Genetic diversity over multiple generations of supplementation: an example from Chinook salmon using microsatellite and demographic data

We examined demographic data and microsatellite loci in a supplemented population of Chinook salmon (Oncorhynchus tshawytscha) seeking evidence of changes in genetic diversity or for reduction of the effective size (N _e ) arising from supplementation (i.e., the Ryman-Laikre effect). A supplementation program in the North Fork Stillaguamish River (Washington State, USA) was intended to increase abundance (N) and maintain genetic diversity in the depressed population. Since supplementation expanded in 1986, about 9% of the population has been randomly collected for broodstock. The resulting progeny are released into the wild and comprised 10–60% of all returning adults. Genotypic data were obtained at 14 microsatellite loci from adult samples collected in four years between 1985 and 2001; these data indicated that the allelic richness and expected heterozygosity did not significantly change during this period and that genetic diversity in the captive and wild progeny was similar. The inbreeding and variance N _e estimated from adult escapement between 1974 and 2004 were different for the same generation, but the ratios of effective size to census size were very similar and decreased following supplementation. The variance N _e by the temporal method increased over time, but it is difficult to draw conclusions because of necessary assumptions made during the calculations. Based on these results we conclude that: (1) genetic diversity has been maintained over multiple generations of supplementation; (2) supplementation has not contributed to a loss of genetic diversity; and (3) monitoring genetic effects of supplementation is not straightforward, but it can be useful to look at both demographic and genetic data simultaneously.     

Effects of cis-4-hydroxy- -proline, an inhibitor of Schwann cell differentiation, on the secretion of collagenous and noncollagenous proteins by Schwann cells

The proline analog cis-4-hydroxy- -proline (CHP) was previously shown to inhibit both Schwann cell (SC) differentiation and extracellular matrix (ECM) formation in cultures of rat SCs and dorsal root ganglion neurons. We confirmed that CHP inhibits basal lamina formation by immunofluorescence with antibodies to laminin, type IV collagen, and heparan sulfate proteoglycan. In order to test the hypothesis that CHP inhibits SC differentiation by specifically inhibiting the secretion of collagen, cultures grown in the presence or absence of CHP were metabolically labeled with [³H]leucine and the media were analyzed for relative amounts of (a) collagenous and noncollagenous proteins by assay with bacterial collagenase and by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), or (b) triple-helical collagen by pepsin digestion followed by SDS-PAGE. The results indicate that although CHP inhibited the accumulation of secreted collagen in the culture medium and disrupted collagen triple-helix formation, it also significantly inhibited the accumulation of secreted noncollagenous proteins in the medium. CHP had no significant effect on either total protein synthesis (medium plus cell layer) or cell number. We conclude that CHP does not act as a specific inhibitor of collagen secretion in this system, and thus data from these experiments cannot be used to relate SC collagen production to other aspects of SC differentiation. We discuss the evidence for and against specificity of CHP action in other systems.     

Bush medicine in the Exumas and long island,bahamas a field study

Reports from native informants backed with voucher plant specimens were obtained in a 1969–1970 field study on the Bahama islands of Great Exuma, Little Exuma and Long Island. Over 130 plant species of some 60 families are used within this culture for a wide variety of medicinal purposes. Pertinent background material and personal observations during field work indicated that knowledge of “bush medicine” is fading. The information recorded includes common names of each medicinal plant, uses, and preparations. A systematic list cross-referenced with common names is provided.     

Conservation genomics of the ‘Endangered’ long-nosed bandicoot (Perameles nasuta) population at North Head,Sydney, Australia

Conservation Genetics - Wildlife species impacted by habitat loss and fragmentation often require conservation efforts to maintain populations. Long-nosed bandicoots (Perameles nasuta) still...     

Representing and analysing molecular and cellular function using the computer

Determining the biological function of a myriad of genes, and understanding how they interact to yield a living cell, is the major challenge of the post genome-sequencing era. The complexity of biological systems is such that this cannot be envisaged without the help of powerful computer systems capable of representing and analysing the intricate networks of physical and functional interactions between the different cellular components. In this review we try to provide the reader with an appreciation of where we stand in this regard. We discuss some of the inherent problems in describing the different facets of biological function, give an overview of how information on function is currently represented in the major biological databases, and describe different systems for organising and categorising the functions of gene products. In a second part, we present a new general data model, currently under development, which describes information on molecular function and cellular processes in a rigorous manner. The model is capable of representing a large variety of biochemical processes, including metabolic pathways, regulation of gene expression and signal transduction. It also incorporates taxonomies for categorising molecular entities, interactions and processes, and it offers means of viewing the information at different levels of resolution, and dealing with incomplete knowledge. The data model has been implemented in the database on protein function and cellular processes 'aMAZE' (http://www.ebi.ac.uk/research/pfbp/), which presently covers metabolic pathways and their regulation. Several tools for querying, displaying, and performing analyses on such pathways are briefly described in order to illustrate the practical applications enabled by the model.