Evolution of Dactylorhiza baltica (Orchidaceae) in European Russia: evidence from molecular markers and morphology

Four plastid markers, four nuclear markers and 14 morphometric characters were used in this study to investigate the evolution of Dactylorhiza baltica (Orchidaceae) in European Russia. In total, 98, 214 and 775 samples from 85, 112 and 121 populations were involved in the combined and separate molecular and morphometric analyses, respectively. In most cases, morphometric measures were done on exactly the same plants that were used for DNA studies. Dactylorhiza baltica plants from European Russia are most probably the products of several recent and mostly local hybridization events between the diploids D. fuchsii and D. incarnata , which have each been the maternal parent on different occasions. Considerable introgression into the parental diploids via the allopolyploid D. baltica is also hypothesized. Several morphological characters, such as length of the lip lateral lobe and the length of longest leaf, were found to be robust and could be useful in identification of D. baltica . This study demonstrates the advantage of 'combined' techniques, especially in the case of taxonomically complex taxa.  © 2005 The Linnean Society of London, Botanical Journal of the Linnean Society , 2005, 147 , 257–274.     

Mycosin-1, a subtilisin-like serine protease of Mycobacterium tuberculosis, is cell wall-associated and expressed during infection of macrophages

Background  

Exported proteases are commonly associated with virulence in bacterial pathogens, yet there is a paucity of information regarding their role in Mycobacterium tuberculosis. There are five genes (mycP1-5) present within the genome of Mycobacterium tuberculosis H37Rv that encode a family of secreted, subtilisin-like serine proteases (the mycosins). The gene mycP1 (encoding mycosin-1) was found to be situated 3700 bp (four ORF's) from the RD1 deletion region in the genome of the attenuated vaccine strain M. bovis BCG (bacille de Calmette et Guérin) and was selected for further analyses due to the absence of expression in this organism.     

Hemotherapy in suscepted dermatomyositis

Thromboendarterectomy appears to be the procedure of choice in the surgical treatment of localized obstructive arteriosclerosis in the aortoiliac area in a relatively young patient. Clinical follow-up over a three-year period demonstrated maintenance of a maximum benefit and suggested that the endarterectomized area will remain patent for the duration of the patient's life. In younger patients, it seems logical to reestablish vascular continuity with their own tissues by a careful endarterectomy rather than by homograft replacement because of the reported incidence of late thrombosis in the latter."Diffuse" arteriosclerosis definitely limits the potential benefit or effectiveness of thromboendarterectomy. However, lumbar sympathectomy may still bring about definite benefit in particular cases. The careful selection of patients with localized or segmental arteriosclerosis and well developed collateral circulation would seem to be the greatest factor in obtaining a maximum result by thromboendarterectomy.     

Epigenetic reprogramming in the mammalian embryo: struggle of the clones

During preimplantation development in mammals, distinct epigenetic marks on oocyte and sperm DNA are remodeled to an embryonic pattern. A recent study examining global methylation of repetitive elements in various mammals showed that the reprogramming that occurs during normal preimplantation development is aberrant in cloned embryos.     

Can we bring Madagascar's critically endangered palms back from the brink? Genetics,ecology and conservation of the critically endangered palm Beccariophoenix madagascariensis

Madagascar has a highly distinctive flora and is one of the world biodiversity hot spots. There are more than 170 species of palms, the majority of which are vulnerable, endangered or critically endangered endemics. Palms are utilized for many human uses, many of which lead to plant death or seed harvesting. Combined with reduced populations resulting from extensive forest clearing, those species which are harvested from the wild are under additional threat of extinction. Species recovery programmes have the potential to save some of the most iconic species before it is too late. This study documented the current known populations of the critically endangered palm Beccariophoenix madagascariensis, a species utilized for both local and international purposes. The study specifically investigated the genetic diversity and inbreeding within populations and the potential differentiation between populations and with the newly described species B. alfredii . We found that despite critically small population sizes there was considerable genetic diversity within populations. We also found that ecologically and or geographically distinct populations were genetically distinct. Populations within 3 km of each other exhibited considerable gene flow, probably owing to seed dispersal. The populations were inbred but reproductive viability had been maintained. Conservation and recovery options are discussed. © 2007 The Linnean Society of London, Botanical Journal of the Linnean Society , 2007, 154 , 589–608.     

