Gibberellins and Growth Inhibitors in Spring Bleeding Sap, Roots and Branches of Juglans regia L.

The main gibberellin found in the spring bleeding sap of thewalnut tree was identified as GA₁₉ and quantified by gas chromatography-selectedion monitoring (817 pg/ml). The second minor gibberellin (12pg GA₃-equiv./ml) was chromatographically similar to GA₅₃. Bothgibberellins occur in their free forms and as neutral ester-likeconjugates. In the roots, these free gibberellins and an additionalgibberellin glucoside-like component were found in late winter. In the bleeding sap, branches and roots, abscisic acid was identifiedby gas chromatography and mass spectrometry. In the sap, itsamount was determined to be 34 ng/ml. ABA was not found in aconjugated form, but the branches contained a neutral ester-likeconjugate of 4'-dihydrophaseic acid, an ABA metabolite, whichafter hydrolysis was identified by combined gas chromatography-massspectrometry. (Received March 28, 1981; Accepted November 16, 1981)     

Factors Influencing Algae–Clay Aggregation

The dumping of bauxite tailings on a clear-water Amazonian lake caused a significant decrease in phytoplankton densities. The influence of these suspended clay particles on algal sinking, through algae–clay aggregation, was investigated under laboratory conditions, by measuring fluctuations in algal population densities over time, with different suspended clay concentrations. The population densities of the four algal species tested, Phormidium amoenum, Mougeotia sp., Staurodesmus convergens and Chlorella sp., were decreased by the algae–clay aggregation. The extent of this process was dependent on algal morphological characteristics such as size and shape, as well as on the concentration of suspended clay particles.     

Disentangling the Influence of Past Fires on Subsequent Fires in Mediterranean Landscapes

Ecosystems - Understanding the interplay between climate, fuel and fire is necessary for developing strategies that minimize the negative impacts of fire on people and ecosystems. Here, we aim to...     

Cloudgene: A graphical execution platform for MapReduce programs on private and public clouds

ABSTRACT: BACKGROUND: The MapReduce framework enables a scalable processing and analyzing of large datasets by distributing the computational load on connected computer nodes, referred to as a cluster. In Bioinformatics, MapReduce has already been adopted to various case scenarios such as mapping next generation sequencing data to a reference genome, finding SNPs from short read data or matching strings in genotype files. Nevertheless, tasks like installing and maintaining MapReduce on a cluster system, importing data into its distributed file system or executing MapReduce programs require advanced knowledge in computer science and could thus prevent scientists from usage of currently available and useful software solutions. RESULTS: Here we present Cloudgene, a freely available platform to improve the usability of MapReduce programs in Bioinformatics by providing a graphical user interface for the execution, the import and export of data and the reproducibility of workflows on in-house (private clouds) and rented clusters (public clouds). The aim of Cloudgene is to build a standardized graphical execution environment for currently available and future MapReduce programs, which can all be integrated by using its plug-in interface. Since Cloudgene can be executed on private clusters, sensitive datasets can be kept in house at all time and data transfer times are therefore minimized. CONCLUSIONS: Our results show that MapReduce programs can be integrated into Cloudgene with little effort and without adding any computational overhead to existing programs. This platform gives developers the opportunity to focus on the actual implementation task and provides scientists a platform with the aim to hide the complexity of MapReduce. In addition to MapReduce programs, Cloudgene can also be used to launch predefined systems (e.g. Cloud BioLinux, RStudio) in public clouds. Currently, five different bioinformatic programs using MapReduce and two systems are integrated and have been successfully deployed. Cloudgene is freely available at http://cloudgene.uibk.ac.at.     

Foregut morphology and ontogeny of the spider crab Maja brachydactyla (Brachyura,Majoidea, Majidae)

We describe the morphology of the foregut of the spider crab Maja brachydactyla Balss, 1922, from first larval stage to adult, with detailed stage‐specific documentation using light and scanning electron microscopy. A total of 40 ossicles have been identified in the foregut of adults of M. brachydactyla using Alizarin‐Red staining. The morphological pattern of the ossicles and gastric mill is very similar to other Majoidea species with only a few variations. The foregut of the zoeae stages appeared as a small and simple cavity, with a cardio‐pyloric valve that separates the stomach into cardiac and pyloric regions. The pyloric filter is present from the first zoea, in contrast to the brachyuran species which have an extended larval development. Calcified structures have been identified in the cardio‐pyloric valve and pyloric region of the zoeal stages. The most significant changes in foregut morphology take place after the metamorphosis from ZII to megalopa, including the occurrence of the gastric mill. In the megalopa stage, the foregut ossicles are recognizable by their organization and general morphology, but are different from the adult phase in shape and number. Moreover, the gastric teeth show important differences: the cusps of the lateral teeth are sharp (no molariform); the dorsal tooth have a small, dentate cusp (not a well‐developed quadrangular cusp); and the accessory teeth are composed of one sharp peak (instead of four sharp peaks). The gastric mill ontogeny from megalopa to adult reveals intermediate morphologies during the earlier juvenile stages. The relationship between gastric mill structures with food preferences and their contribution to the brachyuran phylogeny are briefly discussed. J. Morphol. 276:1109–1122, 2015. © 2015 Wiley Periodicals, Inc.     

Karyotype Rearrangements in a Wine Yeast Strain by rad52-Dependent and rad52-Independent Mechanisms

Yeast strains isolated from the wild may undergo karyotype changes during vegetative growth, a characteristic that compromises their utility in genetic improvement projects for industrial purposes. Karyotype instability is a dominant trait, segregating among meiotic derivatives as if it depended upon only a few genetic elements. We show that disrupting the RAD52 gene in a hypervariable strain partially stabilizes its karyotype. Specifically, RAD52 disruption eliminated recombination at telomeric and subtelomeric sequences, had no influence on ribosomal DNA rearrangement rates, and reduced to 30% the rate of changes in chromosomal size. Thus, there are at least three mechanisms related to karyotype instability in wild yeast strains, two of them not requiring RAD52-mediated homologous recombination. When utilized for a standard sparkling-wine second fermentation, Δrad52 strains retained the enological properties of the parental strain, specifically its vigorous fermentation capability. These data increase our understanding of the mechanisms of karyotype instability in yeast strains isolated from the wild and illustrate the feasibility and limitations of genetic remediation to increase the suitability of natural strains for industrial processes.