Genetic Differentiation of White-Spotted Charr (Salvelinus leucomaenis) Populations After Habitat Fragmentation: Spatial–Temporal Changes in Gene Frequencies

Freshwater fishes that have been isolated by artificial dams have become models for studying the effects of recent barriers on genetic variation and population differentiation. In this study, we examined the genetic structure of 11 populations of white-spotted charr (Salvelinus leucomaenis) by using polymorphic microsatellite loci. Reduced genetic diversity, expressed as the number of alleles and the expected heterozygosity, was observed in all above-dam relative to below-dam populations. Highly significant genetic differentiation (F _ST) was found for all pairwise comparisons among populations, with F _ST-values ranging from 0.023 to 0.639. Both multiple regression analysis and a randomization test revealed that genetic differentiation above and below dams was negatively related to the habitat size of above-dam populations, and was positively related to the time period of isolation. This study is one of the few attempts to predict the population genetic structure of such variable spatial–temporal scales. We conclude that differences in genetic structure above and below dams are related to recent historical population size, whereby sites with a lower effective number of adults are more prone to temporal stochasticity in gene frequencies.     

Ribonuclease production of Rhizopus oryzae IFO 4697 under metal ion stress in liquid culture

 Rhizopus oryzae IFO 4697 was found to produce intracellular ribonuclease (RNase), and its growth and activity could be regulated under selected metal ion stress. The addition of Fe²⁺, Mg²⁺ and Zn²⁺ to the SLSR medium was essential to growth and RNase production. Ca²⁺ and Mo⁶⁺ stimulated RNase production. It is concluded that the addition of 100 mg/ml Ca²⁺, 5 mg/ml Mo⁶⁺, 0.7 mg/ml Zn²⁺, 2 mg/ml Fe²⁺, and 49 mg/ml Mg²⁺ to the SLSR medium was the best condition for producing RNase in high specific activity (3780 U/mg protein). This result indicates that a metal ion-regulated liquid medium is an efficient culture method for RNase production. Received: July 19, 2001 / Accepted: April 8, 2002     

Genotypic and environmental variations in root morphology in rice genotypes under upland field conditions

Improving the water capturing capacity of its large and deep root system is required to stabilize the yield of upland rice in drought-prone areas in the tropics. For the improvement of the root system through breeding and soil management, it is critical to understand the relative importance of genotypic and environmental effect and their interaction on the root development under various soil conditions and agronomic management. This study aimed to quantify and characterize the effect of genotype and environment, soils and N application levels (0 and 90 kg N ha^–1) in the variations of the traits related to the size and distribution of the root system at the flowering stage using 11 rice genotypes in upland fields in southern Luzon in the Philippines. The results indicated that, among the root traits, the genotypic factor accounted for the largest portion of variation for the number of nodal roots, specific root weight (SRW), and R/S ratio, whereas the environmental effect was relatively large for deep root length ratio (DRR) and total root dry weight (RDW). Especially, the DRR, the ratio of root length at deeper than 30 cm per unit area to the RDW, was strongly affected by the site. Nitrogen application increased RDW without a substantial change in the R/S ratio and DRR. On the other hand, significant genotypic variations of RDW and DRR were obtained, which may imply the opportunity for the genetic improvement. Japonica upland varieties showed a large RDW (90–111 g m^–2) associated with high R/S ratio (0.18–0.23) and a high SRW (0.26–0.27 mg cm^–1), whereas aus (Dular) and indica (Vandana) upland varieties had a large DRR (12.5–13.8 m g^–1) with a medium R/S ratio (0.14–0.17), suggesting an efficient formation of a deep root system with a limited biomass allocation to the roots. In addition, the analysis of G × E interaction term for RDW by an Additive Main Effects and Multiplicative Interaction (AMMI) model indicated that the response to soil conditions also differed between these groups. This indicated that proper deployment of genotype to the given soil conditions is also important to maximize the expression of genotypic potentials.     

