轻度支气管哮喘儿童的诱导痰菌群特征

目的探讨轻度支气管哮喘儿童的诱导痰菌群特征及临床意义。方法纳入年龄为6~12周岁于2018年11月至2019年1月在深圳市儿童医院呼吸科门诊定期复诊的轻度支气管哮喘患儿51例(哮喘组),留取诱导痰,匹配同年龄段97例健康无过敏儿童的口咽拭子作为对照。诱导痰及口咽拭子提取总DNA并扩增,对16S rRNA基因进行高通量测序并对测序结果进行生物信息学分析。结果NMDS分析结果显示哮喘组与健康对照组研究对象菌群结构存在差异;哮喘组的诱导痰菌群多样性指数(Shannon index)高于健康对照组(2.34±0.53 vs 1.87±0.50,P<0.05)。门水平分析显示,哮喘组与健康对照组的菌群均主要为厚壁菌门(38.34%vs 44.74%,P<0.05)、变形杆菌门(31.14%vs 19.78%,P<0.05)、拟杆菌门(14.59%vs 20.52%,P<0.05)、放线菌门(10.41%vs 7.85%,P<0.05)和梭杆菌门(2.82%vs 6.67%,P<0.05),但两组之间的构成比有明显差异。与健康对照组相比,在属水平上哮喘组韦荣球菌属(5.27%vs 8.96%)、普雷沃菌属(8.38%vs 17.35%)、罗斯菌属(1.50%vs 5.46%)、纤毛菌属(1.37%vs 4.39%)等非条件致病菌属比例明显下降(均P<0.05),而嗜血杆菌属(9.83%vs 6.17%)、卟啉单胞菌属(2.48%vs 1.41%)、莫拉菌属(5.66%vs 0.42%)、诺卡菌属(3.40%vs 0.00%)等条件致病菌属比例明显上升(均P<0.05)。结论尽管轻度支气管哮喘患儿已临床控制,但诱导痰内菌群仍存在结构紊乱。气道菌群紊乱可能是儿童支气管哮喘的发病机制之一。除了致病菌属外,非致病菌菌属的构成变化可能也是儿童哮喘的一个发生机制。     

解磷菌对设施土壤金属元素有效含量及黄瓜秧苗金属元素吸收量的影响

通过向设施土壤中添加解磷菌和秸秆,达到活化土壤中作物所需金属元素的含量,促进作物对中微量元素吸收的目的。试验设置对照、秸秆、解磷菌、解磷菌+秸秆4个处理,在不同时间测试土壤及秧苗中钙、镁、铜、铁、锌等的含量,确定解磷菌及秸秆对设施土壤金属元素含量及黄瓜秧苗吸收量的影响。试验结果表明,秸秆、解磷菌、秸秆+解磷菌处理能明显增加黄瓜秧苗吸收钙、镁、铁、铜的能力,对锌的吸收没有影响,其中秸秆+解磷菌处理对黄瓜秧苗吸收钙、镁、铜影响最大,促进作用分别达到6.26%、8.25%和11.57%,3种处理对设施土壤中有效钙、镁、铁的含量没有影响,但是能明显提高土壤中有效铜、锌的含量,盛果后期有效铜含量分别比对照提高12.19%、15.41%、16.49%,盛果后期有效锌含量分别比对照区提高38.8%、33.26%、56.81%。     

Meta‐replication,sampling bias,and multi‐scale model selection: A case study on snow leopard (Panthera uncia) in western China

Replicated multiple scale species distribution models (SDMs) have become increasingly important to identify the correct variables determining species distribution and their influences on ecological responses. This study explores multi‐scale habitat relationships of the snow leopard (Panthera uncia) in two study areas on the Qinghai–Tibetan Plateau of western China. Our primary objectives were to evaluate the degree to which snow leopard habitat relationships, expressed by predictors, scales of response, and magnitude of effects, were consistent across study areas or locally landcape‐specific. We coupled univariate scale optimization and the maximum entropy algorithm to produce multivariate SDMs, inferring the relative suitability for the species by ensembling top performing models. We optimized the SDMs based on average omission rate across the top models and ensembles’ overlap with a simulated reference model. Comparison of SDMs in the two study areas highlighted landscape‐specific responses to limiting factors. These were dependent on the effects of the hydrological network, anthropogenic features, topographic complexity, and the heterogeneity of the landcover patch mosaic. Overall, even accounting for specific local differences, we found general landscape attributes associated with snow leopard ecological requirements, consisting of a positive association with uplands and ridges, aggregated low‐contrast landscapes, and large extents of grassy and herbaceous vegetation. As a means to evaluate the performance of two bias correction methods, we explored their effects on three datasets showing a range of bias intensities. The performance of corrections depends on the bias intensity; however, density kernels offered a reliable correction strategy under all circumstances. This study reveals the multi‐scale response of snow leopards to environmental attributes and confirms the role of meta‐replicated study designs for the identification of spatially varying limiting factors. Furthermore, this study makes important contributions to the ongoing discussion about the best approaches for sampling bias correction.     

