Increased activation of blood neutrophils after cigarette smoking in young individuals susceptible to COPD

Background

Cigarette smoking is the most important risk factor for Chronic Obstructive Pulmonary Disease (COPD). Only a subgroup of smokers develops COPD and it is unclear why these individuals are more susceptible to the detrimental effects of cigarette smoking. The risk to develop COPD is known to be higher in individuals with familial aggregation of COPD. This study aimed to investigate if acute systemic and local immune responses to cigarette smoke differentiate between individuals susceptible or non-susceptible to develop COPD, both at young (18-40 years) and old (40-75 years) age.

Methods

All participants smoked three cigarettes in one hour. Changes in inflammatory markers in peripheral blood (at 0 and 3 hours) and in bronchial biopsies (at 0 and 24 hours) were investigated. Acute effects of smoking were analyzed within and between susceptible and non-susceptible individuals, and by multiple regression analysis.

Results

Young susceptible individuals showed significantly higher increases in the expression of FcγRII (CD32) in its active forms (A17 and A27) on neutrophils after smoking (p = 0.016 and 0.028 respectively), independently of age, smoking status and expression of the respective markers at baseline. Smoking had no significant effect on mediators in blood or inflammatory cell counts in bronchial biopsies. In the old group, acute effects of smoking were comparable between healthy controls and COPD patients.

Conclusions

We show for the first time that COPD susceptibility at young age associates with an increased systemic innate immune response to cigarette smoking. This suggests a role of systemic inflammation in the early induction phase of COPD.

Trial registration

Clinicaltrials.gov: {"type":"clinical-trial","attrs":{"text":"NCT00807469","term_id":"NCT00807469"}}NCT00807469

Electronic supplementary material

The online version of this article (doi:10.1186/s12931-014-0121-2) contains supplementary material, which is available to authorized users.     

Genetic dissection of Al tolerance QTLs in the maize genome by high density SNP scan

Background

Aluminum (Al) toxicity is an important limitation to food security in tropical and subtropical regions. High Al saturation on acid soils limits root development, reducing water and nutrient uptake. In addition to naturally occurring acid soils, agricultural practices may decrease soil pH, leading to yield losses due to Al toxicity. Elucidating the genetic and molecular mechanisms underlying maize Al tolerance is expected to accelerate the development of Al-tolerant cultivars.

Results

Five genomic regions were significantly associated with Al tolerance, using 54,455 SNP markers in a recombinant inbred line population derived from Cateto Al237. Candidate genes co-localized with Al tolerance QTLs were further investigated. Near-isogenic lines (NILs) developed for ZmMATE2 were as Al-sensitive as the recurrent line, indicating that this candidate gene was not responsible for the Al tolerance QTL on chromosome 5, qALT5. However, ZmNrat1, a maize homolog to OsNrat1, which encodes an Al³⁺ specific transporter previously implicated in rice Al tolerance, was mapped at ~40 Mbp from qALT5. We demonstrate for the first time that ZmNrat1 is preferentially expressed in maize root tips and is up-regulated by Al, similarly to OsNrat1 in rice, suggesting a role of this gene in maize Al tolerance. The strongest-effect QTL was mapped on chromosome 6 (qALT6), within a 0.5 Mbp region where three copies of the Al tolerance gene, ZmMATE1, were found in tandem configuration. qALT6 was shown to increase Al tolerance in maize; the qALT6-NILs carrying three copies of ZmMATE1 exhibited a two-fold increase in Al tolerance, and higher expression of ZmMATE1 compared to the Al sensitive recurrent parent. Interestingly, a new source of Al tolerance via ZmMATE1 was identified in a Brazilian elite line that showed high expression of ZmMATE1 but carries a single copy of ZmMATE1.

Conclusions

High ZmMATE1 expression, controlled either by three copies of the target gene or by an unknown molecular mechanism, is responsible for Al tolerance mediated by qALT6. As Al tolerant alleles at qALT6 are rare in maize, marker-assisted introgression of this QTL is an important strategy to improve maize adaptation to acid soils worldwide.

Electronic supplementary material

The online version of this article (doi:10.1186/1471-2164-15-153) contains supplementary material, which is available to authorized users.     

A genetic variant in osteoprotegerin is associated with progression of joint destruction in rheumatoid arthritis

Introduction

Progression of joint destruction in rheumatoid arthritis (RA) is partly heritably; 45 to 58% of the variance in joint destruction is estimated to be explained by genetic factors. The binding of RANKL (Receptor Activator for Nuclear Factor κ B Ligand) to RANK results in the activation of TRAF6 (tumor necrosis factor (TNF) receptor associated factor-6), and osteoclast formation ultimately leading to enhanced bone resorption. This bone resorption is inhibited by osteoprotegerin (OPG) which prevents RANKL-RANK interactions. The OPG/RANK/RANKL/TRAF6 pathway plays an important role in bone remodeling. Therefore, we investigated whether genetic variants in OPG, RANK, RANKL and TRAF6 are associated with the rate of joint destruction in RA.

