Isolation of a Paenibacillus sp. strain and structural elucidation of its broad-spectrum lipopeptide antibiotic

This research was initiated to search for novel antimicrobial compounds produced by food or environmental microorganisms. A new bacterial strain, designated OSY-SE, which produces a unique and potent antimicrobial agent was isolated from soil. The isolate was identified as a Paenibacillus sp. through cultural, biochemical, and genetic analyses. An antimicrobial compound was extracted from Paenibacillus OSY-SE with acetonitrile and purified using liquid chromatography. After analyses by mass spectrometry (MS) and nuclear magnetic resonance (NMR), the antimicrobial compound was determined to be a cyclic lipopeptide consisting of a C(15) fatty acyl (FA) chain and 13 amino acids. The deduced sequence is FA-Orn-Val-Thr-Orn-Ser-Val-Lys-Ser-Ile-Pro-Val-Lys-Ile. The carboxyl-terminal Ile is connected to Thr by ester linkage. The new compound, designated paenibacterin, showed antagonistic activities against most Gram-positive and Gram-negative bacteria tested, including Listeria monocytogenes, methicillin-resistant Staphylococcus aureus, Escherichia coli O157:H7, and Salmonella enterica serovar Typhimurium. Paenibacterin is resistant to trypsin, lipase, α-glucosidase, and lysozyme. Its antimicrobial activity was lost after digestion by pronase and polymyxin acylase. Paenibacterin is readily soluble in water and fairly stable to exposure to heat and a wide range of pH values. The new isolate and its antimicrobial agent are being investigated for usefulness in food and medical applications.     

Draft Genome Sequence of Paenibacillus polymyxa OSY-DF, Which Coproduces a Lantibiotic, Paenibacillin, and Polymyxin E1

Paenibacillus polymyxa OSY-DF is a Gram-positive rod-shaped bacterium isolated from a fermented vegetable food. This bacterial strain displays potent antimicrobial activities against Gram-positive and Gram-negative pathogenic bacteria, attributed to the production of the lantibiotic paenibacillin and the colistin peptide polymyxin E1. Here we report the draft genome sequence of Paenibacillus polymyxa OSY-DF.     

Distinctive Mesorhizobium populations associated with Cicer arietinum L. in alkaline soils of Xinjiang, China

Background and aims

Rhizobia associated with chickpea in the main chickpea production zone of Xinjiang, China have never been investigated. Here, we present the first systematic investigation of these rhizobia’s genetic diversity and symbiotic interactions with their host plant.

Methods

Ninety-five isolates obtained from chickpea nodules in eight alkaline-saline (pH?8.24–8.45) sites in Xinjiang were characterized by nodulation test, symbiotic gene analysis, PCR-based restriction fragment length polymorphism (RFLP) of the 16S rRNA gene and 16S–23S rRNA intergenic spacer (IGS), BOX-PCR, phylogenies of 16S rRNA and housekeeping genes (atpD, recA and glnII), multilocus sequence analysis (MLSA) and DNA–DNA hybridization.

Results

All 95 isolates were identified within the genus of Mesorhizobium. Similarities less than 96.5% in MLSA and DNA–DNA hybridization values (<50%) between the new isolates and the defined Mesorhizobium species, and high similarities (>98%) of symbiotic genes (nodC and nifH) with those of the well studied chickpea microsymbioints Mesorhizobium ciceri and Mesorhizobium mediterraneum were found.

Conclusions

Chickpea rhizobia in alkaline-saline soils of Xinjiang, China, form a population distinct from the defined Mesorhizobium species. All these chickpea rhizobia in Xinjiang harbored symbiotic genes highly similar to the type strains of two well-studied chickpea rhizobia, M. ciceri and M. mediterraneum, evidencing the possible lateral transfer of symbiotic genes among these different rhizobial species. On the other hand, chickpea may strongly select rhizobia with a unique symbiotic gene background.     

直立百部遗传多样性的ISSR分析

利用ISSR分子标记,对直立百部4个居群的84个样本进行遗传多样性研究,探讨山东百部种的地位。结果表明:(1)15个引物共检测到184条清晰的谱带,其中多样性条带153条;直立百部的遗传多样性水平较高,其物种水平多样性条带百分率(PPF)为83.15%,有效等位基因数(Ae)为1.425,Shannon多样性指数(I)为0.388,Nei’s多样性指数(Hpop)为0.254。(2)居群平均水平上多样性条带百分率为63.04%,有效等位基因数为1.351,Shannon多样性指数为0.310,Nei’s多样性指数为0.206。(3)AMOVA分析显示直立百部居群间遗传分化水平(ΦST)为0.126 3,POPGENE分析显示居群间的遗传分化系数(GST)为0.191 1,二者均表明居群内变异大于居群间变异;直立百部居群间的基因流(Nm)为2.116 6,说明居群间的基因交流较频繁。(4)聚类及主成分分析显示,直立百部4个居群聚为两支,其中泰山居群与其他居群关系较远,以蔓生百部和大百部为外类群分析的结果支持将山东百部作为直立百部的异名,Mental检测显示居群间遗传距离与地理距离间没有显著相关性。     

