Natural Variation in Grain Selenium Concentration of Wild Barley, <Emphasis Type="Italic">Hordeum spontaneum</Emphasis>, Populations from Israel

Wild barley (Hordeum spontaneum), the progenitor of cultivated barley, is an important genetic resource for cereal improvement. Selenium (Se) is an essential trace mineral for humans and animals with antioxidant, anticancer, antiarthropathy, and antiviral effects. In the current study, the grain Se concentration (GSeC) of 92 H. spontaneum genotypes collected from nine populations representing different habitats in Israel was investigated in the central area of Guizhou Province, China. Remarkable variations in GSeC were found between and within populations, ranging from 0 to 0.387 mg kg⁻¹ among the 92 genotypes with an average of 0.047 mg kg⁻¹. Genotype 20_C from the Sede Boqer population had the highest GSeC, while genotype 25_1 from the Atlit population had the lowest. The mean value of GSeC in each population varied from 0.010 to 0.105 mg kg⁻¹. The coefficient of variation for each population ranged from 12% to 163%. Significant correlations were found between GSeC and 12 ecogeographical factors out of 14 studied. Habitat soil type also significantly affected GSeC. The wild barley exhibited wider GSeC ranges and greater diversity than its cultivated counterparts. The higher Se grain concentrations found in H. spontaneum populations suggest that wild barley germplasm confer higher abilities for Se uptake and accumulation, which can be used for genetic studies of barley nutritional value and for further improvement of domesticated cereals.     

Fight versus flight: Body temperature influences defensive responses of lizards

In laboratory studies we determined that the defensive responses used by two agamid lizards, Agama savignyi and A. pallida, change as a function of body temperature. At high body temperatures, these lizards flee rapidly from predators. At lower body temperatures, which reduce sprint speed, the lizards rarely run but instead hold their ground and attack aggressively. This temperature-dependent switch in defensive behaviour may have evolved because cold lizards that live in open habitats would have little chance of outrunning predators. Defensive behaviours of animals may in general be sensitive to physiological variables that influence locomotor performance.     

A sensitivity analysis approach for the causal hazard ratio in randomized and observational studies

The hazard ratio (HR) is often reported as the main causal effect when studying survival data. Despite its popularity, the HR suffers from an unclear causal interpretation. As already pointed out in the literature, there is a built-in selection bias in the HR, because similarly to the truncation by death problem, the HR conditions on post-treatment survival. A recently proposed alternative, inspired by the Survivor Average Causal Effect, is the causal HR, defined as the ratio between hazards across treatment groups among the study participants that would have survived regardless of their treatment assignment. We discuss the challenge in identifying the causal HR and present a sensitivity analysis identification approach in randomized controlled trials utilizing a working frailty model. We further extend our framework to adjust for potential confounders using inverse probability of treatment weighting. We present a Cox-based and a flexible non-parametric kernel-based estimation under right censoring. We study the finite-sample properties of the proposed estimation methods through simulations. We illustrate the utility of our framework using two real-data examples.     

Genetic polymorphisms of α- and β-amylase isozymes in wild emmer wheat,Triticum dicoccoides,in Israel

Summary - and -amylase isozyme diversity was studied electrophoretically by thin-layer polyacrylamide gel isoelectrofocusing in the tetraploid wild emmer wheat, Triticum dicoccoides, the progenitor of all cultivated wheats. We analyzed 225 plants from 23 populations encompassing the ecological spectrum of T. dicoccoides in Israel. The results were as follows: (a) Band and multilocus genotype polymorphisms abound and vary within and between the four amylase components: malt, green (-amylases), and dry and germinating seeds (-amylases). (b) The number of bands of malt, green, and dry and germinating seeds were 20, 6, 11 and 13, respectively, generating 40, 6, 51, and 51 patterns or multilocus genotypes (MGP), respectively. The MGPs vary drastically within and between populations, from monomorphic in some populations with a single pattern to highly polymorphic ones, (c) Mean H _e values for malt, green, and germinating and dry seeds are 0.053, 0.055, 0.088, and 0.077, respectively; mean number of bands per individual was 11.8, 4.4, 7.6, and 4.0, respectively, (d) The percentages of 50 bands and 148 multilocus genotype patterns (MGP) (in parenthesis) were classified into widespread, sporadic, and localized: 84.4 (10.8), 8.9 (12.2), 6.7 (77.0), respectively. Notably, 89.2% of the patterns were not widespread, but sporadic and localized, (e) The mean value of genetic distances among populations (Nei's D) for the four amylase groups is D = 0.136, 0.175, 0.288 and 0.307, respectively, not displaying geographical correlates. (f) Most of the - and -amylase diversity is between populations (G _st = 68–75%). (g) Significant environmental correlates occur between either bands or patterns and climatic diversity (water and primarily temperature factors). (h) Significant associations of multilocus amylase bands occur across Israel. Like-wise, significant gametic phase disequilibria, D, occur within populations and are positively correlated with climatic variables, primarily that of temperature, (i) Discriminant analyses correctly classified (95–100%) the 23 wild emmer populations into their ecogeographical region and soil type. (j) Autocorrelation analysis showed that there is no correlation between bands and geographic distance and excluded migration as a major factor of amylase differentiation.These results suggest that diversifying climatic and edaphic natural selection rather than stochastisity or migration is the major evolutionary force driving amylase differentiation at both the single and multilocus levels. Furthermore, wild emmer harbors high levels of - and -amylase diversity both as single bands and as multilocus adaptive genetic patterns. These are exploitable both as genetic markers for quantitative loci (QTLs) and as adaptive genetic resources to improve wheat germination and growth through classical breeding and/or biotechnology.     

