Temporal competition between differentiation programs determines cell fate choice

Multipotent differentiation, where cells adopt one of several possible fates, occurs in diverse systems ranging from bacteria to mammals. This decision‐making process is driven by multiple differentiation programs that operate simultaneously in the cell. How these programs interact to govern cell fate choice is poorly understood. To investigate this issue, we simultaneously measured activities of the competing sporulation and competence programs in single Bacillus subtilis cells. This approach revealed that these competing differentiation programs progress independently without cross‐regulation before the decision point. Cells seem to arrive at a fate choice through differences in the relative timing between the two programs. To test this proposed dynamic mechanism, we altered the relative timing by engineering artificial cross‐regulation between the sporulation and competence circuits. Results suggest a simple model that does not require a checkpoint or intricate cross‐regulation before cellular decision‐making. Rather, cell fate choice appears to be the outcome of a ‘molecular race’ between differentiation programs that compete in time, providing a simple dynamic mechanism for decision‐making.     

ABC-X: a generalized,automatically configurable artificial bee colony framework

The artificial bee colony (ABC) algorithm is a popular metaheuristic that was originally conceived for tackling continuous function optimization tasks. Over the last decade, a large number of variants of ABC have been proposed, making it by now a well-studied swarm intelligence algorithm. Typically, in a paper on algorithmic variants of ABC algorithms, one or at most two of its algorithmic components are modified. Possible changes include variations on the search equations, the selection of candidate solutions to be explored, or the adoption of features from other algorithmic techniques. In this article, we propose to follow a different direction and to build a generalized ABC algorithm, which we call ABC-X. ABC-X collects algorithmic components available from known ABC algorithms into a common algorithm framework that allows not only to instantiate known ABC variants but, more importantly, also many ABC algorithm variants that have never been explored before in the literature. Automatic algorithm configuration techniques can generate from this template new ABC variants that perform better than known ABC algorithms, even when their numerical parameters are fine-tuned using the same automatic configuration process.     

In vitro Antioxidant and Cytotoxic Activities of Extracts of Endemic Tanacetum erzincanense Together with Phenolic Content by LC-ESI-QTOF-MS

In this study, phenolic composition, and in vitro biological activities of ethyl acetate (EAE) and methanol (ME) extracts obtained from the aerial parts of endemic Tanacetum erzincanense were investigated. Total phenolic and flavonoid content of the extracts were determined by Folin-Ciocalteu and aluminum chloride colorimetric methods, respectively. Antioxidant capacity of the extracts was evaluated over radical scavenging (DPPH and ABTS) and metal ion reducing power (FRAP and CUPRAC) tests. Individual phenolic compounds in ME was analyzed by high-performance liquid chromatography coupled to electrospray ionization quadrupole time-of-flight mass spectrometry (LC-ESI-QTOF/MS). Cell inhibitory potential of the extracts was tested against colorectal adenocarcinoma (HT-29), breast adenocarcinoma (MCF-7), and hepatocarcinoma (HepG2) cells by 2,3-bis(2-methoxy-4-nitro-5-sulfophenyl)-2H-tetrazolium-5-carboxanilide (XTT) assay. The results showed that ME contains higher TPC (64.4 mg GAE/g) and TFC (62.2 mg QE/g) than those of EAE (41.5 mg GAE/g and 40.0 mg QE/g). LC-ESI-QTOF/MS analysis revealed that ME is rich in phenolic compounds, namely, chlorogenic acid, apigenin, quercetin, luteolin, and diosmetin. Antioxidant assay results indicated that ME possess stronger activity than EAE and a power that competes with synthetic antioxidants. XTT assay results demonstrated that although both extracts displayed a considerable cytotoxicity against the tested cancer cell lines in a time and dose-dependent manner, ME expressed its selective inhibitory action towards MCF-7 cells with an IC₅₀ value of 20.4 μg/mL for 72 h. These results may serve as a basis for further in vivo studies to examine the potential applications of T. erzincanense in food and pharmaceutical industries.     

An ethnobotanical study in Central Anatolia (Turkey)

This study examines both edible plants and non-food uses of plants in a limited area to provide clues for archaeologists, to interpret their findings including the reconstruction of former diets. The results are based on an ethnoarchaeological study conducted in 1994-1995 on the traditional subsistence economy of a contemporary village, in close proximity to a pre-ceramic Neolithic site, A?ikli, in the Aksaray province of Central Anatolia. As a part of this study, about 600 plant specimens were collected, of which over 300 were considered useful by the villagers. Through this study the floral potential of a limited area, and the richness of the traditional knowledge of plants was documented to provide clues to archaeologists, archaeobotanists, botanists, pharmacologists, economists, and perhaps to the planners of future local development projects.     

