Seed Germination Studies. III. Properties of a Cell-free Amino Acid Incorporating System From Pea Cotyledons; Possible Origin of Cotyledonary α-Amylase

Pea cotyledonary alpha-amylase increases dramatically both in specific activity and total activity between days 7 to 10 when germination occurs in the dark. This enzymatic activity does not seem to appear as a consequence of release or formation of an activator, removal of an inhibitor, dissociation of an inactive amylase complex, or proteolytic decomposition of a zymogen precursor. The possibility remains that the alpha-amylase is newly synthesized during germination. The preparation and properties of a cell-free protein-synthesizing system from germinating pea cotyledons is described; polyuridylic acid must be added for l-phenylalanine incorporation. Active microsomal preparations can be obtained from cotyledons germinated 10 days.     

Synthesis of prostaglandin by reproductive tissue of the male house cricket, acheta domesticus

Whole reproductive tracts of male house crickets, Acheta domesticus, incubated with arachidonic acid and glutathione yielded an average of 17 ug of prostaglandin (PG) E₂/g of tissue. Biosynthesized PGE₂ was identified by mass spectroscopy. A compound with thin layer and gas chromatographic properties identical to PGE₁ was isolated from spermatophores of house crickets. This appears to be the first report of the occurrence of a PG in an insect species. The possible role of PG in insect reproduction is discussed.     

Fine structural and cytochemical analysis of phragmosomes (microbodies) during cytokinesis inAllium root tip cells

Summary The ontogeny and distribution of phragmosomes (microbodies) during cytokinesis inAllium sativum root tip cells have been studied and complemented with a cytochemical analysis of reactivity with diaminobenzidine (DAB). Incubation in different DAB media revealed the presence of catalase but not peroxidase in these organelles, identifying them as a type of microbody associated with the forming cell plate. Only vacuoles, segments of endoplasmic reticulum and portions of the mature walls stained positively with DAB for peroxidase activity. Microbodies begin to appear in the region of the future cell plate as cells enter late anaphase. They exhibit a moderately electron-opaque anucleoid matrix and are continuous with segments of endoplasmic reticulum (ER). Certain observations have led us to consider that certain aspects of plate formation inAllium require the participation of microbodies: (a) their pronounced numerical increase at the onset of plate formation, (b) their intimate association with regions of the plate where vesicle fusion is in progress, and (c) their rapid numerical decline following vesicular fusion and concomitant cell plate formation. The characteristic spatial association observed between microbodies and the plate-forming vesicles may well reflect their mutual involvement in the metabolism of carbohydrates comprising the middle lamella, being coordinated by metabolic activities in the cytosol, mitochondria and dictyosomes.This study was supported in part by NIH training grant HD 174 to Dr.Hewson Swift and the Marquette University Committee on Research Grants 5641 and 5532.     

Effect of the Thiol-Oxidizing Agent Diamide on the Growth of Escherichia coli

Oxidation of glutathione within Escherichia coli cells by diamide, (CH(3))(2)NCON=NCON(CH(3))(2), stops growth but does not cause cell death. Normal growth rates are resumed after periods which vary in length according to the diamide concentration. Consumption of excess reagent with added glutathione quickly reverses the inhibition. Another thiol-oxidizing agent, azoester, C(6)H(5)N=NCOOCH(3), causes lysis.     

Identification of novel positive-strand RNA viruses by metagenomic analysis of archaea-dominated Yellowstone hot springs

There are no known RNA viruses that infect Archaea. Filling this gap in our knowledge of viruses will enhance our understanding of the relationships between RNA viruses from the three domains of cellular life and, in particular, could shed light on the origin of the enormous diversity of RNA viruses infecting eukaryotes. We describe here the identification of novel RNA viral genome segments from high-temperature acidic hot springs in Yellowstone National Park in the United States. These hot springs harbor low-complexity cellular communities dominated by several species of hyperthermophilic Archaea. A viral metagenomics approach was taken to assemble segments of these RNA virus genomes from viral populations isolated directly from hot spring samples. Analysis of these RNA metagenomes demonstrated unique gene content that is not generally related to known RNA viruses of Bacteria and Eukarya. However, genes for RNA-dependent RNA polymerase (RdRp), a hallmark of positive-strand RNA viruses, were identified in two contigs. One of these contigs is approximately 5,600 nucleotides in length and encodes a polyprotein that also contains a region homologous to the capsid protein of nodaviruses, tetraviruses, and birnaviruses. Phylogenetic analyses of the RdRps encoded in these contigs indicate that the putative archaeal viruses form a unique group that is distinct from the RdRps of RNA viruses of Eukarya and Bacteria. Collectively, our findings suggest the existence of novel positive-strand RNA viruses that probably replicate in hyperthermophilic archaeal hosts and are highly divergent from RNA viruses that infect eukaryotes and even more distant from known bacterial RNA viruses. These positive-strand RNA viruses might be direct ancestors of RNA viruses of eukaryotes.     

Nature and intensity of selection pressure on CRISPR-associated genes

The recently discovered CRISPR-Cas adaptive immune system is present in almost all archaea and many bacteria. It consists of cassettes of CRISPR repeats that incorporate spacers homologous to fragments of viral or plasmid genomes that are employed as guide RNAs in the immune response, along with numerous CRISPR-associated (cas) genes that encode proteins possessing diverse, only partially characterized activities required for the action of the system. Here, we investigate the evolution of the cas genes and show that they evolve under purifying selection that is typically much weaker than the median strength of purifying selection affecting genes in the respective genomes. The exceptions are the cas1 and cas2 genes that typically evolve at levels of purifying selection close to the genomic median. Thus, although these genes are implicated in the acquisition of spacers from alien genomes, they do not appear to be directly involved in an arms race between bacterial and archaeal hosts and infectious agents. These genes might possess functions distinct from and additional to their role in the CRISPR-Cas-mediated immune response. Taken together with evidence of the frequent horizontal transfer of cas genes reported previously and with the wide-spread microscale recombination within these genes detected in this work, these findings reveal the highly dynamic evolution of cas genes. This conclusion is in line with the involvement of CRISPR-Cas in antiviral immunity that is likely to entail a coevolutionary arms race with rapidly evolving viruses. However, we failed to detect evidence of strong positive selection in any of the cas genes.     

Effect of pH on the Electrophoretic Mobility of Spores of Bacillus anthracis and Its Surrogates in Aqueous Solutions

The electrophoretic mobility (EPM) of endospores of Bacillus anthracis and surrogates was measured in aqueous solution across a broad pH range and several ionic strengths. EPM values trended around phylogenetic clustering based on the 16S rRNA gene. Measurements reported here provide new insight for Bacillus anthracis surrogate selection and for attachment/detachment and transport studies.