Interaction of the membrane-inserted diphtheria toxin T domain with peptides and its possible implications for chaperone-like T domain behavior

The T domain of diphtheria toxin is believed to aid the low-pH-triggered translocation of the partly unfolded A chain (C domain) through cell membranes. Recent experiments have suggested the possibility that the T domain aids translocation by acting as a membrane-inserted chaperone [Ren, J., et al. (1999) Science 284, 955-957]. One prediction of this model is that the membrane-inserted T domain should be able to interact with sequences that mimic unfolded proteins. To understand the basis of interaction of the membrane-inserted T domain with unfolded polypeptides, its interaction with water-soluble peptides having different sequences was studied. The membrane-inserted T domain was able to recognize helix-forming 23-residue Ala-rich peptides. In the presence of such peptides, hydrophobic helix 9 of the T domain underwent the previously characterized conformational change from a state exhibiting shallow membrane insertion to one exhibiting deep insertion. This conformational change was more readily induced by the more hydrophobic peptides that were tested. It did not occur at all in the presence a hydrophilic peptide in which alternating Ser and Gly replaced Ala or in the presence of unfolded hydrophilic peptides derived from the A chain of the toxin. Interestingly, a peptide with a complex sequence (RKE(3)KE(2)LMEW(2)KM(2)SETLNF) also interacted with the T domain very strongly. We conclude that the membrane-inserted T domain cannot recognize every unfolded amino acid sequence. However, it does not exhibit strong sequence specificity, instead having the ability to recognize and interact with a variety of amino acid sequences having moderate hydrophobicity. This recognition was not strictly correlated with the strength of peptide binding to the lipid, suggesting that more than just hydrophobicity is involved. Although it does not prove that the T domain functions as a chaperone, T domain recognition of hydrophobic sequences is consistent with it having polypeptide recognition properties that are chaperone-like.     

Tropische Hochgebirge: Hotspots der Biodiversitätsentwicklung

Tropische Hochgebirge stellen für Pflanzen und Tiere einzigartige Habitate dar. Diese Regionen oberhalb von 3500 Meter Meereshöhe sind ungewöhnlich harten Umweltbedingungen unterworfen, die mit „summer every day and winter every night”︁ treffend gekennzeichnet werden können. Dazu kommen starkes Bodenfließen, hohe Lichtintensitäten, geringer Luftdruck (verminderte CO2‐ und O2‐ Konzentration), Trockenheit oder Nässe und immer wiederkehrende Brände. Die große Bandbreite an unterschiedlichsten Mikrostandorten führt zu einer Bildung von Ökorassen und Arten — Entwicklungen, die noch zusätzlich durch begrenzten Genaustausch als Folge der isolierten Lage gefördert werden. Hybridbildung ist ein weiterer Mechanismus, der die Entwicklung der Pflanzendiversität in den tropisch‐alpinen Regionen beschleunigt. Die scheinbare Monotonie der tropisch‐alpinen Vegetation im Hinblick auf die Wechselwirkungen von Biodiversität und Stabilität der Ökosysteme ist ebenfalls Thema des Artikels. Am Beispiel des Afrikanischen Bambus wird dargestellt, wie der regelmäßige Wechsel des in seiner Entwicklung synchronisierten Bambus mit einem gänzlich anderen, vom afrikanischen Holunder dominierten Vegetationstyp das Auftreten ökologischer Kalamitäten, wie beispielsweise Schädlingsplagen, verhindert. Temporäre Diversität durch einen regelmäßigen Wechsel verschiedener Vegetationstypen kann so eine geringe α‐Diversität kompensieren. Trotzdem sind tropisch‐alpine Ökosysteme in höchstem Maße anfällig für anthropogene Störungen. Touristische Aktivitäten verändern die Räuber‐Beute‐Beziehungen zugunsten der Herbivoren, deren Populationen enorm anwachsen und zu einer nachhaltigen Zerstörung der einzigartigen tropisch‐alpinen Vegetation führen.     

Critical role of the Fc receptor gamma-chain on APCs in the development of allergen-induced airway hyperresponsiveness and inflammation

The FcR common gamma-chain (FcRgamma) is an essential component of the receptors FcepsilonRI, FcgammaRI, and FcgammaRIII, which are expressed on many inflammatory cell types. The role of these receptors in the initiation or maintenance of allergic inflammation has not been well defined. FcRgamma-deficient (FcRgamma(-/-)) and control (wild-type (WT)) mice were sensitized and subsequently challenged with OVA. Following sensitization and challenge to OVA, FcRgamma-deficient (FcRgamma(-/-)) mice developed comparable levels of IgE and IgG1 as WT mice. However, numbers of eosinophils, levels of IL-5, IL-13, and eotaxin in bronchoalveolar lavage fluid, and mononuclear cell (MNC) proliferative responses to OVA were significantly reduced, as was airway hyperresponsiveness (AHR) to inhaled methacholine. Reconstitution of FcRgamma(-/-) mice with whole spleen MNC from WT mice before sensitization restored development of AHR and the numbers of eosinophils in bronchoalveolar lavage fluid; reconstitution after sensitization but before OVA challenge only partially restored these responses. These responses were also restored when FcRgamma(-/-) mice received T cell-depleted MNC, T and B cell-depleted MNC, or bone marrow-derived dendritic cells before sensitization from FcR(+/+) or FcgammaRIII-deficient but not FcRgamma(-/-) mice. The expression levels of FcgammaRIV on bone marrow-derived dendritic cells from FcR(+/+) mice were found to be low. These results demonstrate that expression of FcRgamma, most likely FcgammaRI, on APCs is important during the sensitization phase for the development of allergic airway inflammation and AHR.     

