Study of Circular Dichroism Modes Through Decomposition of Planar Nanostructures

We extend the plasmon hybridization method from a single nanoparticle to a complex planar nanostructure, decomposing the complex nanostructure into fundamental nanoparticle building blocks. Using gammadion nanostructure as an example, we validated the theory by comparing the field profile in the gammadion’s arms under the influence of an incident circularly polarized wave. This allows us to address the origin of the plasmonics modes in the circular dichroism (CD) spectrum. The use of this hybridization method provides a simple and intuitive explanation on how conductive and inductive coupling may result from complex planar nanostructures, allowing us to study its optical properties. Using our approach, top down hybridization studies can be applied to other complex planar structures to gain further insight on the origin of the CD modes and enhance ultrasensitive sensing of chiral micro and macro molecules.     

A fine structure study of venom gland cells in globiferous pedicellariae from Stronglocentrotus purpuratus (Stimpson)

Cells in secretory glands of globiferous pedicellariae from Strongylocentrotus purpuratus (Stimpson) were studied with the electron microscope and subjected to preliminary light microscopic, histochemical analysis. Specimens for electron microscopic observation were fixed with chilled 2% glutaraldehyde in sea water postfixed in cold 1.33% osmic acid, and embedded in Araldite 502 epoxy resin Samples for histochemical analysis were fixed in the same manner, and then embedded in n-butylmethacrylate. Secretory cells line and fill partially bifurcated, muscular gland sacs located peripherally on each of three jaw elements comprising the pedicellarial head. Cells from venom glands are typically mucoid in appearance, possessing small volumes of basally displaced, vesiculated cytoplasm and an extensive system of vacuoles dominating the apical nine-tenths of each cell. These vacuoles enclose ground substances of various densities and staining affinities. Despite their extensive vacuolation, gland cells contain numerous cytomembrane complexes indicating metabolic activity just prior to fixation. Deciduous endoplasmic reticulum, Golgi complexes, large vacuoles, and various species of vesicles associated with these membrane systems are found in spatial proximity which indicates an apparent biosynthetic association. Preliminary histochemical tests on sections embedded in acrylic plastic indicate vacuolar products may consist of protein and nonsulfated acid mucosubstances. Gland cells are probably holocrine in function, releasing their vacuolar complement upon constriction of the muscular gland sac. There is no evidence indicating delivery of non-membrane bounded, granular secretion to an acellular lumen within the gland sac.     

DNA synthesis and induced mutations in the presence of 5-bromouracil II. Induction of mutations

Summary An investigation has been carried out on the heritable changes caused by the incorporation of 5-bromouracil (BU) into the DNA of a number of amino acid-requiring derivatives of a thymineless mutant ofEscherichia coli 15. Results revealed that the number of mutations induced by the analogue was linearly related to the amount of BU incorporated into DNA. DNA replication was necessary in the presence of BU for the induction of mutations, but concomitant RNA and protein synthesis were not necessary. Induced revertants were found to arise in either one of two distinct patterns: 1. in a single burst one replication after incorporation of BU, with no further increase upon subsequent DNA replication, and 2. continually with each additional DNA replication. Based on theFreese theory, these patterns allowed tentative identification of the base pairs involved. Further, the number of DNA replications necessary for the expression of BU induced reversions was determined. It was found that a transition from A:T to G:C required two DNA replications in addition to incorporation of BU, while the transition C:G to A:T required only one. Results obtained by the use of BU were compared with results obtained using AP. It was found that the pattern of mutant induction and the number of DNA replications necessary for the expression of each mutant were the same with AP as with BU. This implied that AP preferentially replaces adenine. As the number of DNA replications necessary for the expression of BU-and AP-induced reversions was the same for each mutant tested, it was concluded that both strands of the DNA molecule were necessary to carry the genetic message. An attempt was made to synchronize the replication of DNA and, thereby to synchronize the appearance of mutations during one replication cycle. Revertants, however, occurred uniformly throughout the cycle. The results were further discussed in relation to existing models of DNA replication.With 10 Figures in the TextSupported in part by grants from the American Cancer Society, the U.S. Public Health Service and the National Science Foundation administered by ProfessorF. J. Ryan.     