Sex identification of owls (family Strigidae) using oligonucleotide microarrays

Molecular sexing of the diversified avian family Strigidae is difficult. Sex identification using the intron length difference between W and Z chromosomal CHD1 genes, as visualized by agarose gel electrophoreses, often produces ambiguous results. Here we describe a simple method for sexing a variety of Strigidae species using oligonucleotide microarrays, on which several sex-specific probes operated complementarily or in concert. The sex of 8 owl species was identified clearly on the microarrays through sequence recognition. This sequence-directed method can be easily applied to a wider range of Strigidae species.     

Monitoring sandy desertification of Otindag Sandy Land based on multi-date remote sensing images

Sandy desertification is now the main ecological problem in the Otindag Sandy Land. In order to reveal the process of land degradation, especially the latest situation of sandy desertification, a method integrating remote sensing, Geographic Information System (GIS) and field survey was employed to build a sandy desertification dataset for analysis. Remote sensing images included the Landsat Thematic Mapper (TM) image in 1987, the Enhanced Thematic Mapper Plus (ETM⁺) image in 2000, and the image with the Charge-Coupled Device Camera (CCD) on the China-Brazil Earth Resources Satellite (CBERS) in 2006. Five land-cover classes, including active sand dunes, fixed sand dunes, semi-fixed sand dunes, inter-dune grassland and wetlands, were identified. Results showed that the Otindag Sandy Land has been suffering sandy desertification since 1987 with 2 different desertified stages. The first stage from 1987 to 2000 was a severe sandy desertification period, characterized by the fixed sand dunes decreasing at a high speed, and the semi-fixed and active sand dunes increasing remarkably. The second stage spanned from 2000 to 2006 and the sandy desertification was weakened greatly. Although a large area of fixed sand dunes were transformed to other types, fixed sand dunes were still the dominant type in the Ointdag region at 2006. Spatial change detection based on active sand dunes showed that the expansion area was much larger than the reversion area in the past two decades, and that several active sand belts had been formed, suggesting that sandy desertification controlling of the Otindag Sandy Land will be a long-term task.     

CaMBP-10的cDNA克隆和表达及钙调素结合活性分析

采用RT PCR法 ,从中国大白菜中分离了编码CaMBP 1 0的cDNA克隆 .该cDNA全长 4 96bp ,编码 92个氨基酸 ,3′端含有 2 1 6bp的非编码区和poly A尾 .将此BP 1 0cDNA的成熟蛋白序列导入表达质粒pET1 5b并转化至大肠杆菌E .coliBL2 1 (DE3)condonplus RIL进行表达 .以免疫印迹和钙调素结合分析法对重组BP 1 0进行鉴定 ,证明其保持了与天然BP 1 0相同的钙调素结合活性 .氨基酸和核苷酸序列分析结果显示 ,它与植物转脂蛋白高度同源 ,特别是含有 8个保守半胱氨酸 .BP 1 0与转脂蛋白之间具极为相似的理化性质如分子量、等电点、热稳定性等 .据此认为 ,CaMBP 1 0是转脂蛋白家族的新成员 ,Ca2 + CaM信号系统可能参与植物转脂蛋白功能的调节     

笼养雌性果子狸同性数量对发情状态的影响及繁殖季节尿液雌激素浓度的变化

本研究试图揭示 (1)社会环境影响雌性果子狸 (Pagumalarvata)的交配日期 ,(2 )哺乳期母兽有雌二醇浓度升高的现象。通过检查是否排出交配栓并结合交配行为的发生与否确定开始交配的日期 ,使用放射免疫方法测定尿中雌二醇浓度。结果表明 (1)一雄两雌组中优势雌兽开始交配的日期显著早于劣势雌兽和单雌组雌兽 ,劣势雌兽和单雌组雌兽之间无差异 ;交配期优势雌兽尿液中雌二醇浓度明显高于劣势雌兽 ,而与单雌组中的雌兽无差异 ,但单雌组中雌兽尿液中雌二醇的浓度明显高于劣势雌兽雌二醇的浓度 ;(2 ) 5头母兽产后第二天雌二醇浓度开始上升 ,在第 5天时达到高峰 ,其中 4头母兽的雌二醇浓度共出现了两个峰值 ,其间隔为 16 75± 4 4 6 (4)天。上述结果说明 :(1)社会影响仅对优势雌性个体的繁殖有促进作用 ;(2 )哺乳期雌二醇水平的升高是季节性多次发情的基础。