Report from the in vitro micronucleus assay working group

At the Washington “2nd International Workshop on Genotoxicity Testing” (25–26 March 1999) current methodologies and data for the in vitro micronucleus test were reviewed. As a result, guidelines for the conduct of specific aspects of the protocol were developed. Agreement was achieved on the following topics: choice of cells, slide preparation, analysis of micronuclei, toxicity, use of cytochalasin-B, number of doses, and treatment/harvest times [Environ. Mol. Mutagen. 35 (2000) 167]. Because there were a number of important in vitro micronucleus validation studies in progress, it was not possible to design a definitive, internationally harmonized protocol at that time. These studies have now been completed and the data were reviewed at the Plymouth “3rd International Workshop on Genotoxicity Testing” (28–29 June 2002). Data from studies coordinated by the French Society of Genetic Toxicology, Japanese collaborative studies, European pharmaceutical industry validation studies, along with data from Lilly Research Laboratories were used to prepare conclusions on the main aspects of the in vitro micronucleus protocol. In this paper, the consensus agreements on the protocol for performing the in vitro micronucleus assay are presented. The major recommendations concern:

1. Demonstration of cell proliferation: both cell lines and lymphocytes can be used, but demonstration of cell proliferation in both control and treated cells is compulsory for the acceptance of the test.

2. Assessment of toxicity and dose range finding: assessment of toxicity should be performed by determining cell proliferation, e.g. increased cell counts (CC) or population doubling (PD) without cytochalasin-B, or e.g. cytokinesis-block proliferation index with cytochalasin-B; and by determining other markers for cytotoxicity (confluency, apoptosis, necrosis) which can provide valuable additional information.

3. Treatment schedules for cell lines and lymphocytes.

4. Choice of positive controls: without S9-mix both a clastogen (e.g. mitomycin C or bleomycin) and an aneugen (e.g. colchicine) should be included as positive controls and a clastogen that requires S9 for activity when S9-mix is used (e.g. dimethylnitrosamine, or cyclophosphamide in those cell types that cannot activate this agent directly).

5. Duplicate cultures and number of cells to be scored.

6. Repeat experiments: in lymphocytes, for each experiment blood from 2 different healthy young and non-smoking donors should be compared. In cell lines, the experiments need only to be repeated if the first one is negative.

7. Statistics: statistical significance should not be the sole factor for determining positive results. Biological meaning should serve as a guideline. Examples of statistical analyses are given.

     

NF—κB与疾病

NF－κB是一种多极性基因调控性能的转录因子,能够激活若干个炎症反应、机体免疫反应及多种细胞因子的基因转录过程,从而控制它们的生物合成。本文综述了近年来国外对NF－κB的研究进展,对NF－κB的结构组成、激活途径、生物学功能及其与多种疾病的关系作一介绍。     

Crystal structure of bitiscetin, a von Willebrand factor-dependent platelet aggregation inducer.

Bitiscetin, a C-type lectin-like protein isolated from the venom of the snake Bitis arientans, promotes the interactions between plasma von Willebrand factor (VWF) and platelet membrane glycoprotein Ib (GPIb) to induce platelet aggregation. We report here the crystal structure of bitiscetin at 2.0 A resolution. The overall fold is similar to those of coagulation factor IX/X-binding protein (IX/X-bp) and flavocetin-A (a GPIb-binding protein), although these three proteins are functionally distinct from one another. The characteristic property determining target recognition is explained mainly by the differences in the surface potential on the central concave surface. A negatively charged patch on the surface of bitiscetin is a candidate for the site of binding to the positively charged surface of the VWF A1 domain, as shown in the case of another platelet aggregation inducer, botrocetin. However, a positively charged patch near the central concave surface is unique for bitiscetin and suggests that it is the binding site for the negatively charged surface of the VWF A3 domain. Thus, the interactions accounting for VWF activation by bitiscetin possibly involve both the A1 and A3 domains of VWF, indicating a specific mechanism of VWF activation by bitiscetin.     

PGE2 induces its own secretion in vitro by bovine 270-day placenta but not by 200-day placenta.

