Altered gating properties of functional Cx26 mutants associated with recessive non-syndromic hearing loss

Connexins (Cx) form gap junctions that allow the exchange of small metabolites and ions. In the inner ear, Cx26 is the major gap junction protein and mutations in the Cx26-encoding gene, GJB2, are the most frequent cause of autosomal recessive non-syndromic hearing loss (DFNB1). We have functionally analyzed five Cx26 mutations associated with DFNB1, comprising the following single amino-acid substitutions: T8M, R143W, V153I, N206S and L214P. Coupling of cells expressing wild-type or mutant Cx26 was measured in the paired Xenopus oocyte assay. We found that the R143W, V153I and L214P mutations were unable to form functional channels. In contrast, the T8M and N206S mutants did electrically couple cells, though their voltage gating properties were different from wild-type Cx26 channels. The electrical coupling of oocytes expressing the T8M and N206S mutants suggest that these channels may retain high permeability to potassium ions. Therefore, deafness associated with Cx26 mutations may not only depend on reduced potassium re-circulation in the inner ear. Instead, abnormalities in the exchange of other metabolites through the cochlear gap junction network may also produce deafness.     

Effect of Turkish propolis extracts on proteome of prostate cancer cell line

Background

The epidermal growth factor receptor (EGFR) is usually overexpressed in nasopharyngeal carcinoma (NPC) and is associated with pathogenesis of NPC. However, the downstream signaling proteins of EGFR in NPC have not yet been completely understood at the system level. The aim of this study was identify novel downstream proteins of EGFR signaling pathway in NPC cells.

Results

We analyzed EGFR-regulated phosphoproteome in NPC CNE2 cells using 2D-DIGE and mass spectrometry analysis after phosphoprotein enrichment. As a result, 33 nonredundant phosphoproteins including five known EGFR-regulated proteins and twenty-eight novel EGFR-regulated proteins in CNE2 were identified, three differential phosphoproteins were selectively validated, and two differential phosphoproteins (GSTP1 and GRB2) were showed interacted with phospho-EGFR. Bioinformatics analysis showed that 32 of 33 identified proteins contain phosphorylation modification sites, and 17 identified proteins are signaling proteins. GSTP1, one of the EGFR-regulated proteins, associated with chemoresistance was analyzed. The results showed that GSTP1 could contribute to paclitaxel resistance in EGF-stimulated CNE2 cells. Furthermore, an EGFR signaling network based on the identified EGFR-regulated phosphoproteins were constructed using Pathway Studio 5.0 software, which includes canonical and novel EGFR-regulated proteins and implicates the possible biological roles for those proteins.

Conclusion

The data not only can extend our knowledge of canonical EGFR signaling, but also will be useful to understand the molecular mechanisms of EGFR in NPC pathogenesis and search therapeutic targets for NPC.     

Free fatty acid accumulation by mesophilic lactic acid bacteria in cold-stored milk

This study was aimed to determine the accumulation of free fatty acid by mesophilic lactic acid bacteria (Lactococcus lactis subsp. lactis 1471, Lactococcus lactis subsp. cremoris 1000 and Lactobacillus casei 111) in cold-stored milk. According to the results, all cold-stored milks had higher acid degree values than those of fresh milk. This phenomenon showed that a slight increase occurred in the accumulation of free fatty acids as a result of spontaneous lipolysis during cold storage. All lactic acid bacteria showed good performance in production of titratable acidity, which increased during fermentation of the milk (fresh and stored milks). Moreover, as the storage time was prolonged, more free fatty acid accumulation was obtained from the fermentation of the cold-stored milk by the investigated lactic acid bacteria. The control milk, which was without lactic acid bacteria, showed no change in the accumulation of free fatty acid during fermentation. From this result, it can be suggested that longer cold-storage time can induce higher free fatty acid accumulation in milk by lactic acid bacteria.     

Stopping power and CSDA range calculations for incident electrons and positrons in breast and brain tissues

The stopping power in some biological compounds for electrons and positrons was calculated over the energy range from 100 eV to 1 GeV. Total stopping power was obtained by summing the electronic (collisional) and radiative stopping power of the target materials and then employing the continuous slowing down approximation (CSDA) to calculate the path length of incident particles in the target. An effective charge approximation was used for the calculation of collisional stopping power, and an analytical expression for the radiation length was applied to obtain the radiative stopping power. Calculations of stopping power and CSDA range were based mostly on analytical expressions, to allow for an easy calculation of these parameters. The results were tabulated and compared with available data.     