Genetic diversity among Turkish local grape accessions (Vitis vinifera L.) using RAPD markers

To estimate genetic relationships among 46 local grape cultivars, RAPD analysis was performed with 25 decamer primers selected from a total of 60 primers. Genetic relationships among these cultivars were determined by calculating similarity indexes, from which a dendogram was derived. There was high genetic variation among the cultivars, with values of genetic diversity ranging from 0.553 to 0.952 using the Jaccard coefficient. UPGMA analysis of a distance matrix produced a dendogram with six clusters. The relatively high genetic similarity ratios observed for the cultivars was also reflected in the dendogram. In general, no relationship was encountered between the genetic similarity ratios of the cultivars and the results of previous ampelographic analyses.     

Treatment of dye (Remazol Blue) and heavy metals using yeast cells with the purpose of managing polluted textile wastewaters

The bioaccumulation of chromium(VI), nickel(II), copper(II), and reactive dye by the yeast Rhodotorula mucilaginosa has been investigated in media containing molasses as a carbon and energy source. Optimal pH values for the yeast cells to remove the pollutants were pH 4 for copper(II) and dye, pH 6 for chromium(VI) and dye, and pH 5 for nickel(II) and dye in media containing 50 mg l^?1 heavy metal and 50 mg l^?1 Remazol Blue. The maximum dye bioaccumulation was observed within 4–6 days and uptake yields varied from 93% to 97%. The highest copper(II) removal yields measured were 30.6% for 45.4 mg l^?1 and 32.4% for 95.9 mg l^?1 initial copper(II) concentrations. The nickel(II) removal yield was 45.5% for 22.3 mg l^?1, 38.0% for 34.7 mg l^?1, and 30.3% for 62.2 mg l^?1. Higher chromium(VI) removal yields were obtained, such as 94.5% for 49.2 mg l^?1 and 87.7% for 129.2 mg l^?1 initial chromium(VI) concentration. The maximum dye and heavy metal bioaccumulation yield was investigated in media with a constant dye (approximately 50 mg l^?1) and increasing heavy metal concentration. In the medium with 48.9–98.8 mg l^?1 copper(II) and constant dye concentration, the maximum copper(II) bioaccumulation was 27.7% and 27.9% whereas the maximum dye bioaccumulation was 96.1% and 95.3%. The maximum chromium(VI) bioaccumulation in the medium with dye was 95.2% and 80.3% at 48.2 and 102.2 mg l^?1 chromium(VI) concentrations. In these media dye bioaccumulation was 76.1% and 35.1%, respectively. The highest nickel(II) removal was 6.1%, 20.3% and 16.0% in the medium with 23.8 mg l^?1 nickel(II) + 37.8 mg l^?1 dye, 38.1 mg l^?1 nickel(II) + 33.4 mg l^?1 dye and 59.0 mg l^?1 nickel(II) + 39.2 mg l^?1 dye, respectively. The maximum dye bioaccumulation yield in the media with nickel(II) was 94.1%, 78.0% and 58.7%, respectively.     

Conversion of olive pomace oil to cocoa butter-like fat in a packed-bed enzyme reactor

Refined olive pomace oil (ROPO) was utilized as a source oil for production of cocoa butter-like fat. Immobilized sn-1,3 specific lipase catalyzed acidolysis of ROPO with palmitic (PA) and stearic (SA) acids was performed in a laboratory scale packed-bed reactor. Effect of reactor conditions on product formation was studied at various substrate mole ratios (ROPO:PA:SA; 1:1:1, 1:1:3, 1:3:3, 1:2:6), enzyme loads (10%, 20%, 40%), substrate flow rates (1.5, 4.5, 7.5, 15 ml/min) and solvent amounts (150, 400 ml). The highest yield (10.9% POP, 19.7% POS and 11.2% SOS) was obtained at 40% enzyme load, 1:2:6 substrate mole ratio, 45 degrees C, 7.5 ml/min substrate flow rate, 150 ml solvent and 3h reaction time. The melting profile and SFC of the product were comparable to those of CB. Polarized light microscope (PLM) images showed no drastic changes in polymorphic behavior between CB and product.