Inhibition of fungal ABC transporters by unnarmicin A and unnarmicin C, novel cyclic peptides from marine bacterium

Novel inhibitors of fungal ATP-binding cassette transporters were obtained by screening compounds and crude extracts from marine-derived fungi and bacteria using disk diffusion assays of Saccharomyces cerevisiae strains overexpressing a variety of fungal multi-drug efflux pumps. The cyclodepsipeptides unnarmicin A and unnarmicin C were able to sensitize cells overexpressing azole drug pumps ScPdr5p, CaCdr1p, CgCdr1p, and CgPdh1p to sub-MIC concentrations of fluconazole without affecting the growth of CaCdr2p and CaMdr1p overexpressing cells. Unnarmicin A and unnarmicin C were potent inhibitors of rhodamine 6G efflux of CaCdr1p expressing cells with IC₅₀ values of 3.61 and 5.65 μM, respectively. They inhibited the in vitro CaCdr1p ATPase activity at IC₅₀ values of 0.495 and 0.688 μM, respectively. And most importantly, they were able to sensitize azole-resistant Candida albicans clinical isolates to fluconazole. Unnarmicin A and unnarmicin C are candidate efflux pump inhibitors with the potential to be used as adjuvants for antifungal chemotherapy.     

Biodiversitätsforschung – wohin geht die Reise?

Biodiversity and biodiversity politics Extrapolations for a range of indicators suggest that based on current trends, pressures on biodiversity will continue to increase (Global Biodiversity Outlook 4, 2014). Since services of nature, like fertile soil, clear water and clean air are achieved by consortia of organisms rather than by individual species, they are already endangered. This holds, in spite of the fact, that only 10% of the earth's organisms are known to science and that therefore the loss caused by global change cannot be reliably quantified. Today, science develops new methods for recording consortia of coexisting organisms in a habitat. With the Convention on Biological Diversity, biodiversity has become a matter of politics which is welcome with respect to species and habitat conservation, but the concern of biopiracy creates bureaucratic hurdles hindering research. The most recent achievement is IPBES (Intergovernmental Platform on Biodiversity and Ecosystem Services, Bonn), which strives to bring more science into biodiversity politics.     

TGF-beta isoform signaling regulates secondary transition and mesenchymal-induced endocrine development in the embryonic mouse pancreas

Transforming growth factor-beta (TGF-beta) superfamily signaling has been implicated in many developmental processes, including pancreatic development. Previous studies are conflicting with regard to an exact role for TGF-beta signaling in various aspects of pancreatic organogenesis. Here we have investigated the role of TGF-beta isoform signaling in embryonic pancreas differentiation and lineage selection. The TGF-beta isoform receptors (RI, RII and ALK1) were localized mainly to both the pancreatic epithelium and mesenchyme at early stages of development, but then with increasing age localized to the pancreatic islets and ducts. To determine the specific role of TGF-beta isoforms, we functionally inactivated TGF-beta signaling at different points in the signaling cascade. Disruption of TGF-beta signaling at the receptor level using mice overexpressing the dominant-negative TGF-beta type II receptor showed an increase in endocrine precursors and proliferating endocrine cells, with an abnormal accumulation of endocrine cells around the developing ducts of mid-late stage embryonic pancreas. This pattern suggested that TGF-beta isoform signaling may suppress the origination of secondary transition endocrine cells from the ducts. Secondly, TGF-beta isoform ligand inhibition with neutralizing antibody in pancreatic organ culture also led to an increase in the number of endocrine-positive cells. Thirdly, hybrid mix-and-match in vitro recombinations of transgenic pancreatic mesenchyme and wild-type epithelium also led to increased endocrine cell differentiation, but with different patterns depending on the directionality of the epithelial-mesenchymal signaling. Together these results suggest that TGF-beta signaling is important for restraining the growth and differentiation of pancreatic epithelial cells, particularly away from the endocrine lineage. Inhibition of TGF-beta signaling in the embryonic period may thus allow pancreatic epithelial cells to progress towards the endocrine lineage unchecked, particularly as part of the secondary transition of pancreatic endocrine cell development. TGF-beta RII in the ducts and islets may normally serve to downregulate the production of beta cells from embryonic ducts.