QPath: a method for querying pathways in a protein-protein interaction network

Background  

Sequence comparison is one of the most prominent tools in biological research, and is instrumental in studying gene function and evolution. The rapid development of high-throughput technologies for measuring protein interactions calls for extending this fundamental operation to the level of pathways in protein networks.     

Analysis of intra-uterine fluid motion induced by uterine contractions

Evaluation of the fluid flow pattern in a non-pregnant uterus is important for understanding embryo transport in the uterus. Fertilization occurs in the fallopian tube and the embryo (fertilized ovum) enters the uterine cavity within 3 days of ovulation. In the uterus, the embryo is conveyed by the uterine fluid for another 3 to 4 days to a successful implantation site at the upper part of the uterus. Fluid movements within the uterus may be induced by several mechanisms, but they seem to be dominated by myometrial contractions. Intra-uterine fluid transport in a sagittal cross-section of the uterus was simulated by a model of wall-induced fluid motion within a two-dimensional channel. The time-dependent fluid pattern was studied by employing the lubrication theory. A comprehensive analysis of peristaltic transport resulting from symmetric and asymmetric contractions is presented for various displacement waves on the channel walls. The results provide information on the flow field and possible trajectories by which an embryo may be transported before implantation at the uterine wall.     

Externally accumulated flavonoids in three Mediterranean Ononis species

The Mediterranean Ononis species, O. fruticosa, O. natrix subsp. ramosissima and O. tridentata, have been analyzed for their exudate flavonoids. More than 20 flavonoid aglycones were identified, some of which are rather rare natural compounds. One of them, namely hypolaetin-8,3',4'-trimethyl ether, had been found only once before. The results are presented in a table along with literature data, and the chemotaxonomic impact of the flavonoid patterns is discussed.     

Evolutionary autonomous agents: a neuroscience perspective

In this article, I discuss the use of neurally driven evolutionary autonomous agents (EAAs) in neuroscientific investigations. Two fundamental questions are addressed. Can EAA studies shed new light on the structure and function of biological nervous systems? And can these studies lead to the development of new tools for neuroscientific analysis? The value and significant potential of EAA modelling in both respects is demonstrated and discussed. Although the study of EAAs for neuroscience research still faces difficult conceptual and technical challenges, it is a promising and timely endeavour.     

Five trypanosomatid species of insects distinguished by isoenzymes.

Blastocrithidia culicis, Crithidia deanei, Crithidia fasciculata, Herpetomonas samuelpessoai, Leptomonas seymouri and Leishmania tarentolae grown in cultures were compared by electrophoretic mobility for isoenzymes in 6 enzymes. All species were found distinct in these characteristics. Endosymbiotic C. deanei, which was identical to the aposymbiotic C. deanei in 5 enzymes, had an extra band in aspartate aminotransferase. No differences in isoenzymes were found between members of one species maintained in 2 different culture media.     

Exudate flavonoids of eight species of Ceanothus (Rhamnaceae)

Leaf glands of Ceanothus species excrete a lipophilic material that contains a variety of flavonoids. Most of these are aglycones, but some glycosides were also observed. Seven out of eight species exhibit flavonols, whereas flavones are excreted by only one species. Four species produce flavanones and dihydroflavonols; one excretes a remarkable quantity of flavonol glycosides. The exudate flavonoids thus form different patterns that might be characteristic for different Ceanothus species.     

Epicuticular flavonoids of some Scrophulariaceae

Twenty-two species of Scophulariaceae have been found to accumulate flavonoid aglycones externally on their leaves and stems. They belong to the genera Anarrhinum, Antirrhinum, Asarina, Calceolaria, Mimulus, and Odontites. Most of the flavonoids are methylated flavones and flavonols, some with 6-O and/or 8-O-substitution. One of them is the natural isobutyryl ester of a rare flavone.