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991.
The origin and early diversification of decapod crustaceans and their expansion from marine to continental environments are key events in arthropod evolution. Rare fossil decapods are known from the Palaeozoic, and the earliest eumalacostracans with undoubted decapod affinities are the Late Devonian Palaeopalaemon and Aciculopoda, found in offshore marine deposits. Here, we describe a new species of the shrimp Tealliocaris found in floodplain and temporary pond deposits from the Famennian (Late Devonian) of Belgium, together with a rare Palaeozoic assemblage of other crustaceans (conchostracans, notostracans and anostracans) and chelicerates (eurypterids). Tealliocaris walloniensis sp. nov. documents the earliest occurrence of continental decapod crustaceans and indicates that decapods have been part of continental ecosystems at least since the Late Devonian. 相似文献
992.
Background
Classification of species within the genus Salmo is still a matter of discussion due to their high level of diversity and to the low power of resolution of mitochondrial (mt)DNA-based phylogeny analyses that have been traditionally used in evolutionary studies of the genus. We apply a new marker system based on nuclear (n)DNA loci to present a novel view of the phylogeny of Salmo representatives and we compare it with the mtDNA-based phylogeny.Methods
Twenty-two nDNA loci were sequenced for 76 individuals of the brown trout complex: Salmo trutta (Danubian, Atlantic, Adriatic, Mediterranean and Duero mtDNA lineages), Salmo marmoratus (marble trout), Salmo obtusirostris (softmouth trout), and Salmo ohridanus (Ohrid belvica or belushka). Sequences were phylogenetically analyzed using maximum-likelihood and Bayesian Inference methods. The divergence time of the major clades was estimated using the program BEAST.Results
The existence of five genetic units i.e. S. salar, S. ohridanus, S. obtusirostris, S. marmoratus and the S. trutta complex, including its major phylogenetic lineages was confirmed. Contrary to previous observations, S. obtusirostris was found to be sister to the S. trutta complex and the S. marmoratus clade rather than to the S. ohridanus clade. Reticulate evolution of S. obtusirostris was confirmed and a time for its pre-glacial origin suggested. S. marmoratus was found to be a separate species as S. trutta and S. obtusirostris. Relationships among lineages within the S. trutta complex were weakly supported and remain largely unresolved.Conclusions
Nuclear DNA-based results showed a fairly good match with the phylogeny of Salmo inferred from mtDNA analyses. The comparison of nDNA and mtDNA data revealed at least four cases of mitochondrial–nuclear DNA discordance observed that were all confined to the Adriatic basin of the Western Balkans. Together with the well-known extensive morphological and genetic variability of Balkan trouts, this observation highlights an interesting and variegated evolutionary history of Salmo in this area. 相似文献993.
Adrien Candat Ga?l Paszkiewicz Martine Neveu Romain Gautier David C. Logan Marie-Hélène Avelange-Macherel David Macherel 《The Plant cell》2014,26(7):3148-3166
Late embryogenesis abundant (LEA) proteins are hydrophilic, mostly intrinsically
disordered proteins, which play major roles in desiccation tolerance. In
Arabidopsis thaliana, 51 genes encoding LEA proteins clustered
into nine families have been inventoried. To increase our understanding of the yet
enigmatic functions of these gene families, we report the subcellular location of
each protein. Experimental data highlight the limits of in silico predictions for
analysis of subcellular localization. Thirty-six LEA proteins localized to the
cytosol, with most being able to diffuse into the nucleus. Three proteins were
exclusively localized in plastids or mitochondria, while two others were found dually
targeted to these organelles. Targeting cleavage sites could be determined for five
of these proteins. Three proteins were found to be endoplasmic reticulum (ER) residents, two were vacuolar, and two were
secreted. A single protein was identified in pexophagosomes. While most LEA protein
families have a unique subcellular localization, members of the LEA_4 family are
widely distributed (cytosol, mitochondria, plastid, ER, and pexophagosome) but share the presence of the class A
α-helix motif. They are thus expected to establish interactions with various
cellular membranes under stress conditions. The broad subcellular distribution of LEA
proteins highlights the requirement for each cellular compartment to be provided with
protective mechanisms to cope with desiccation or cold stress. 相似文献
994.
Nazia Perveen Sébastien Barot Gaël Alvarez Katja Klumpp Raphael Martin Alain Rapaport Damien Herfurth Frédérique Louault Sébastien Fontaine 《Global Change Biology》2014,20(4):1174-1190
Integration of the priming effect (PE) in ecosystem models is crucial to better predict the consequences of global change on ecosystem carbon (C) dynamics and its feedbacks on climate. Over the last decade, many attempts have been made to model PE in soil. However, PE has not yet been incorporated into any ecosystem models. Here, we build plant/soil models to explore how PE and microbial diversity influence soil/plant interactions and ecosystem C and nitrogen (N) dynamics in response to global change (elevated CO2 and atmospheric N depositions). Our results show that plant persistence, soil organic matter (SOM) accumulation, and low N leaching in undisturbed ecosystems relies on a fine adjustment of microbial N mineralization to plant N uptake. This adjustment can be modeled in the SYMPHONY model by considering the destruction of SOM through PE, and the interactions between two microbial functional groups: SOM decomposers and SOM builders. After estimation of parameters, SYMPHONY provided realistic predictions on forage production, soil C storage and N leaching for a permanent grassland. Consistent with recent observations, SYMPHONY predicted a CO2‐induced modification of soil microbial communities leading to an intensification of SOM mineralization and a decrease in the soil C stock. SYMPHONY also indicated that atmospheric N deposition may promote SOM accumulation via changes in the structure and metabolic activities of microbial communities. Collectively, these results suggest that the PE and functional role of microbial diversity may be incorporated in ecosystem models with a few additional parameters, improving accuracy of predictions. 相似文献
995.
