Spatiotemporal modeling of first and second wave outbreak dynamics of COVID-19 in Germany

The COVID-19 pandemic has kept the world in suspense for the past year. In most federal countries such as Germany, locally varying conditions demand for state- or county-level decisions to adapt to the disease dynamics. However, this requires a deep understanding of the mesoscale outbreak dynamics between microscale agent models and macroscale global models. Here, we use a reparameterized SIQRD network model that accounts for local political decisions to predict the spatiotemporal evolution of the pandemic in Germany at county resolution. Our optimized model reproduces state-wise cumulative infections and deaths as reported by the Robert Koch Institute and predicts the development for individual counties at convincing accuracy during both waves in spring and fall of 2020. We demonstrate the dominating effect of local infection seeds and identify effective measures to attenuate the rapid spread. Our model has great potential to support decision makers on a state and community politics level to individually strategize their best way forward during the months to come.

     

Global secretome analysis of resident cardiac progenitor cells from wild-type and transgenic heart failure mice: Why ambience matters

Resident cardiac progenitor cells (CPCs) have gained attention in cardiac regenerative medicine primarily due to their paracrine activity. In our current study we determined the role of pathological conditions such as heart failure on the autocrine-paracrine action of stem cell antigen-1 (Sca-1) expressing CPC. This comparative secretome profiling of Sca-1⁺ cells derived from transgenic heart failure (αMHC–cyclin-T1/Gαq overexpression [Cyc] cells) versus healthy (wild-type [Wt] cells) mice, achieved via mass-spectrometric quantification, enabled the identification of over 700 proteins. Our results demonstrate that the heart failure milieu caused a 2-fold enrichment of extracellular matrix proteins (ECM) like biglycan, versican, collagen XII, and angiogenic factors like heparan sulfate proteoglycan 2, plasminogen activator inhibitor 1 in the secretome. We further elucidated the direct influence of the secretome on the functional behavior of Sca-1 ⁺ cells via in vitro tube forming assay. Secreted factors present in the diseased milieu induced tube formation in Cyc cells (1.7-fold; p < 0.01) when compared with Wt cells after 24 hr of exposure. The presence of conditioned media moderately increased the proliferation of Cyc cells but had a more pronounced effect on Wt cells. Overall, these findings revealed global modifications in the secretory activity of adult Sca-1 ⁺ cells in the heart failure milieu. The secretion of ECM proteins and angiogenic factors, which are crucial for cardiac remodeling and recovery, was notably enriched in the supernatant of Cyc cells. Thus, during heart failure the microenvironment of Sca-1 ⁺ cells might favor angiogenesis and proliferation suggesting their potential to recover the damaged heart.     

Functional differences in scavenger communities and the speed of carcass decomposition

Carcass decomposition largely depends on vertebrate scavengers. However, how behavioral differences between vertebrate scavenger species, the dominance of certain species, and the diversity of the vertebrate scavenger community affect the speed of carcass decomposition is poorly understood. As scavenging is an overlooked trophic interaction, studying the different functional roles of vertebrate species in the scavenging process increases our understanding about the effect of the vertebrate scavenger community on carcass decomposition. We used motion‐triggered infrared camera trap footages to profile the behavior and activity of vertebrate scavengers visiting carcasses in Dutch nature areas. We grouped vertebrate scavengers with similar functional roles. We found a clear distinction between occasional scavengers and more specialized scavengers, and we found wild boar (Sus scrofa) to be the dominant scavenger species in our study system. We showed that these groups are functionally different within the scavenger community. We found that overall vertebrate scavenger diversity was positively correlated with carcass decomposition speed. With these findings, our study contributes to the understanding about the different functional roles scavengers can have in ecological communities.     

Conditional gene targeting in macrophages and granulocytes using LysMcre mice

Conditional mutagenesis in mice has recently been made possible through the combination of gene targeting techniques and site–directed mutagenesis, using the bacteriophage P1–derived Cre/loxP recombination system. The versatility of this approach depends on the availability of mouse mutants in which the recombinase Cre is expressed in the appropriate cell lineages or tissues. Here we report the generation of mice that express Cre in myeloid cells due to targeted insertion of the cre cDNA into their endogenous M lysozyme locus. In double mutant mice harboring both the LysMcre allele and one of two different loxP–flanked target genes tested, a deletion efficiency of 83–98 was determined in mature macrophages and near 100 in granulocytes. Partial deletion (16) could be detected in CD11c⁺ splenic dendritic cells which are closely related to the monocyte/macrophage lineage. In contrast, no significant deletion was observed in tail DNA or purified T and B cells. Taken together, LysMcre mice allow for both specific and highly efficient Cre–mediated deletion of loxP–flanked target genes in myeloid cells.     

Extracellular oxidative enzyme production and PAH removal in soil by exploratory mycelium of white rot fungi

Selected strains of three species of white rot fungi, Pleurotus ostreatus, Phanerochaete chrysosporium and Trametes versicolor, were grown in sterilized soil from straw inocula. The respective colonization rates and mycelium density values decreased in the above mentioned order. Three- and four-ringed PAHs at 50 ppm inhibited growth of fungi in soil to some extent. The activities of fungal MnP and laccase (units per g dry weight of straw or soil), extracted with 50 mM succinate-lactate buffer (pH 4.5), were 5 to 20-fold higher in straw compared to soil. The enzyme activities per g dry soil in P. ostreatus and T. versicolor were similar, in contrast to P. chrysosporium, where they were extremely low. Compared to the aerated controls, P. ostreatus strains reduced the levels of anthracene, pyrene and phenanthrene by 81–87%, 84–93% and 41–64% within 2 months, respectively. During degradation of anthracene, all P. ostreatus strains accumulated anthraquinone. PAH removal rates in P. chrysosporium and T. versicolor soil cultures were much lower.     