Adaptive physiological variation in nonshivering thermogenesis and its significance in speciation

Summary Nonshivering thermogenesis (NST) magnitude was studied in the four chromosomal species of subterranean mole rats of theSpalax ehrenbergi superspecies in Israel. The four species show a distribution pattern which correlates with increasing aridity. The 2n=52 species inhabits the cold and humid regions, 2n=54 cold and dry, 2n-58 warm and humid, and 2n=60 the more arid regions in which temperatures fluctuate daily and annually. NST was measured as the ratio between maximal oxygen due to noradrenaline injection and minimal measured in anaesthetized animals.The chromosomal species 2n=60 from semiarid and arid habitats has the highest NST value. This fact emerges from the low Basal Metabolic Rate (BMR) of this species relative to all the other three species. A linear correlation was found between NST magnitude and the average daily range of temperature during June and September.We conclude that speciation of theS. ehrenbergi complex in Israel has thermoregulatory correlates such as heat production by NST, among others. The level of NST appears to be an adaptive physiological characteristic in the ecological speciation of subterranean mole rats.     

Microgeographic edaphic differentiation in allozyme polymorphisms of wild barley (Hordeum spontaneum,Poaceae)

Allozymic variation in proteins encoded by 22 loci was analyzed electrophoretically in 278 individual plants of wild barley,Hordeum spontaneum, the progenitor of cultivated barley, in four 100 meter transects, in Israel, each equally subdivided into basalt and terra rossa soil types. Significant differentiation according to soil was found in 9 alleles. Our results suggest that allozyme polymorphisms in wild barley are at least partly adaptive, and differentiate by edaphic natural selection rather than by stochastic processes, and/or neutrality of allozymic variants.     

Adaptive microgeographic differentiation of allozyme polymorphism in landsnails

To elucidate the forees maintaining protein polymorphisms, microgeographic differentiation in proteins, encoded by 30 loci, was tested in 285 individuals comprising 3 species of landsnails in Israel. Each test consisted of 2 close subpopulations: one from the drier and warmer south-facing slope and the other from the opposite wetter and cooler north-facing slope. The 5 tests involved 2 of Buliminus labrosus in Mediterranean Count Carmel; 1 of Sphincterochila zonata in the northern, and 2 of S. prophetarum in the central Negev desert. The results indicate significant allele differences between the two slopes in several loci in each of the 5 local tests, involving primarily esterases (Est), aspartate aminotransferase (Aat) and leucine amino peptidases (Lap). The differential slope patterns appear to be adaptive, and are presumably maintained by microclimatic diversifying selection.     

Genetic variation and climatic selection in the lizard Agama stellio in Israel and Sinai

Summary Allozymic variation in proteins encoded by 25 loci was analyzed electrophoretically in 242 adult specimens representing nine populations of the Levantine lizard, Agama stellio, comprising two subspecies: the Mediterranean A. stellio subsp., and the desert-inhabiting A. stellio brachydactyla from the Negev and Sinai. Likewise, four body traits were measured in the same populations. The nine populations were sampled along a general southward transect of increasing aridity. Agama stellio is above average in both polymorphism, P, and heterozygosity, H, as compared to other reptiles and vertebrates in general, displaying levels of genetic variation characterizing habitat generalist vertebrates. In the populations studied no fixation of alternative alleles was found in any of the 25 loci: rather the commonest allele was either fixed or predominated in 23 of 25 loci examined. Eleven loci (44%) were monomorphic in all nine populations. However, of the remaining 14 polymorphic loci, eight were strongly polymorphic displaying distinct genetic differentiation between populations. Genetic diversity (indexed by P and H) displayed geographic variation and was slightly higher in A.s. brachydactyla than in A. stellio subsp. Nevertheless, genic similarity between populations was high. A statistically significant amount of morphological variation between localities was found for all body characters. In general, body size increased southwards and eastwards with aridity.Selection at some loci is suggested by significant deviation from Hardy-Weinberg expectations and possibly by excess heterogeneity of effective inbreeding coefficients, F_e. Furthermore, allozymic variation at seven loci (Ldh-1, Idh-1, 6-Pgd-1, Aat-1, Pgm-2, Pept-1, and Trf) and geographic variation in body size and weight were significantly correlated with, and predictable by, climatic variables, primarily by water availability and secondarily by temperature. Finally, allozymic and morphological variations were partly correlated.The spatial patterns and ecological correlates of genic and morphological variations in Agama stellio in Israel and Sinai suggest that at least some proteins and body size differentiate geographically and appear to be adaptive, presumably with respect to factors affecting the availability of water.