Two separate experiments were conducted to determine whether prostaglandin (PG) E2 stimulates the secretion of progesterone by 270- or 200-day Brahman placentas in vitro. Secretion of progesterone, PGF2alpha, pregnancy specific protein B, or estradiol-17beta by 270-day Brahman placentas was not affected (p > or = 0.05) by PGE2, during the 4-h incubation period at the doses tested. Indomethacin or meclofenamic acid decreased (p < or = 0.05) 270-day Brahman placental secretion of PGE and PGF2alpha by 98 and 60%, respectively. However, PGE2 induced (p < or = 0.05) its own secretion, but not the secretion of PGF2alpha (p > or = 0.05), by 270-day Brahman placentas, even in the presence of indomethacin or meclofenamic acid at a dose of 100 ng/mL. Also, secretion of 8-Epi-PGE2 by Day 270 Brahman placentas was increased (p < or = 0.05) by PGE2. Secretion of progesterone, estradiol-17beta, or pregnancy specific protein B by 200-day Brahman placentas was not affected by PGE2, 8-Epi-PGE2, PGF2alpha, estradiol-17beta, or trichosanthin during the 4- or 8-h incubation period (p > or = 0.05). Secretion of estradiol-17beta at 8 h was lower (p < or = 0.05) in all treatment groups and did not differ (p > or = 0.05) among the 8-h incubation treatment groups. Secretion of PGE by 200-day Brahman placentas was reduced (p < 0.05) by indomethacin 72 and 82% and by meclofenamic acid 72 and 96%, respectively, at 4 and 8 h when compared to controls. Secretion of PGF2alpha was reduced (p < or = 0.05) 71 and 86% by indomethacin or 89 and 89% by meclofenamic acid at 4 and 8 h, respectively, and did not differ (p > or = 0.05) between 4 and 8 h of incubation. PGE2 did not (p > or = 0.05) induce secretion of PGE above what was added in any treatment group. PGE in culture media was increased (p < or = 0.05) by 8-Epi-PGE2, pregnancy specific protein B, and the 100 ng/mL PGF2alpha dose (p < or = 0.05), but not by PGE2, progesterone, estradiol-17beta, 8-Epi-PGF2alpha, or trichosanthin. Secretion of PGF2alpha by 200-day Brahman placentas was not affected (p > or = 0.05) by 8-Epi-PGE2, progesterone, or estradiol-17beta, but PGF2alpha secretion was increased (p < or = 0.05) by trichosanthin or PGE2, even in the presence of indomethacin or meclofenamic acid. It is concluded that PGE does not affect secretion of progesterone by 200- or 270-day bovine placentas, but, pregnancy specific protein B may regulate placental secretion of PGE. Also, indomethacin and meclofenamic may affect enzymes converting PGH to PGE rather than acting only on cyclooxygenase because indomethacin and meclofenamic acid lowered PGE secretion by 270-day Brahman placentas more than they lowered PGF2alpha. In addition, it is concluded that PGE2 can induce bovine placental secretion of PGE, but this is dependent upon the stage of gestation.     

Endothelial claudin: claudin-5/TMVCF constitutes tight junction strands in endothelial cells.

Tight junctions (TJs) in endothelial cells are thought to determine vascular permeability. Recently, claudin-1 to -15 were identified as major components of TJ strands. Among these, claudin-5 (also called transmembrane protein deleted in velo-cardio-facial syndrome [TMVCF]) was expressed ubiquitously, even in organs lacking epithelial tissues, suggesting the possible involvement of this claudin species in endothelial TJs. We then obtained a claudin-6-specific polyclonal antibody and a polyclonal antibody that recognized both claudin-5/TMVCF and claudin-6. In the brain and lung, immunofluorescence microscopy with these polyclonal antibodies showed that claudin-5/TMVCF was exclusively concentrated at cell-cell borders of endothelial cells of all segments of blood vessels, but not at those of epithelial cells. Immunoreplica electron microscopy revealed that claudin-5/TMVCF was a component of TJ strands. In contrast, in the kidney, the claudin-5/TMVCF signal was restricted to endothelial cells of arteries, but was undetectable in those of veins and capillaries. In addition, in all other tissues we examined, claudin-5/TMVCF was specifically detected in endothelial cells of some segments of blood vessels, but not in epithelial cells. Furthermore, when claudin-5/TMVCF cDNA was introduced into mouse L fibroblasts, TJ strands were reconstituted that resembled those in endothelial cells in vivo, i.e., the extracellular face-associated TJs. These findings indicated that claudin-5/TMVCF is an endothelial cell-specific component of TJ strands.     

