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101.
Gene expression profiles can be regarded as sums of simpler modes, analogous to the modes of a vibrating violin string. Decomposition of temporal gene expression profiles into modes by singular value decomposition (SVD) was reported before, but the question as to what degree the SVD modes can be interpreted in terms of biology remains open. We report and compare the results of SVD of published datasets from hippocampal development, neuronal differentiation in vitro, and a control time-series hippocampal dataset. We demonstrate that the first SVD mode reflects the magnitude of expression, interpretable on the Affymetrix platform. In the datasets from gene profiling of hippocampal development and neuronal differentiation, the second mode reflects a monotonous change in expression, either up- or down-regulation, in the time course of experiment. We demonstrate that the top two SVD modes are conserved between datasets and therefore, likely reflect properties of the underlying system (gene expression in hippocampus) rather than of a particular experiment or dataset. Our results also indicate that the magnitude of expression, and the direction of change in expression during hippocampal development, are uncorrelated, suggesting that they are regulated by largely independent mechanisms. 相似文献
102.
Harald Biessmann Evi Andronopoulou Max R. Biessmann Vassilis Douris Spiros D. Dimitratos Elias Eliopoulos Patrick M. Guerin Kostas Iatrou Robin W. Justice Thomas Kr?ber Osvaldo Marinotti Panagiota Tsitoura Daniel F. Woods Marika F. Walter 《PloS one》2010,5(3)
Haematophagous insects are frequently carriers of parasitic diseases, including malaria. The mosquito Anopheles gambiae is the major vector of malaria in sub-Saharan Africa and is thus responsible for thousands of deaths daily. Although the role of olfaction in A. gambiae host detection has been demonstrated, little is known about the combinations of ligands and odorant binding proteins (OBPs) that can produce specific odor-related responses in vivo. We identified a ligand, indole, for an A. gambiae odorant binding protein, AgamOBP1, modeled the interaction in silico and confirmed the interaction using biochemical assays. RNAi-mediated gene silencing coupled with electrophysiological analyses confirmed that AgamOBP1 binds indole in A. gambiae and that the antennal receptor cells do not respond to indole in the absence of AgamOBP1. This case represents the first documented instance of a specific A. gambiae OBP–ligand pairing combination, demonstrates the significance of OBPs in odor recognition, and can be expanded to the identification of other ligands for OBPs of Anopheles and other medically important insects. 相似文献
103.
Tiago M. Malaquias Carolina Silveira Wouter Aerts Friedl De Groote Greta Dereymaeker Jos Vander Sloten 《Computer methods in biomechanics and biomedical engineering》2017,20(2):153-159
Multibody simulations of human motion require representative models of the anatomical structures. A model that captures the complexity of the foot is still lacking. In the present work, two detailed 3D multibody foot-ankle models generated based on CT scans using a semi-automatic tool are described. The proposed models consists of five rigid segments (talus, calcaneus, midfoot, forefoot and toes), connected by five joints (ankle, subtalar, midtarsal, tarsometatarsal and metatarsophalangeal), one with 15DOF and the other with 8DOF. The calculated kinematics of both models were evaluated using gait trials and compared against literature, both presenting realistic results. An inverse dynamic analysis was performed for the 8DOF model, again presenting feasible dynamic results. 相似文献
104.
