Land cover change 2002–2005 in Borneo and the role of fire derived from MODIS imagery

Borneo has experienced heavy deforestation and forest degradation during the past two decades. In this study the Moderate Resolution Imaging Spectroradiometer was used to monitor land cover change in Borneo between 2002 and 2005 in order to assess the current extent of the forest cover, the deforestation rate and the role of fire. Using Landsat and ground observation for validation it was possible to discriminate 11 land cover classes. In 2002 57% of the land surface of Borneo was covered with forest of which 74% was dipterocarp and more than 23% peat swamp forest. The average deforestation rate between 2002 and 2005 was 1.7% yr^{− 1}. The carbon-rich ecosystem of peat swamp forests showed a deforestation rate of 2.2%. Almost 98% of all deforestation occurred within a range of 5 km to the forest edge. Fire is highly correlated with land cover changes. Most fires were detected in degraded forests. Ninety-eight per cent of all forest fires were detected in the 5 km buffer zone, underlining that fire is the major driver for forest degradation and deforestation.     

Chloroplast DNA‐based studies in molecular ecology may be compromised by nuclear‐encoded plastid sequence

Ongoing genetic transfer from mitochondria and plastids into the nucleus is a well‐documented fact. While in metazoan molecular ecology the need for surveillance against pseudogene‐mediated artefacts when analysing mtDNA sequences is commonly accepted, no comparable measurements have been established for plastid‐based studies. We highlight the impact and management of nuclear mitochondrial insertions, argue that nuclear plastid sequences represent an underestimated but major factor in plant molecular ecology, and discuss potential avenues of remedy in chloroplast studies.     

An optimized protocol for the identification of diatoms,flagellated algae and pathogenic protozoa with phylochips

In the past decade, molecular probe‐based methods have proved successful in improving both the efficiency and accuracy of the identification of microorganisms, especially those that are devoid of distinct morphological features. However until recently, these methods had the major drawback of being limited to the identification of only one or just a few species at a time. With the use of DNA microarrays, it is possible to identify large numbers of taxa on a single‐glass slide, the so‐called phylochip. There are numerous microarray protocols in the literature. These protocols share the same principles, but vary in details, e.g. labelling approach or detergent concentration in the washing buffer. In this study, we show that even small variations in hybridization protocols can have a strong impact on the outcome of the microarray hybridization. An optimized protocol for species identification on phylochips is presented. The optimized protocol is the result of a joined effort of three laboratories to develop phylochips for microbial species identification.     

Interactions between fauna and sediment control the breakdown of plant matter in river sediments

1. A substantial portion of particulate organic matter (POM) is stored in the sediment of rivers and streams. Leaf litter breakdown as an ecosystem process mediated by microorganisms and invertebrates is well documented in surface waters. In contrast, this process and especially the implication for invertebrates in subsurface environments remain poorly studied. 2. In the hyporheic zone, sediment grain size distribution exerts a strong influence on hydrodynamics and habitability for invertebrates. We expected that the influence of shredders on organic matter breakdown in river sediments would be influenced strongly by the physical structure of the interstitial habitat. 3. To test this hypothesis, the influence of gammarids (shredders commonly encountered in the hyporheos) on degradation of buried leaf litter was measured in experimental systems (slow filtration columns). We manipulated the structure of the sedimentary habitat by addition of sand to a gravel‐based sediment column to reproduce three conditions of accessible pore volume. Ten gammarids were introduced in columns together with litter bags containing alder leaves at a depth of 8 cm in sediment. Leaves were collected after 28 days to determine leaf mass loss and associated microbial activity (fungal biomass, bacterial abundance and glucosidase, xylosidase and aminopeptidase activities). 4. As predicted, the consumption of buried leaf litter by shredders was strongly influenced by the sediment structure. Effective porosity of 35% and 25% allowed the access to buried leaf litter for gammarids, whereas a lower porosity (12%) did not. As a consequence, leaf litter breakdown rates in columns with 35% and 25% effective porosity were twice as high as in the 12% condition. Microbial activity was poorly stimulated by gammarids, suggesting a low microbial contribution to leaf mass loss and a direct effect of gammarids through feeding activity. 5. Our results show that breakdown of POM in subsurface waters depends on the accessibility of food patches to shredders.     

Over‐expression of bacterial γ‐glutamylcysteine synthetase (GSH1) in plastids affects photosynthesis,growth and sulphur metabolism in poplar (Populus tremula × Populus alba) dependent on the resulting γ‐glutamylcysteine and glutathione levels

We compared three transgenic poplar lines over‐expressing the bacterial γ‐glutamylcysteine synthetase (GSH1) targeted to plastids. Lines Lggs6 and Lggs12 have two copies, while line Lggs20 has three copies of the transgene. The three lines differ in their expression levels of the transgene and in the accumulation of γ‐glutamylcysteine (γ‐EC) and glutathione (GSH) in leaves, roots and phloem exudates. The lowest transgene expression level was observed in line Lggs6 which showed an increased growth, an enhanced rate of photosynthesis and a decreased excitation pressure (1‐qP). The latter typically represents a lower reduction state of the plastoquinone pool, and thereby facilitates electron flow along the electron transport chain. Line Lggs12 showed the highest transgene expression level, highest γ‐EC accumulation in leaves and highest GSH enrichment in phloem exudates and roots. This line also exhibited a reduced growth, and after a prolonged growth of 4.5 months, symptoms of leaf injury. Decreased maximum quantum yield (F_v/F_m) indicated down‐regulation of photosystem II reaction centre (PSII RC), which correlates with decreased PSII RC protein D1 (PsbA) and diminished light‐harvesting complex (Lhcb1). Potential effects of changes in chloroplastic and cytosolic GSH contents on photosynthesis, growth and the whole‐plant sulphur nutrition are discussed for each line.     

Natural variation in ozone sensitivity among Arabidopsis thaliana accessions and its relation to stomatal conductance

Genetic variation between naturally occurring populations provides a unique source to unravel the complex mechanisms of stress tolerance. Here, we have analysed O₃ sensitivity of 93 natural Arabidopsis thaliana accessions together with five O₃‐sensitive mutants to acute O₃ exposure. The variation in O₃ sensitivity among the natural accessions was much higher than among the O₃‐sensitive mutants and corresponding wild types. A subset of nine accessions with major variation in their O₃ responses was studied in more detail. Among the traits assayed, stomatal conductance (g_st) was an important factor determining O₃ sensitivity of the selected accessions. The most O₃‐sensitive accession, Cvi‐0, had constitutively high g_st, leading to high initial O₃ uptake rate and dose received during the first 30 min of exposure. Analyzing O₃‐induced changes in stress hormone concentrations indicated that jasmonate (JA) concentration was also positively correlated with leaf damage. Quantitative trait loci (QTL) mapping in a Col‐0 × Cvi‐0 recombinant inbred line (RIL) population identified three QTLs for O₃ sensitivity, and one for high water loss of Cvi‐0. The major O₃ QTL mapped to the same position as the water loss QTL further supporting the role of stomata in regulating O₃ entry and damage.