996.
Irene Ga?án-Gómez Yue Wei Hui Yang Sherry Pierce Carlos Bueso-Ramos George Calin María del Carmen Boyano-Adánez Guillermo García-Manero 《PloS one》2014,9(4)
Myelodysplastic syndromes (MDS) are characterized by impaired proliferation and differentiation of hematopoietic stem cells. The participation of toll-like receptor (TLR)-mediated signaling in MDS is well documented. Increased TLR signaling leads to the constitutive activation of NF-κB, which mediates inflammation, cell proliferation and apoptosis. In addition, the TLR pathway induces the expression of miRNAs which participate in the fine-tuning of the inflammatory response. miRNAs also regulate other biological processes, including hematopoiesis. miR-125a and miR-125b are known modulators of hematopoiesis and are abnormally expressed in several hematologic malignancies. However, little is known about their role in MDS. NF-κB-activating ability has been described for both miRNAs. We studied the role of miR-125a/miR-125b in MDS and their relationship with TLR signaling and hematopoietic differentiation. Our results indicate that miR-125a is significantly overexpressed in MDS patients and correlates negatively with patient survival. Expression of miR-99b, which is clustered with miR-125a, is also directly correlated with prognosis of MDS. Both miR-125a and miR-99b activated NF-κB in vitro; however, we observed a negative correlation between miR-99b expression and the levels of TLR2, TLR7 and two downstream genes, suggesting that NF-κB activation by the miRNA cluster occurs in the absence of TLR signaling. We also show that TLR7 is negatively correlated with patient survival in MDS. In addition, our data suggest that miR-125a may act as an NF-κB inhibitor upon TLR stimulation. These results indicate that miR-125a is involved in the fine-tuning of NF-κB activity and that its effects may depend on the status of the TLR pathway. Furthermore, we observed that miR-125a inhibits erythroid differentiation in leukemia and MDS cell lines. Therefore, this miRNA could serve as a prognostic marker and a potential therapeutic target in MDS. 相似文献
997.
Adaptation in the retina is thought to optimize the encoding of natural light signals into sequences of spikes sent to the brain. While adaptive changes in retinal processing to the variations of the mean luminance level and second-order stimulus statistics have been documented before, no such measurements have been performed when higher-order moments of the light distribution change. We therefore measured the ganglion cell responses in the tiger salamander retina to controlled changes in the second (contrast), third (skew) and fourth (kurtosis) moments of the light intensity distribution of spatially uniform temporally independent stimuli. The skew and kurtosis of the stimuli were chosen to cover the range observed in natural scenes. We quantified adaptation in ganglion cells by studying linear-nonlinear models that capture well the retinal encoding properties across all stimuli. We found that the encoding properties of retinal ganglion cells change only marginally when higher-order statistics change, compared to the changes observed in response to the variation in contrast. By analyzing optimal coding in LN-type models, we showed that neurons can maintain a high information rate without large dynamic adaptation to changes in skew or kurtosis. This is because, for uncorrelated stimuli, spatio-temporal summation within the receptive field averages away non-gaussian aspects of the light intensity distribution. 相似文献
998.
999.
Anne Guimier Sandrine Ferrand Ga?lle Pierron Jér?me Couturier Isabelle Janoueix-Lerosey Valérie Combaret Véronique Mosseri Estelle Thebaud Marion Gambart Dominique Plantaz Aurélien Marabelle Carole Coze Xavier Rialland Sylvie Fasola Eve Lapouble Paul Fréneaux Michel Peuchmaur Jean Michon Olivier Delattre Gudrun Schleiermacher 《PloS one》2014,9(7)
Background
Somatically acquired genomic alterations with MYCN amplification (MNA) are key features of neuroblastoma (NB), the most common extra-cranial malignant tumour of childhood. Little is known about the frequency, clinical characteristics and outcome of NBs harbouring genomic amplification(s) distinct from MYCN.Methods
Genomic profiles of 1100 NBs from French centres studied by array-CGH were re-examined specifically to identify regional amplifications. Patients were included if amplifications distinct from the MYCN locus were seen. A subset of NBs treated at Institut Curie and harbouring MNA as determined by array-CGH without other amplification was also studied. Clinical and histology data were retrospectively collected.Results
In total, 56 patients were included and categorised into 3 groups. Group 1 (n = 8) presented regional amplification(s) without MNA. Locus 12q13-14 was a recurrent amplified region (4/8 cases). This group was heterogeneous in terms of INSS stages, primary localisations and histology, with atypical clinical features. Group 2 (n = 26) had MNA as well as other regional amplifications. These patients shared clinical features of those of a group of NBs MYCN amplified (Group 3, n = 22). Overall survival for group 1 was better than that of groups 2 and 3 (5 year OS: 87.5%±11% vs 34.9%±7%, log-rank p<0.05).Conclusion
NBs harbouring regional amplification(s) without MNA are rare and seem to show atypical features in clinical presentation and genomic profile. Further high resolution genetic explorations are justified in this heterogeneous group, especially when considering these alterations as predictive markers for targeted therapy. 相似文献1000.