A cylindrical thermistor probe for experiments on suppositories in rabbits

A cylindrical thermistor probe with a rubber disk stopper, which is beneficial for inserting a suppository into the rectum of rabbits without removal of the probe from the rectum, was developed. It is possible to measure body temperature continuously by using this probe in an experiment to assess the effects of a suppository on the body temperature of rabbits. After insertion of a suppository, leakage of the melted suppository from the rectum was not observed. No differences between this thermistor probe and an ordinary thermistor probe in the ability of the probe to detect the febrile response of rabbits injected with a bacterial pyrogen were observed. From these results, it could be concluded that this newly improved cylindrical thermistor probe is suitable for studying the effect of suppositories on the body temperature of rabbits.     

Thermistor probe for testing an antipyretic suppository in rabbits

The thermistor probe for estimating the effects of an antipyretic suppository after its administration into the rectum of the rabbit was studied. A thermistor probe with three rubber disk stoppers was confirmed to be able to prevent the leakage of drugs from the rectum of a rabbit restrained in a neck stock. By using this newly devised thermistor probe or the usual thermistor probe without a stopper, the febrile response was determined in rabbits injected with bacterial pyrogen. There was no difference in the ability to detect rectal temperature between the two thermistor probes. From these results, it could be concluded that this newly devised thermistor prove was useful in studying the effects of antipyretic suppositories in rabbits.     

Main arteries to the female reproductive organs in the helmeted guineafowl (Numida meleagris)

The helmeted guineafowl, Numida meleagris , is a member of the Galliformes (King & McLelland, 1975). This order includes the domestic fowl, Callus domeslicus , which has undoubtedly dominated research studies in poultry production generally. Many of the anatomical studies in birds have been carried out using the domestic fowl, with comparatively little mention of other genera. Although the genera in the Galliformes have very many similarities, few anatomical differences have been shown to exist. For example, Crowe & Crowe (1979) have found some striking differences between the blood supply to the head and neck of the guineafowl and the domestic fowl.
The guineafowl has become a popular poultry bird in Nigeria, and has been said to rank second to the domestic fowl, despite its seasonal breeding pattern. The further improvement of this genus in our poultry production has necessitated increased studies into its nutritional requirements, management procedures and disease prevalence. In line with this improvement is the need for anatomical data on the female reproductive organs as a basis for the breeding and selection programme. The aim of this study is to describe the macroscopic arterial blood supply to the reproductive organs of the guineafowl.     

Tracing geographical patterns of population differentiation in a widespread mangrove gastropod: genetic and geometric morphometrics surveys along the eastern African coast

In the present study, we assessed the inter‐ and intrapopulation genetic and morphological variation of Cerithidea decollata along the eastern coast of Africa. The population structure of C. decollata along the latitudinal gradient was examined by sequencing 420 bp of the mitochondrial cytochrome c oxidase I (COI) gene in 172 snails from 29 sites, in a combined analysis with geometric morphometrics in 1799 snails from 32 sites. Analysis of molecular variance and spatial analysis of molecular variance showed a moderate spatial population differentiation from Kenya to the Republic of South Africa, suggesting genetic divergence between the northern, central, and southern regions. This structure appears to be the result of life‐history traits combined with oceanographic features. Haplotype network and mismatch analysis suggest a recent population expansion during the Holsteinian interglacial period in the northern region and several colonization events in the central and southern regions. The morphometric approach suggests that morphological variation in shell shape is somewhat independent of the genetic divergence, revealing an overlap of shape across the latitudinal gradient but significant differences among‐population at a local level. This may indicate that similar ecological pressures are acting along the coast, leading to the occurrence of similar morphological characters. © 2012 The Linnean Society of London, Biological Journal of the Linnean Society, 2012, 107 , 647–663.     

Actin Isoform-specific Conformational Differences Observed with Hydrogen/Deuterium Exchange and Mass Spectrometry

