Phylogeography of two cryptic species of African desert jerboas (Dipodidae: Jaculus)

The lesser Egyptian jerboa Jaculus jaculus is a desert dwelling rodent that inhabits a broad Arabian–Saharan arid zone. Recently, two distant sympatric lineages were described in North‐West Africa, based on morphometric and molecular data, which may correspond to two cryptic species. In the current study, phylogenetic relationships and phylogeographical structure among those lineages and geographical populations from North Africa and the Middle East were investigated. The phylogeographical patterns and genetic diversity of the cytochrome b gene (1110 bp) were addressed on 111 jerboas from 41 localities. We found that the variation in Africa is partitioned into two divergent mitochondrial clades (10.5% divergence relating to 1.65–4.92 Mya) that corresponds to the two cryptic species: J. jaculus and J. deserti. Diversifications within those cryptic species/clades were dated to 0.23–1.13 Mya, suggesting that the Middle Pleistocene climatic change and its environmental consequences affected the evolutionary history of African jerboas. The third distant clade detected, found in the Middle East region, most likely represents a distinct evolutionary unit, independent of the two African lineages. © 2012 The Linnean Society of London, Biological Journal of the Linnean Society, 2012, ??, ??–??.     

Xeml Lab: a tool that supports the design of experiments at a graphical interface and generates computer-readable metadata files, which capture information about genotypes, growth conditions, environmental perturbations and sampling strategy

Data mining depends on the ability to access machine-readable metadata that describe genotypes, environmental conditions, and sampling times and strategy. This article presents Xeml Lab. The Xeml Interactive Designer provides an interactive graphical interface at which complex experiments can be designed, and concomitantly generates machine-readable metadata files. It uses a new eXtensible Mark-up Language (XML)-derived dialect termed XEML. Xeml Lab includes a new ontology for environmental conditions, called Xeml Environment Ontology. However, to provide versatility, it is designed to be generic and also accepts other commonly used ontology formats, including OBO and OWL. A review summarizing important environmental conditions that need to be controlled, monitored and captured as metadata is posted in a Wiki ( http://www.codeplex.com/XeO ) to promote community discussion. The usefulness of Xeml Lab is illustrated by two meta-analyses of a large set of experiments that were performed with Arabidopsis thaliana during 5 years. The first reveals sources of noise that affect measurements of metabolite levels and enzyme activities. The second shows that Arabidopsis maintains remarkably stable levels of sugars and amino acids across a wide range of photoperiod treatments, and that adjustment of starch turnover and the leaf protein content contribute to this metabolic homeostasis.     

There is No Somatic Meiosis in Embryogenic Leaves of Cichorium

Several papers dealing with carrot cell cultures describe meiosis-likedivisions and haploid cells prior to somatic embryogenesis.We have studied the first division in embryogenic mesophyllcells of a diploidCichorium intybus L. and of a tetraploid hybridC.intybus L.xC. endivia L. which undergo direct somatic embryogenesisfrom single cells when leaf fragments are placed in a liquidagitated inductive medium (modified MS with 1x10^-7M NAA and2.5x10^-6M 2-iP), in darkness, at 35°C. MicrosporogenesisinC. intybus provided aspects of meiosis for comparison. Inleaves incubated in inductive conditions, DAPI staining of nucleishowed normal mitosis on days 3–6; about 0.6% cells inprophase had undergone spontaneous endoreduplication leadingto a tetraploid somatic embryo. Immunocytochemistry of tubulinrevealed the constant presence of a preprophase band, as ina normal mitosis. The first pluricellular somatic embryos becamevisible on day 5 of culture. Flow cytometric determination ofnuclear DNA on days 4, 5 and 6 did not show any peak correspondingto the 1C DNA level for the diploid plant or to the 2C DNA levelfor the tetraploid. Instead there was a weak but constant peakat the 4C and 8C levels. We conclude that inCichorium leaves,the first division of somatic embryogenesis is a normal mitosis,with a small shift to endoreduplication. In our opinion, somaticmeiosis is not a prerequisite during direct somatic embryogenesis. Cichorium ; chicory; somatic embryogenesis; cell division; flow cytometry; tubulin     

Sexual and Asexual Development of Cryptosporidium parvum in Five Oocyst– or Sporozoite-Infected Human Enterocytic Cell Lines

ABSTRACT. The human enterocytic cell lines Caco-2, HT29, HCT8 and the Caco-2 clones TC7 and PF11 were studied for their ability to support Cryptosporidium parvum development. Following the addition in cultures of either oocysts or excysted sporozoites, immunofluorescent and transmission electron microscopy revealed the presence of all stages of the parasite life cycle by both procedures, and no difference in the ration of infected cells was found among cell lines. More oocysts were seen in cell monolayers infected with oocysts than with sporozoites (p < 0.0001). The number of meronts observed was the same after either oocysts or sporozoites inoculation. Data suggest that the two methods yield a same cell infection rate.     