Stock delineation of pink snapper and tailor from Western Australia by analysis of stable isotope and strontium/calcium ratios in otolith carbonate

The ¹⁸O/¹⁶O and ¹³C/¹²C ratios in the otolith carbonate of pink snapper Pagrus auratus and tailor (bluefish) Pomatomus saltatrix, from several locations along the Western Australian coast, indicated that pink snapper stocks are location specific but that tailor stocks are less so. The hypersaline Shark Bay, on the coast of Western Australia, generated strongly characteristic isotopic signatures which serve as natural tags. Otolith carbonate from pink snapper from normal oceanic waters just north of Shark Bay showed no evidence that the fish had been in hypersaline water. Similarly, pink snapper from the hypersaline bay showed no evidence of having spent time at normal oceanic salinity. By contrast, some tailor from oceanic waters showed evidence of having spent considerable time in the bay, and some fish from the bay had oceanic signatures. This suggested that tailor were more migratory than snapper. The similarity in the distribution of the isotopic signatures (from oceanic to hypersaline) in otolith carbonate from tailor from oceanic waters north of Shark Bay (Koks Island), and from those within Shark Bay, indicated a single stock in this region (in contrast to pink snapper). Moreover, tailor from coastal south-western Australia and from the Shark Bay area could be considered seperately for some management purposes. For pink snapper stocks from oceanic waters, oxygen isotope signatures were clearly related to water temperature although the temperature relationship was obscured for fish within Shark Bay because of the strength of the signal generated by the hypersaline water. For tailor the temperature relationship was not obvious, probably because migrations of tailor smeared the temperature effect, and the hypersaline Shark Bay waters dominated, and, possibly, at the southern extemity of the range, the freshwater in some estuaries influenced the isotopic signatures of the otolith carbonate. Strontium/calcium ratios in pink snapper otoliths also indicated a separation of stocks, but for tailor overlap of signatures again suggested migratory behaviour.     

Radioautographic studies on radiosulfate incorporation in the digestive organs of mice.

The sulfate uptake and accumulation in mouse digestive organs were studied by light microscopic radioautography. Two litters of normal ddY mice 30 days after birth, each consisting of 3 animals, were studied. One litter of animals were sacrificed 30 min after the intraperitoneal injections with phosphate buffered Na2(35)SO4, and the other litter animals were sacrificed 12 hr after the injections. Then several digestive organs, the parotid gland, the submandibular gland, the sublingual gland, antrum and fundus of the stomach, the duodenum, the jejunum, the ileum, the caecum, the ascending colon and the descending colon were taken out. The tissues were fixed, dehydrated, embedded in epoxy resin, sectioned, picked up onto glass slides, coated with radioautographic emulsion by a dipping method. AFter the exposure, they were developed, stained with toluidine blue and analyzed by light microscopy. As the results, many silver grains were observed on serous cells of the salivary glands, mucosa and submucosa of the stomach, villous cells and crypt cells of the small intestines and whole mucosa of the large intestines at 30 min after the injection. Then at 12 hr after the injection silver grains were observed on mucous cells of the salivary glands, some of the stomach glands, and mucigen granules of goblet cells in the small intestines and the large intestines. The numbers of silver grains observed in respective organs at 30 min were less than those at 12 hr. From these results, it is concluded that glycoprotein synthesis was demonstrated in several digestive organs by radiosulfate incorporation. In the salivary glands the silver grains were more observed in serous cells at 30 min, while in mucous cells more at 12 hr than 30 min after the injection. In other organs the silver grains were more at 30 min than at 12 hr. These results show the time difference of glycoprotein synthesis in respective organs.