Actin can exist in multiple conformations necessary for normal function. Actin isoforms, although highly conserved in sequence, exhibit different biochemical properties and cellular roles. We used amide proton hydrogen/deuterium (HD) exchange detected by mass spectrometry to analyze conformational differences between Saccharomyces cerevisiae and muscle actins in the G and F forms to gain insight into these differences. We also utilized HD exchange to study interdomain and allosteric communication in yeast-muscle hybrid actins to better understand the conformational dynamics of actin. Areas showing differences in HD exchange between G- and F-actins are areas of intermonomer contacts, consistent with the current filament models. Our results showed greater exchange for yeast G-actin compared with muscle actin in the barbed end pivot region and areas in subdomains 1 and 2 and for F-actin in monomer-monomer contact areas. These results suggest greater flexibility of the yeast actin monomer and filament compared with muscle actin. For hybrid G-actins, the muscle-like and yeastlike parts of the molecule generally showed exchange characteristics resembling their parent actins. A few exceptions were a peptide on top of subdomain 2 and the pivot region between subdomains 1 and 3 with muscle actin-like exchange characteristics although the areas were yeastlike. These results demonstrate that there is cross-talk between subdomains 1 and 2 and the large and small domains. Hybrid F-actin data showing greater exchange compared with both yeast and muscle actins are consistent with mismatched yeast-muscle interfaces resulting in decreased stability of the hybrid filament contacts.The ability of actin to engage in a wide range of physiological functions requires that it be subject to complex spatial and temporal control by a large array of actin-binding proteins (1–3). Such regulation demands that both the monomeric and filamentous forms of actin be able to exist in a number of different conformations. Some of these may be differentially recognized by different actin-binding proteins, and some might actually be induced by the interaction of actin with these proteins.Actin is highly conserved from yeast to humans. There is 87% sequence identity between yeast and muscle actin and 91% sequence identity between yeast and nonmuscle actins. Even with this high sequence similarity and minor differences in crystal structures, there are some major differences in yeast and muscle actin behavior. Yeast, compared with muscle actin, polymerizes faster and exchanges its bound nucleotide faster. In contrast to muscle actin, the yeast actin filament releases its P_i almost immediately after ATP hydrolysis and the filament fragments more readily (4). Yeast cells cannot survive with muscle actin as the sole actin, and with β-nonmuscle actin as the only actin, yeast cells are very sick (5). A set of biochemical data indicates that the muscle filament is less flexible than yeast (6, 7). However, conformational and structural differences that could explain these behavioral differences are unknown.The actin molecule is divided into two domains, the small domain consisting of subdomains 1 and 2 and the large domain consisting of subdomains 3 and 4. Modeling studies (8, 9) have suggested that each of the subdomains can move, and biochemical studies have suggested allosteric interactions between the subdomains. However, the nature of these interactions has not been elucidated on a molecular level.To try to gain insight into what parts of the actin molecule are important for the behavioral differences observed between yeast and muscle actin, yeast-muscle hybrid actins were constructed (10). Hybrid sub1 actin has muscle-specific residues introduced into the small domain of actin, making it muscle-like in subdomain 1 and yeastlike in subdomains 2, 3, and 4. Sub12 hybrid actin has muscle-specific residues in both subdomains 1 and 2, making it muscle-like in subdomains 1 and 2 and yeastlike in subdomains 3 and 4. These actins showed muscle-like behavior in several biochemical properties: nucleotide exchange rates, thermostability, and the nucleation phase during polymerization. Although most of the residues proposed to be involved in the interaction of actin with myosin are located in subdomains 1 and 2, both hybrids exhibited yeast actin behavior in the activation of myosin ATPase activity. The hybrid actins also exhibited higher critical concentrations than either yeast or muscle actin and formed ADP-F-actin that was less stable than either yeast or muscle actin (10).The experimental results with the hybrid actins indicated that the behavior of actin as a whole is dictated by the interaction and cross-talk of the two halves. One experimental approach to further understand the structural bases of 1) biochemical differences observed with yeast and muscle actins, 2) how introduction of muscle-specific residues affects conformational behavior of the hybrids, and 3) whether there is propagation of change and cross-talk from muscle domains into yeast domains of the hybrid actins in solution is to use NMR. However, NMR as a technique is not suitable here due to the high actin concentrations that would be needed and the propensity of actin to aggregate at these concentrations. Therefore, we utilized hydrogen-deuterium (HD)² exchange detected with mass spectrometry. This is a powerful technique that can be used to obtain information about conformational changes in proteins in solution on a global as well as a local level.A protein sample placed in a deuterated solution will exchange its amide protons of the polypeptide backbone with exchange times varying from seconds to months (11). The amount and rate of deuterium exchange will depend on factors like temperature, pD, accessible surface area, local environment, and conformational flexibility (12–15). Labeled protein samples are digested by pepsin, the protease of choice in HD experiments, because of the requirement for acidic pH in order to minimize back exchange. The resulting peptide fragments are separated by high pressure liquid chromatography and analyzed for deuterium uptake.For a peptide that is undergoing amide proton exchange, the average mass of the peptide will increase with labeling time with an increase in mass greater for the peptides that are more exposed to the solvent. The analysis of deuterium uptake for specific peptides and areas of proteins could potentially provide information about structural and conformational differences between different actin forms. Since changes in conformation among different actin states will affect deuterium uptake, HD exchange coupled with mass spectrometry should provide us with a tool to study the states of actin present in solution. HD exchange detected with mass spectrometry was previously used successfully by Chik and co-workers (16) to assess changes in muscle actin structure due to the G- to F-actin transition and the binding of phallodin to F-actin and of DNase I to G-actin. More recently, the technique has been used to assess conformational changes in the Arp2/3 complex, which contains actin like subunits (17). In this study, we used HD exchange detected with mass spectrometry to analyze differences in solution structures of yeast, muscle, sub1, and sub12 G- and F-actins.     