Rhythmische Erregungen in den optischen Zentren von Calliphora erythrocephala

Zusammenfassung Die rhythmischen Aktionspotentiale in den optischen Ganglien der Schmeißfliege (Calliphora erythrocephala) werden untersucht.Wird das Komplexauge von Calliphora belichtet, so können vom Ganglion opticum II schnelle, rhythmische Aktionspotentiale, 'Belichtungsrhythme , abgegriffen werden (Abb. 1). Sie treten im Bereich physiologischer Temperaturen und Lichtintensitäten stets und unabhängig von Schädigungen auf. Sie sind die einzige Form von Erregung, die zwischen dem retinalen Bereich und dem Cerebralganglion nachgewiesen werden kann. Die Belichtungsrhythmen zeigen gesetzmäßige Abhängigkeiten von den Reizgrößen. Es ist daher wahrscheinlich, daß sie in die Kausalkette der bei Belichtung des Auges ablaufenden zentralen Vorgänge eingeschaltet sind.Die optischen Ganglien werden mit einer Doppelmikroelektrode abgetastet. Da die Spannung zwischen zwei eng benachbarten Elektroden in der Nähe der Spannungsquelle am größten sein muß, kann gezeigt werden, daß die Belichtungsrhythmen wahrscheinlich in der äußeren Körnerschicht des Ganglion opticum II entstehen (Abb. 14 und 15).Als Maß für die Größe der Belichtungsrhythmen wird die größte während einer Belichtung auftretende Amplitude gewählt, die 'Maximalamplitud ; sie hängt stetig und reproduzierbar von der Zahl belichteter Ommatidien, von der Lichtintensität und vom Adaptationszustand des Auges ab (Abb. 5, 6, 7, 8, 10, 11 und 12).Die Amplituden der Belichtungsrhythmen klingen bei längerer Belichtung allmählich ab (Helladaptation), (Abb. 1C, Abb. 5). Die Heiladaptationszeit ist der Maximalamplitude proportional (Abb. 6, 8, 9 und 10). Wird die Belichtung vor dem völligen Abklingen der Rhythmen unterbrochen, so werden sie durch den Aus-Effekt des Retinogramms gehemmt und brechen sofort und vollkommen ab (Abb. 1 D). Die Dunkeladaptation ist selbst nach vorangegangener Belichtung mit sehr hohen Lichtintensitäten nach spätestens einer Minute abgeschlossen (Abb. 6 und 7).Die Frequenz der Belichtungsrhythmen liegt zwischen 100 sec^–1 und 250 sec^–1, sie nimmt mit steigender Temperatur zu (Tabelle 1). Die Frequenz ist unabhängig von der Lichtintensität, vom Adaptationszustand d von der Zahl belichteter Ommatidien.Während der einzelnen Belichtung zeigen die Rhythmen ein verschieden starkes Schwanken der Amplitude, eine Amplitudenmodulation. Die Modulation hängt vom Präparat und vom Präparationszustand ab.Durch den Vergleich der verschiedenen Modulationstypen und durch gleichzeitige Ableitung an mehreren Stellen des Ganglions können die physikalischen Überlagerungsvorgänge untersucht werden. Die Einzelschwingungen physiologischer Einheiten überlagern sich am gemeinsamen Ableitwiderstand zwischen den Elektroden. Durch die Art der Überlagerung wird die Modulationsform bestimmt. Sie hängt im besonderen von der Frequenz und der Phasenlage der Einzelrhythmen und von physiologischen Synchronisationsvorgängen ab (Abb. 1, 2 und 16).Auch wenn ein Bereich der Retina gereizt wird, der nur wenige Sinneszellen umfaßt, treten Belichtungsrhythmen wie bei großen Reizflächen auf (Abb. 12). Deshalb wird die Möglichkeit diskutiert, daß bereits die kleinste physiologische Einheit im Ganglion mit rhythmischer Erregung antwortet, die in ihrer Amplitude, nicht aber in ihrer Frequenz vom Reiz abhängt.Herrn Prof. Dr. H. Autrum danke ich für das stete Interesse, das er den Untersuchungen entgegengebracht hat. Die Untersuchungen wurden zum Teil mit Apparaten durchgeführt, die die Deutsche Forschungsgemeinschaft Herrn Prof. Autrum zur Verfügung stellte.     

Effect of buffer conditions on the position of tRNA on the 70 S ribosome as visualized by cryoelectron microscopy

The effect of buffer conditions on the binding position of tRNA on the Escherichia coli 70 S ribosome have been studied by means of three-dimensional (3D) cryoelectron microscopy. Either deacylated tRNAfMet or fMet-tRNAfMet were bound to the 70 S ribosomes, which were programmed with a 46-nucleotide mRNA having AUG codon in the middle, under two different buffer conditions (conventional buffer: containing Tris and higher Mg2+ concentration [10-15 mM]; and polyamine buffer: containing Hepes, lower Mg2+ concentration [6 mM], and polyamines). Difference maps, obtained by subtracting 3D maps of naked control ribosome in the corresponding buffer from the 3D maps of tRNA.ribosome complexes, reveal the distinct locations of tRNA on the ribosome. The position of deacylated tRNAfMet depends on the buffer condition used, whereas that of fMet-tRNAfMet remains the same in both buffer conditions. The acylated tRNA binds in the classical P site, whereas deacylated tRNA binds mostly in an intermediate P/E position under the conventional buffer condition and mostly in the position corresponding to the classical P site, i. e. in the P/P state, under the polyamine buffer conditions.