Impact of simulated drought on ecosystem biomass production: an experimental test in stream mesocosms

Climate models predict widespread shifts in precipitation patterns and increases in the frequency of extreme events such as droughts, but consequences for key processes in affected ecosystems remains poorly understood. A 2‐year manipulative experiment used a series of stream mesocosms to test the effect of recurrent drought disturbance on the composition and secondary production of macroinvertebrate consumer assemblages and functional groups. On average, secondary production in drought‐disturbed communities (mean 4.5 g m^?2 yr^?1) was less than half of that that in controls (mean 10.4 g m^?2 yr^?1). The effects of the drought differed among functional feeding groups, with substantial declines for detritivore shredders (by 69%) and engulfing predators (by 94%). Contrasting responses were evident among taxa within most functional feeding groups, ranging from extirpation to irruptions in the case of several small midge larvae, but production of most species was suppressed. Taxon‐specific responses were related to body mass and voltinism. The ratio of production to biomass (community P/B) increased under drought, reflecting a shift in production from large long‐lived taxa to smaller taxa with faster life cycles. This research provides some of the first experimental evidence of the profound effects that droughts can have on both the structure and functioning of aquatic ecosystems.     

Dissolved carbon leaching from soil is a crucial component of the net ecosystem carbon balance

Estimates of carbon leaching losses from different land use systems are few and their contribution to the net ecosystem carbon balance is uncertain. We investigated leaching of dissolved organic carbon (DOC), dissolved inorganic carbon (DIC), and dissolved methane (CH₄), at forests, grasslands, and croplands across Europe. Biogenic contributions to DIC were estimated by means of its δ¹³C signature. Leaching of biogenic DIC was 8.3±4.9 g m^?2 yr^?1 for forests, 24.1±7.2 g m^?2 yr^?1 for grasslands, and 14.6±4.8 g m^?2 yr^?1 for croplands. DOC leaching equalled 3.5±1.3 g m^?2 yr^?1 for forests, 5.3±2.0 g m^?2 yr^?1 for grasslands, and 4.1±1.3 g m^?2 yr^?1 for croplands. The average flux of total biogenic carbon across land use systems was 19.4±4.0 g C m^?2 yr^?1. Production of DOC in topsoils was positively related to their C/N ratio and DOC retention in subsoils was inversely related to the ratio of organic carbon to iron plus aluminium (hydr)oxides. Partial pressures of CO₂ in soil air and soil pH determined DIC concentrations and fluxes, but soil solutions were often supersaturated with DIC relative to soil air CO₂. Leaching losses of biogenic carbon (DOC plus biogenic DIC) from grasslands equalled 5–98% (median: 22%) of net ecosystem exchange (NEE) plus carbon inputs with fertilization minus carbon removal with harvest. Carbon leaching increased the net losses from cropland soils by 24–105% (median: 25%). For the majority of forest sites, leaching hardly affected actual net ecosystem carbon balances because of the small solubility of CO₂ in acidic forest soil solutions and large NEE. Leaching of CH₄ proved to be insignificant compared with other fluxes of carbon. Overall, our results show that leaching losses are particularly important for the carbon balance of agricultural systems.     

The first record of gynodioecy in a species of Gnidia (Thymelaeaceae) from South Africa

Sexual polymorphism was studied in the shrub Gnidia wikstroemiana (Thunb.) Meisn. from the semiarid Nama Karoo Biome, South Africa. The populations comprised plants bearing either female flowers, or hermaphrodite flowers with variable female function. In two populations, female plants accounted for 36–37% of the flowering plants. Female flowers were smaller and their stamens were reduced to staminodes, but their styles were significantly longer than those of hermaphrodite flowers. Energy investment in flowers and fruits for females and hermaphrodites was measured using bomb calorimetry. Females produce a greater number of less costly flowers than hermaphrodites, and invest less energy per unit in production of flowers and inflorescences. In contrast, females invest more energy per unit in production of fruits and infructescences than hermaphrodites. Females overall invest 7.3% more energy in reproduction than hermaphrodites. Female flowers were obligate out-crossers (xenogamous), with 35% of nonmanipulated, open-pollinated flowers setting fruit, comparable with fruit set among selfed hermaphrodite flowers. The breeding strategy of G. wikstroemiana most closely resembles gynodioecy. This is the first report of sexual dimorphism in Gnidia L. and sub-Saharan Thymelaeaceae.  © 2006 The Linnean Society of London, Botanical Journal of the Linnean Society , 2006, 152 , 219–233.     

Spatial Organization and Mineralization of the Basal Plate of Elasmoid Scales in Osteichthyans

In Sarcopterygii (Latimeria, Neoceratodus, Protopterus, Leptdosiren)and Amiidae (Amia) collagen fibrils of the basal plate are packedin bundles whereas they remain isolated in Teleostei. The basalplate looks like plywood, a system of superimposed layers ofparallel fibers or fibrils the directions of which rotate witha regular angle in two successive layers. The double twistedplywood is constituted of two imbricate systems, the odd andthe even, where the rotation of the fibrillar directions isright-handed in Sarcopterygii and lefthanded in Amiidae andnumerous primitive Teleostei. The orthogonal plywood, with itstwo main orthogonal fibrillar directions, characterizes theevolved Teleostei and some more primitive ones. In most teleosteanspecies, as in Amia and Protopterus, mineralization of the basalplate in elasmoid scales involves Mandl's corpuscles that mineralizewithout contact with a pre-existing calcified tissue; they growand coalesce with the neighbouring ones and fuse to the mineralizingfront. Their shape is directly influenced by the local arrangementof the collagenous fibrils. In two teleostean families (Osteoglossidaeand Mormyridae) Mandl's corpuscles are completely lacking butspreading of mineralization in the basal plate has a peculiaraspect. Whatever that may be, the various characteristic organizationsof the skeletal tissues or isopedine that constitute the basalplate of osteichthyan elasmoid scales, all are varieties ofbone tissue that have undergone more or less important specializationlinked to the general regression of dermal ossifications andto functional adaptations.