutiny because assumptions concerning detection probabilities may not be met, but there also seems to be some resistance to use of model-based approaches to estimating abundance. We used data from the United States Forest Service, Southern Region bird monitoring program to compare several common approaches for estimating annual abundance or indices and population trends from point-count data. We compared indices of abundance estimated as annual means of counts and from a mixed-Poisson model to abundance estimates from a count-removal model with 3 time intervals and a distance model with 3 distance bands. We compared trend estimates calculated from an autoregressive, exponential model fit to annual abundance estimates from the above methods and also by estimating trend directly by treating year as a continuous covariate in the mixed-Poisson model. We produced estimates for 6 forest songbirds based on an average of 621 and 459 points in 2 physiographic areas from 1997 to 2004. There was strong evidence that detection probabilities varied among species and years. Nevertheless, there was good overall agreement across trend estimates from the 5 methods for 9 of 12 comparisons. In 3 of 12 comparisons, however, patterns in detection probabilities potentially confounded interpretation of uncorrected counts. Estimates of detection probabilities differed greatly between removal and distance models, likely because the methods estimated different components of detection probability and the data collection was not optimally designed for either method. Given that detection probabilities often vary among species, years, and observers investigators should address detection probability in their surveys, whether it be by estimation of probability of detection and abundance, estimation of effects of key covariates when modeling count as an index of abundance, or through design-based methods to standardize these effects.     

Diurnal Habitat Use by Lower Keys Marsh Rabbits

Abstract: We used radiotelemetry to locate daytime forms of endangered Lower Keys marsh rabbits (LKMRs; Sylvilagus palustris hefneri) throughout their range so we could determine habitat characteristics of diurnal cover. We typically found forms (n = 1,298) of 36 rabbits in brackish wetlands in patches of saltmarsh or buttonwoods. In freshwater wetlands, forms (n = 54) were located most often in patches of freshwater hardwoods embedded in or adjacent to freshwater marshes. Forms (n = 942) in brackish wetlands were characterized by thick groundcover (>75%), whereas those (n = 42) in freshwater wetlands had both thick groundcover and canopy vegetation. The mean minimum convex polygon around forms of 15 rabbits was 1.4 ha (SD = 1.7), with smaller ranges characterized by thick bunchgrasses or clump-forming sedges. To increase the amount of annual space usable by LKMRs, managers should provide more saltmarsh habitat interspersed with buttonwoods and enhance ground cover in existing habitat.     

SLUG DAMAGE AND NUMBER OF SLUGS (GASTROPODA: PULMONATA) IN WINTER WHEAT IN FIELDS WITH SOWN WILDFLOWER STRIPS

Previous observations have shown that slugs found favourableconditions for reproduction in wildflower strips and that theycaused high damage to oilseed rape adjacent to the strips. Inthe current study slug numbers and damage were estimated inwildflower strips and at different distances from the stripsinto winter wheat crops, from 1994 to 1996. Slug damage wasestimated using an index of defoliation and slug numbers andactivity were measured using wheat bran traps. Investigationsbegan when winter wheat seedlings emerged and lasted for fiveweeks. Slug damage was never severe in any of the fields studied.In most fields, slug damage was higher close to the wildflowerstrips than at greater distances from the strips. The decliningslug damage with increasing distances from the wildflowers stripswas related to the distribution pattern of juvenile Arion lusitanicus,suggesting that this species was responsible for the higherdamage near the strips. Other slug species (Deroceras reticulatum,Arion fasciatus, Deroceras laeve) were more or less evenly distributedover the field or were almost entirely confined to the wildflowerstrips. Results showed that winter wheat was not at risk fromslug feeding in spite of the establishment of wildflower stripsand that therefore the application of molluscicide along thestrips is unnecessary. (Received 23 June 1997; accepted 17 October 1997)