Incidence and transmission patterns of tuberculosis among indigenous populations in Brazil

Approximately 10% of the Brazilian indigenous population lives in the state of Mato Grosso do Sul (MS), where a large number of new cases of tuberculosis (TB) are reported. This study was conducted to assess TB occurrence, transmission and the utility of TB diagnosis based on the Ogawa-Kudoh (O-K) culture method in this remote population. The incidence of TB was estimated by a retrospective review of the surveillance data maintained by the Notifiable Diseases Surveillance System for the study region. The TB transmission pattern among indigenous people was assessed by genotyping Mycobacterium tuberculosis isolates using the IS 6110 restriction fragment length polymorphism (RFLP) technique. Of the 3,093 cases identified from 1999-2001, 610 (~20%) were indigenous patients (average incidence: 377/100,000/year). The use of the O-K culture method increased the number of diagnosed cases by 34.1%. Of the genotyped isolates from 52 indigenous patients, 33 (63.5%) belonged to cluster RFLP patterns, indicating recently transmitted TB. These results demonstrate high, on-going TB transmission rates among the indigenous people of MS and indicate that new efforts are needed to disrupt these current transmissions.     

Conserved Distal Loop Residues in the Hsp104 and ClpB Middle Domain Contact Nucleotide-binding Domain 2 and Enable Hsp70-dependent Protein Disaggregation

The homologous hexameric AAA⁺ proteins, Hsp104 from yeast and ClpB from bacteria, collaborate with Hsp70 to dissolve disordered protein aggregates but employ distinct mechanisms of intersubunit collaboration. How Hsp104 and ClpB coordinate polypeptide handover with Hsp70 is not understood. Here, we define conserved distal loop residues between middle domain (MD) helix 1 and 2 that are unexpectedly critical for Hsp104 and ClpB collaboration with Hsp70. Surprisingly, the Hsp104 and ClpB MD distal loop does not contact Hsp70 but makes intrasubunit contacts with nucleotide-binding domain 2 (NBD2). Thus, the MD does not invariably project out into solution as in one structural model of Hsp104 and ClpB hexamers. These intrasubunit contacts as well as those between MD helix 2 and NBD1 are different in Hsp104 and ClpB. NBD2-MD contacts dampen disaggregase activity and must separate for protein disaggregation. We demonstrate that ClpB requires DnaK more stringently than Hsp104 requires Hsp70 for protein disaggregation. Thus, we reveal key differences in how Hsp104 and ClpB coordinate polypeptide handover with Hsp70, which likely reflects differential tuning for yeast and bacterial proteostasis.     

Structural and functional analysis of Vitamin K2 synthesis protein MenD

Here we describe in detail the crystal structures of the Vitamin K₂ synthesis protein MenD, from Escherichia coli, in complex with thiamine diphosphate (ThDP) and oxoglutarate, and the effects of cofactor and substrate on its structural stability. This is the first reported structure of MenD in complex with oxoglutarate. The residues Gly472 to Phe488 of the active site region are either disordered, or in an open conformation in the MenD oxoglutarate complex structure, but adopt a closed conformation in the MenD ThDP complex structure. Biospecific-interaction analysis using surface plasmon resonance (SPR) technology reveals an affinity for ThDP and oxoglutarate in the nanomolar range. Biochemical and structural analysis confirmed that MenD is highly dependent on ThDP for its structural stability. Our structural results combined with the biochemical assay reveal novel features of the enzyme that could be utilized in a program of rational structure-based drug design, as well as in helping to enhance our knowledge of the menaquinone synthesis pathway in greater detail.     

Integrating human stem cell expansion and neuronal differentiation in bioreactors

Background  

Human stem cells are cellular resources with outstanding potential for cell therapy. However, for the fulfillment of this application, major challenges remain to be met. Of paramount importance is the development of robust systems for in vitro stem cell expansion and differentiation. In this work, we successfully developed an efficient scalable bioprocess for the fast production of human neurons.     

Identification of farnesoid X receptor modulators by a fluorescence polarization-based interaction assay

Farnesoid X receptor (FXR) serves as a receptor for chenodeoxycholic acid (CDCA) and other bile acids, and it coordinates cholesterol and lipid metabolism. Because targeting the FXR-CDCA interaction might provide a way to regulate lipid homeostasis, we developed an FXR binding assay based on fluorescence polarization. Employing a fluorescently labeled CDCA (CDCA-F), we showed that CDCA-F selectively bound to the ligand binding domain of FXR (FXR-LBD) among nuclear receptors. The assay was then used for screening inhibitors against the FXR-CDCA interaction, thereby discovering four relatively potent inhibitors. The selected inhibitors were further studied for changes in intrinsic tryptophan fluorescence of FXR-LBD to gain structural insights into the interaction. Furthermore, transactivation effects of the inhibitors on the human bile salt excretory pump (BSEP) promoter were examined to reveal their cellular activities in the FXR-mediated pathway. Therefore, we demonstrated that the developed assay would offer an efficient primary screening tool for identifying FXR modulators.