Parentage of endemic Sorbus L. (Rosaceae) species in the British Isles: evidence from plastid DNA

The parentage of polyploid Sorbus species in the British Isles was investigated using plastid DNA microsatellites. Four hundred and fifty-three samples from 30 taxa were screened using six microsatellite fragments, which gave 28 haplotypes. The haplotypes formed groups clearly related to the ancestral diploids Sorbus aria , Sorbus aucuparia , and Sorbus torminalis . Species in the Sorbus aria group all had Aria haplotypes (with the exception of one English S. aria ), species in the Sorbus anglica group had an Aucuparia haplotype, and species in the Sorbus latifolia group had a Torminalis haplotype. Sorbus intermedia had an Aucuparia haplotype. This indicated that the hybridization events that led to the formation of species in the S. anglica and S. latifolia groups usually did so with S. aria s.l . as the pollen-donating (paternal) parent. The polyploids S. anglica , Sorbus bristoliensis , Sorbus croceocarpa , Sorbus decipiens , Sorbus devoniensis , Sorbus hibernica , Sorbus lancastriensis , Sorbus leptophylla , Sorbus leyana , Sorbus minima , Sorbus rupicola , Sorbus subcuneata , Sorbus vexans , Sorbus whiteana , Sorbus wilmottiana , and three unnamed taxa may each be derived from a single maternal lineage. The polyploids Sorbus eminens , Sorbus porrigentiformis , and S. latifolia have multiple maternal lineages. The two primary diploid hybrids S . ×  thuringiaca and S . ×  vagensis have arisen many times independently.  © 2007 The Linnean Society of London, Botanical Journal of the Linnean Society , 2007, 154 , 291–304.     

Evolution by leaps: gene duplication in bacteria

Background  

Sequence related families of genes and proteins are common in bacterial genomes. In Escherichia coli they constitute over half of the genome. The presence of families and superfamilies of proteins suggest a history of gene duplication and divergence during evolution. Genome encoded protein families, their size and functional composition, reflect metabolic potentials of the organisms they are found in. Comparing protein families of different organisms give insight into functional differences and similarities.     

The influence of catchment land use on stream integrity across multiple spatial scales

1. Despite wide recognition of the need for catchment-scale management to ensure the integrity of river ecosystems, the science and policy basis for joint management of land and water remains poorly understood. An interdisciplinary case study of a river basin in south-eastern Michigan is presented. 2. The River Raisin drains an area of 2776 km², of which some 70% is agricultural land. The upper basin consists of till and outwash, and both topography and land use/cover are diverse. The lower basin consists of fine textured lake deposits, is of low relief, and land use is primarily agricultural. 3. The River Raisin basin historically was a region of oak-savannah and wetlands. It was deforested, drained and converted to farmland during the mid-nineteenth century. Human population reached a plateau at about 1880, and then underwent a second period of growth after 1950, mainly in small urban areas. More recently, the amount of agricultural land has declined and forested land has increased, in accord with a general decline in farming activity. 4. It could be suggested that the influence of land use on stream integrity is scale-dependent. Instream habitat structure and organic matter inputs are determined primarily by local conditions such as vegetative cover at a site, whereas nutrient supply, sediment delivery, hydrology and channel characteristics are influenced by regional conditions, including landscape features and land use/cover at some distance upstream and lateral to stream sites. 5. Sediment concentrations measured during low flows were higher in areas of greater agriculture. In a comparison of two subcatchments, sediment yields were up to ten times greater in the more agricultural location, in response to similar storm events. A distributed parameter model linked to a geographical information system predicted that an increase in forested land cover would result in dramatic declines in runoff and sediment and nutrient yields. 6. Habitat quality and biotic integrity varied widely among individual stream sites in accord with patterns in land use/cover. Extent of agricultural land at the subcatchment scale was the best single predictor of local stream conditions. Local riparian vegetation was uncorrelated with overall land use and was a weak secondary predictor of habitat quality and biotic integrity. 7. Investigation of the regulatory agencies involved in land and water management in the basin revealed a complex web of overlapping political jurisdictions. Most land-use decision-making occurs at the local level of township, city or village. Unfortunately, local decision-making bodies typically lack the information and jurisdictional authority to influence up- and downstream events.