丙酮丁醇梭菌(Clostridium acetobutylicum)原生质体融合育种研究

为了提高丙酮丁醇梭菌(Clostridium acetobutylicum)的丁醇耐受能力和培养基总糖产丁醇的转化率,通过原生质体融合的方法,研究了溶菌酶浓度及其作用时间、再生培养基种类、55℃条件下菌体致死时间、不同PEG分子量以及作用时间、Ca^2+和Mg^2+不同的添加量对丙酮丁醇梭菌原生质体制备、融合、再生的影响,得到了一套比较系统的丙酮丁醇梭菌的原生质体融合条件,同时通过气相色谱检测了融合菌的产溶剂能力并计算总糖转化率。结果显示,最终得到的215I菌株的总糖转化率比原始菌株提高了34.7%,产丁醇能力比原始菌株提高了32.2%,并且发现1株融合菌能产生新物质。原生质体融合方法在丙酸丁醇梭菌育种方面有广泛的应用潜力,通过融合得到的菌株为丁醇生产奠定了基础。     

Five candidate biomarkers associated with the diagnosis and prognosis of cervical cancer

Purpose: Cervical cancer (CC) is one of the most general gynecological malignancies and is associated with high morbidity and mortality. We aimed to select candidate genes related to the diagnosis and prognosis of CC.Methods: The mRNA expression profile datasets were downloaded. We also downloaded RNA-sequencing gene expression data and related clinical materials from TCGA, which included 307 CC samples and 3 normal samples. Differentially expressed genes (DEGs) were obtained by R software. GO function analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis of DEGs were performed in the DAVID dataset. Using machine learning, the optimal diagnostic mRNA biomarkers for CC were identified. We used qRT-PCR and Human Protein Atlas (HPA) database to exhibit the differences in gene and protein levels of candidate genes.Results: A total of 313 DEGs were screened from the microarray expression profile datasets. DNA methyltransferase 1 (DNMT1), Chromatin Assembly Factor 1, subunit B (CHAF1B), Chromatin Assembly Factor 1, subunit A (CHAF1A), MCM2, CDKN2A were identified as optimal diagnostic mRNA biomarkers for CC. Additionally, the GEPIA database showed that the DNMT1, CHAF1B, CHAF1A, MCM2 and CDKN2A were associated with the poor survival of CC patients. HPA database and qRT-PCR confirmed that these genes were highly expressed in CC tissues.Conclusion: The present study identified five DEmRNAs, including DNMT1, CHAF1B, CHAF1A, MCM2 and Kinetochore-related protein 1 (KNTC1), as potential diagnostic and prognostic biomarkers of CC.     

GINS2 was regulated by lncRNA XIST/miR-23a-3p to mediate proliferation and apoptosis in A375 cells

Molecular and Cellular Biochemistry - Melanoma ranks second in aggressive tumors, and the occurrence of metastasis in melanoma results in a persistent drop in the survival rate of patients....     

The role of exosomal microRNAs in central nervous system diseases

Molecular and Cellular Biochemistry - MicroRNAs (miRNA), endogenous non-coding RNAs approximately 22 nucleotides long, regulate gene expression by mediating translational inhibition or mRNA...     

弗里熊蜂蜜罐中糖液成分分析

【目的】熊蜂是众多植物的重要传粉昆虫,以采集并贮藏花蜜和花粉为主要食物。本研究旨在探究熊蜂的营养需求及明确其对采集的食物是否存在酿制过程。【方法】利用白砂糖溶液(糖浓度50%)饲喂弗里熊蜂Bombus friseanus蜂群,收集并检测其贮藏在蜜罐中1~7 d的糖液,作为处理组样品;同时将上述白砂糖溶液置于灭菌离心管中,排除熊蜂取食,作为对照组样品,测定贮藏期间处理组和对照组糖液的pH值、糖浓度、糖组分及α-淀粉酶和转化酶活性。【结果】弗里熊蜂B. friseanus贮藏在蜜中1~7d的糖液pH值平均为3.74±0.13,显著低于对照组(6.55±0.15);糖浓度与贮藏时间显著正相关,贮藏6d后糖浓度显著高于贮藏1~3 d时的;糖液组分更加丰富,除蔗糖外利用HPLC还检出果糖、葡萄糖、麦芽糖和海藻糖,贮藏4~5 d的糖液中己糖含量极显著高于贮藏1~3 d和6~7 d时的,己糖和麦芽糖含量分别与蔗糖含量极显著负相关,总糖中果糖和麦芽糖含量与贮藏时间极显著负相关,葡萄糖、蔗糖和海藻糖的含量分别与贮藏时间极显著正相关。贮藏6 d的糖液中α-淀粉酶活性显著高于其他时间,其他贮藏时间样品间α-淀粉酶活性差异不显著,而所有样本的转化酶活性在21.17~38.05 U/g FW之间,随贮藏时间的延长差异不显著。【结论】弗里熊蜂B. friseanus采集人工饲喂的糖溶液贮藏在蜜罐中,经其加工后发生了物理和生物化学变化,揭示熊蜂存在酿蜜能力。本研究的结果为熊蜂生物学及繁育研究提供了参考。