Sandra Skowronek Michael Ewald Maike Isermann Ruben Van De Kerchove Jonathan Lenoir Raf Aerts Jens Warrie Tarek Hattab Olivier Honnay Sebastian Schmidtlein Duccio Rocchini Ben Somers Hannes Feilhauer 《Biological invasions》2017,19(1):239-254
Reliable distribution maps are crucial for the management of invasive plant species. An alternative to traditional field surveys is the use of remote sensing data, which allows coverage of large areas. However, most remote sensing studies on invasive plant species focus on mapping large stands of easily detectable study species. In this study, we used hyperspectral remote sensing data in combination with field data to derive a distribution map of an invasive bryophyte species, Campylopus introflexus, on the island of Sylt in Northern Germany. We collected plant cover data on 57 plots to calibrate the model and presence/absence data of C. introflexus on another 150 plots for independent validation. We simultaneously acquired airborne hyperspectral (APEX) images during summer 2014, providing 285 spectral bands. We used a Maxent modelling approach to map the distribution of C. introflexus. Although C. introflexus is a small and inconspicuous species, we were able to map its distribution with an overall accuracy of 75 %. Reducing the sampling effort from 57 to 7 plots, our models performed fairly well until sampling effort dropped below 12 plots. The model predicts that C. introflexus is present in about one quarter of the pixels in our study area. The highest percentage of C. introflexus is predicted in the dune grassland. Our findings suggest that hyperspectral remote sensing data have the potential to provide reliable information about the degree of bryophyte invasion, and thus provide an alternative to traditional field mapping approaches over large areas. 相似文献
105.
106.
Manalo DJ Baek JH Buehler PW Struble E Abraham B Alayash AI 《Biochemical and biophysical research communications》2011,416(3-4):421-426
107.
As a result of low decomposition rates, high-latitude ecosystems store large amounts of carbon. Litter decomposition in these
ecosystems is constrained by harsh abiotic conditions, but also by the absence of macro-detritivores. We have studied the
potential effects of their climate change-driven northward range expansion on the decomposition of two contrasting subarctic
litter types. Litter of Alnus incana and Betula pubescens was incubated in microcosms together with monocultures and all possible combinations of three functionally different macro-detritivores
(the earthworm Lumbricus rubellus, isopod Oniscus asellus, and millipede Julus scandinavius). Our results show that these macro-detritivores stimulated decomposition, especially of the high-quality A. incana litter and that the macro-detritivores tested differed in their decomposition-stimulating effects, with earthworms having
the largest influence. Decomposition processes increased with increasing number of macro-detritivore species, and positive
net diveristy effects occurred in several macro-detritivore treatments. However, after correction for macro-detritivore biomass,
all interspecific differences in macro-detritivore effects, as well as the positive effects of species number on subarctic
litter decomposition disappeared. The net diversity effects also appeared to be driven by variation in biomass, with a possible
exception of net diversity effects in mass loss. Based on these results, we conclude that the expected climate change-induced
range expansion of macro-detritivores into subarctic regions is likely to result in accelerated decomposition rates. Our results
also indicate that the magnitude of macro-detritivore effects on subarctic decomposition will mainly depend on macro-detritivore
biomass, rather than on macro-detritivore species number or identity. 相似文献
108.
109.
110.
B. Vanhooydonck R. S. James J. Tallis P. Aerts Z. Tadic K. A. Tolley G. J. Measey A. Herrel 《Proceedings. Biological sciences / The Royal Society》2014,281(1777)
Trade-offs arise when two functional traits impose conflicting demands on the same design trait. Consequently, excellence in one comes at the cost of performance in the other. One of the most widely studied performance trade-offs is the one between sprint speed and endurance. Although biochemical, physiological and (bio)mechanical correlates of either locomotor trait conflict with each other, results at the whole-organism level are mixed. Here, we test whether burst (speed, acceleration) and sustained locomotion (stamina) trade off at both the isolated muscle and whole-organism level among 17 species of lacertid lizards. In addition, we test for a mechanical link between the organismal and muscular (power output, fatigue resistance) performance traits. We find weak evidence for a trade-off between burst and sustained locomotion at the whole-organism level; however, there is a significant trade-off between muscle power output and fatigue resistance in the isolated muscle level. Variation in whole-animal sprint speed can be convincingly explained by variation in muscular power output. The variation in locomotor stamina at the whole-organism level does not relate to the variation in muscle fatigue resistance, suggesting that whole-organism stamina depends not only on muscle contractile performance but probably also on the performance of the circulatory and respiratory systems. 相似文献