Antifungal activity in vitro of Baccharis glutinosa and Ambrosia confertiflora extracts on Aspergillus flavus, Aspergillus parasiticus and Fusarium verticillioides

The aims of this study were to evaluate the antifungal properties of Baccharis glutinosa and Ambrosia confertiflora extracts against Aspergillus flavus, A. parasiticus and Fusarium verticillioides, and to isolate the group of compounds that are responsible for the antifungal activity. Samples of aerial parts from each plant were extracted with 70% methanol and sequentially partitioned with hexane, ethyl acetate, and n-butanol. The partitioned fractions were evaluated in their capacity to inhibit the radial growth of the three species of fungi. The active fraction was used for an assay-guided chromatography of antifungal extracts. The results showed that the extract from B. glutinosa partitioned in ethyl acetate (Bea) showed the highest antifungal activity against the three fungi. Bea completely inhibited the growth of F. verticillioides at 0.8 mg/ml, whereas the radial growth of A. flavus and A. parasiticus was inhibited 70% at 1.5 mg/ml. The purified antifungal fraction from Bea showed 72, 54, and 52% of antifungal activity, respectively.     

Enhancement of phagocytic activity of macrophage-like cells by pyrogallol-type green tea polyphenols through caspase signaling pathways

We investigated the phagocytosis-enhancing activity of green tea polyphenols, such as epigallocatechin gallate (EGCG), epigallocatechin (EGC), epicatechin gallate (ECG), epicatechin (EC) catechin (+C) and strictinin, using VD3-differentiated HL60 cells. EGCG, EGC, ECG and strictinin, but not EC and +C, increased the phagocytic activity of macrophage-like cells, and a caspase inhibitor significantly inhibited phagocytic activities. These results suggest that the pyrogallol-type structure in green tea polyphenols may be important for enhancement of the phagocytic activity through caspase signaling pathways.     

Molecular phylogeny of centrohelid heliozoa,a novel lineage of bikont eukaryotes that arose by ciliary loss

Abstract Recent molecular and cellular evidence indicates that eukaryotes comprise three major lineages: the probably ancestrally uniciliate protozoan phylum Amoebozoa; the ancestrally posteriorly uniciliate opisthokont clade (animals, Choanozoa, and fungi); and a very diverse ancestrally biciliate clade, the bikonts—plants, chromalveolates, and excavate and rhizarian Protozoa. As Heliozoa are the only eukaryote phylum not yet placed on molecular sequence trees, we have sequenced the 18S rRNA genes of three centrohelid heliozoa, Raphidiophrys ambigua, Heterophrys marina, and Chlamydaster sterni, to investigate their phylogenetic position. Phylogenetic analysis by distance and maximum likelihood methods allowing for intersite rate variation and invariable sites confirms that centrohelid heliozoa are a robust clade that does not fall within any other phyla. In particular, they are decisively very distant from the heterokont pedinellid chromists, at one time thought to be related to heliozoa, and lack the unique heterokont signature sequence. They also appear not to be specifically related to either Amoebozoa or Radiolaria, with which they have sometimes been classified, so it is desirable to retain Heliozoa as a separate protozoan phylum. Even though centrohelids have no cilia or centrioles, the centrohelid clade branches among the bikont eukaryotes, but there is no strong bootstrap support for any particular position. Distance trees usually place centrohelids as sisters to haptophytes, whereas parsimony puts them as sisters to red algae, but there is no reason to think that either position is correct; both have very low bootstrap support. Quartet puzzling places them with fairly low support as sisters to the apusozoan zooflagellate Ancyromonas. As Ancyromonas is the only other eukaryote that shares the character combination of flat plate-like mitochondrial cristae and kinetocyst-type extrusomes with centrohelids, this position is biologically plausible, but because of weak support and conflict between trees it might not be correct. Irrespective of their precise position, our trees (together with previous evidence that Chlamydaster sterni has the derived dihydrofolate reductase/thymidylate synthetase gene fusion unique to bikonts) indicate that centrohelid heliozoa are ancestrally derived from a bikont flagellate by the loss of cilia. The centroplast that nucleates their axonemal microtubules is therefore almost certainly homologous with the centrosome of ciliated eukaryotes and should simply be called a centrosome.