Elevational variation in regional vegetation responses to late‐glacial climate changes in the Carpathians

Aim We used fossil records to explore patterns of change in vegetation composition, turnover and diversity along an elevational gradient during the late‐glacial to early Holocene, and to locate the elevations most sensitive to past climate changes. Location Romania. Methods Changes in the late‐glacial vegetation communities were inferred from seven published pollen records distributed within the main vegetation belts of the Romanian Carpathians, at elevations from 275 to 1840 m. Principal components analysis, detrended canonical correspondence analysis (DCCA) and rarefaction analysis were undertaken on these data. Results DCCA indicates that compositional change is strongest (SD 1.2, c. 70%) at the late‐glacial/Holocene transition (c. 11,500 cal. yr bp ), but significant shifts also occur at c. 14,700, c. 13,800 and c. 12,700 cal. yr bp (SD 0.4–0.8, 25–50%). Palynological turnover is greater for mid‐elevation records (730–1100 m) than at low and high elevations. Intervals of greater palynological richness occur between c. 13,800 and 12,500 cal. yr bp and after 11,500 cal. yr bp , and intervals of lower richness occur before c. 14,000 cal. yr bp and between c. 12,900 and 11,500 cal. yr bp . Main conclusions Variations in species composition during repeated climate changes of the late‐glacial suggest that community composition at a given time was not only a result of the environmental conditions of that period, but also the legacy of previous cumulative recruitment and extirpation events. Turnover estimates suggest that mid‐elevations have been the most sensitive to climate change during the late‐glacial and early Holocene. Palynological richness estimates show a less clear elevational pattern and no evidence for a greater sensitivity of this measure of biodiversity at high elevations to past climate change. However, results may have been affected by taxa with high pollen productivity and distance dispersability. Our finding concurs with other palaeoecological and local‐scale modelling studies in suggesting that small populations have survived in favourable microhabitats embedded within larger unsuitable areas during the late‐glacial, features not captured by broad‐scale model predictions.     

Nisin production in a chitin-including continuous fermentation system with Lactococcus lactis displaying a cell wall chitin-binding domain

The limiting factors in the continuous production of nisin are high amount of biomass loss and low dilution rate application. In this study, a chitin-including continuous nisin fermentation system (CICON-FER) was constructed for high volumetric nisin production using nisin producer L. lactis displaying cell wall chitin-binding domain (ChBD) together with chitin in the reactor. In this respect, the highest binding conditions of relevant L. lactis cells to chitin were determined. Then the chitin flakes carrying nisin-producing L. lactis cells were used within the CICON-FER system at different dilution rates (0.1–0.9 h^?1) and initial glucose concentrations (20–60 g l^?1). The results revealed that the pH 7 conditions and the use of 100 mM sodium phosphate buffer with 0.1 % Tween 20 and Triton X-100 significantly increased the binding capacity of ChBD displaying L. lactis cells to chitin. The constructed CICON-FER system maintained the presence of the ChBD surface displaying L. lactis cells in the reactor system until 0.9 h^?1 dilution rate that resulted in a considerably high level of volumetric nisin production and productivity (10,500 IU ml^?1 and 9,450 IU ml^?1 h^?1, respectively) with the combination of a 0.9-h^?1 dilution rate and a 40-g l^?1 initial glucose concentration. In conclusion, an innovative nisin fermentation system that yielded the highest nisin production thus far and that was feasible for industrial application was created.     

Life cycle and mating behavior of <Emphasis Type="Italic">Helicotylenchus multicinctus</Emphasis> (Nematoda: Hoplolaimidae) on excised <Emphasis Type="Italic">Musa cavendishii</Emphasis> roots

The life cycle and mating behavior of Helicotylenchus multicinctus (Nematoda: Hoplolaimidae) were observed in vitro on excised roots of Musa cavendishii in gnotobiotic culture. Eggs hatched into juveniles whose appearance and structure were similar to those of the adults. Juveniles grew in size and each juvenile stage was terminated by a molt. H. multicinctus had four juvenile stages. The first molt occurred outside the egg shortly after hatching. After the final molt the juveniles differentiated into adult males and females. Mating was required for reproduction. After mating, fertilized females began to lay eggs. The life cycle from second stage juvenile to second stage juvenile was completed in 39 days.     

The distribution of CTL epitopes in HIV-1 appears to be random, and similar to that of other proteomes

Background  

HIV-1 viruses are highly capable of mutating their proteins to escape the presentation of CTL epitopes in their current host. Upon transmission to another host, some escape mutations revert, but other remain stable in the virus sequence for at least several years. Depending on the rate of accumulation and reversion of escape mutations, HIV-1 could reach a high level of adaptation to the human population. Yusim et. al. hypothesized that the apparent clustering of CTL epitopes in the conserved regions of HIV-1 proteins could be an evolutionary signature left by large-scale adaptation of HIV-1 to its human/simian host.