Methods

1,418 patients with 4,885 X-rays of hands and feet derived from four independent data-sets were studied. In each data-set the relative increase of the progression rate per year in the presence of a genotype was assessed. First, explorative analyses were performed on 600 RA-patients from Leiden. 109 SNPs, tagging OPG, RANK, RANKL and TRAF6, were tested. Single nucleotide polymorphisms (SNPs) significantly associated in phase-1 were genotyped in data-sets from Groningen (Netherlands), Sheffield (United Kingdom) and Lund (Switzerland). Data were summarized in an inverse weighted variance meta-analysis. Bonferonni correction for multiple testing was applied.

Results

We found that 33 SNPs were significantly associated with the rate of joint destruction in phase-1. In phase-2, six SNPs in OPG and four SNPs in RANK were associated with progression of joint destruction with P-value <0.05. In the meta-analyses of all four data-sets, RA-patients with the minor allele of OPG-rs1485305 expressed higher rates of joint destruction compared to patients without these risk variants (P = 2.35x10⁻⁴). This variant was also significant after Bonferroni correction.

Conclusions

These results indicate that a genetic variant in OPG is associated with a more severe rate of joint destruction in RA.     

Constraints and trade-offs in Mediterranean plant communities: The case of holm oak-Aleppo pine forests

In this paper we review those aspects that are relevant to the development of a mechanistic ecological theory to account for the structure and dynamics of Mediterranean forests, focusing our attention on mixed forests of holm oak (Quercus ilex L.), a shade-tolerant, slowgrowing species that resprouts vigorously after disturbance, and Aleppo pine (Pinus halepensis M.), a fast-growing, nonresprouting, shade-intolerant species. The main objectives of this report are: to introduce some of the primary features of these forests, showing their structural complexity and historical peculiarities; to show that much of this complexity can be conceptually reduced to two main factors of variation, soil-moisture gradients and a complex interaction of historical management and disturbance regimes; and to contrast the unique features of Mediterranean systems with other communities that have inspired generalization in ecology. Plants in Mediterranean-climate regions must face several environmental constraints during their life cycle: water limitation, competition for light, and a complex set of disturbance regimes, mainly fire, herbivory, and human exploitation. The response of co-occurring species to a given set of environmental constraints depends on a combination of physiological and morphological traits. In holm oak-Aleppo pine forests, the lower limit of distribution along a soil-moisture gradient appears to be controlled by dry-season water stress on seedling performance, and the upper limit seems to be controlled by shade tolerance relative to competitors. The processes that generate and maintain these patterns are related to the responses of the two species to the water and light environments that result from interacting gradients of disturbance and resource availability. The dynamics of mixed holm oak-Aleppo pine forests may be represented along two major environmental axes: water availability and light intensity; namely, time since last disturbance. At the regional scale, the presence of holm oak and Aleppo pine is expected to be driven mainly by the precipitation regime, with the proportion of Aleppo pine increasing toward the driest border and with holm oak being the dominant species in areas with higher precipitation. Changes of dominance of holm oak and Aleppo pine also respond to water availability at the local scale. In this case, variations between species depend on different factors in a complex way, because reduced soil-moisture levels may result either from low precipitation or from topography and edaphic features. The dynamics of holm oak-Aleppo pine forests are also determined by temporal changes in canopy closure; that is, forest recovery after disturbance. In this case, the proportion of Aleppo pine would increase in recently disturbed stands (i.e., with high light intensity reaching the forest floor), whereas regeneration of holm oak would be dominant under partially closed canopies. Theories of forest dynamics developed in humid regions may apply only poorly to Mediterranean plant communities, where vegetation change is qualitatively or quantitatively different. Thus, succession in temperate forests appears to be driven by differences in light availability and shade tolerance; but in Mediterranean plant communities, water limitation is of greater importance for the distribution of forest species. In Mediterranean landscapes the interaction of life-history strategies with changing environments is difficult to infer from observational and experimental studies. A mechanistic approach, in which competition or plant performance is measured as a function of resource availability, seems more feasible. The idea should be to develop multispecies models calibrated specifically for Mediterranean forests in a combined program of modeling, field research, and experimentation.

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Resumen  En este trabajo se revisan los aspectos más relevantes en el desarrollo de una teoría ecológica mecanicista sobre la estructura y dinámica de los bosques mediterráneos, en concreto sobre los bosques mixtos de encina (Quercus ilex L.), una especie tolerante a la sombra, de crecimiento lento, y que rebrota vigorosamente después de una perturbación, y pino carrasco (Pinus halepensis M.), una especie de crecimiento rápido, no rebrotadora, e intolerante a la sombra. Los principales objetivos de este estudio son: introducir algunas de las principales características de estos bosques, mostrando su complejidad estructural y sus peculiaridades históricas; mostrar que gran parte de esta complejidad puede reducirse conceptualmente a dos principales factores de variación, la disponibilidad de agua en el suelo y una compleja interaction de regímenes de gestión y perturbación; y contrastar las características únicas de los sistemas mediterráneos con las de otros sistemas en los que se han basados gran parte de las generalizaciones que se han hecho en ecologia. En las regiones de clima mediterráneo, las plantas deben enfrentarse a diferentes restricciones: limitación hídrica, competencia por la luz, y un conjunto complejo de regímenes de perturbación, principalmente fuego, herbivoría, y explotación humana. La respuesta de las especies a un conjunto de limitaciones ambientales depende de la combinación de caracteres fisiológicos y morfológicos. En los bosques de pino carrasco y encina, el límite inferior de distribución de las especies viene controlado por el estrés hídrico de la estación, mientras que el límite superior viene controlado por la tolerancia a la sombra. Los procesos que generan y mantienen estos patrones están relacionados con las respuestas de ambas especies a lo largo de su ciclo de vida a los ambientes de luz y agua que se generan como resultado de la interacción de los gradientes de perturbación y disponibilidad de recursos. La dinámica de los bosques mixtos de pino carrasco y encina se puede representar a lo largo de dos principales ejes ambientales: disponibilidad de agua e intensidad de luz; o, lo que es lo mismo, tiempo desde la última perturbación. A una escala regional, la presencia de pino carrasco y encina viene determinada por el régimen de precipitación: el pino carrasco aumenta hacia el extremo más seco, mientras que la encina se hace dominante en áreas con mayor precipitación. A escala local, los cambios en la dominancia de ambas especies también responden a la disponibilidad de agua. En este caso las variaciones entre especies dependen de diferentes factores, ya que los niveles bajos de humedad del suelo pueden ser debidos a la baja precipitación, pero también a la topografía o a las características edáficas. La dinámica de los bosques de pino y encina también depende de los cambios temporales en el cierre de la cubierta, es decir, de la recuperación del bosque después de la perturbación. En este caso, la proporción de pino carrasco se incrementa en los rodales recién perturbados (en los cuales llega mucha luz al suelo del bosque), mientras que la regeneración de encina domina bajo cubiertas parcialmente cerradas. Las teorías de dinámica forestal desarrolladas en las regiones húmedas se aplican con dificultad en las comunidades de plantas mediterráneas, donde los cambios de la vegetación suelen ser cualitativamente y cuantitativamente distintos. Así, en los bosques templados la sucesión viene determinada por diferencias en la disponibilidad de luz y la tolerancia a la sombra de las diferentes especies, mientras que en las comunidades mediterráneas la limitación hídrica es más importante a la hora de explicar la distribución de las especies forestales. En los ecosistemas mediterráneos, la interacción de las estrategias del ciclo vital con los cambios en el ambiente dificilmente pueden deducirse a partir de estudios observacionales y experimentales. Se requiere una aproximación mecanicista, en la cual la competencia o el éxito de las plantas se pueda medir en función de la disponibilidad de recursos. La idea sería desarrollar modelos multiespecíficos calibrados específicamente para los bosques mediterráneos, en los que se combinara la modelización con los estudios de campo y la experimentación.

     

Sensitive fluorescence in situ hybridization signal detection in maize using directly labeled probes produced by high concentration DNA polymerase nick translation

The signal produced by fluorescence in situ hybridization (FISH) often is inconsistent among cells and sensitivity is low. Small DNA targets on the chromatin are difficult to detect. We report here an improved nick translation procedure for Texas red and Alexa Fluor 488 direct labeling of FISH probes. Brighter probes can be obtained by adding excess DNA polymerase I. Using such probes, a 30 kb yeast transgene, and the rp1, rp3 and zein multigene clusters were clearly detected.     

18S rRNA data indicate that Aschelminthes are polyphyletic in origin and consist of at least three distinct clades

The Aschelminthes is a collection of at least eight animal phyla, historically grouped together because the absence of a true body cavity was perceived as a pseudocoelom. Analyses of 18S rRNA sequences from six Aschelminth phyla (including four previously unpublished sequences) support polyphyly for the Aschelminthes. At least three distinct groups of Aschelminthes were detected: the Priapulida among the protostomes, the Rotifera-Acanthocephala as a sister group to the protostomes, and the Nematoda as a basal group to the triploblastic Eumetazoa.