Diversity and Community Structure of Primary Wood-Inhabiting Bacteria in Boreal Forest

DNA-based pyrosequencing analysis of the V1- V3 16S rRNA gene region was used to identify bacteria community and shift during early stages of wood colonization in boreal forest soils. The dataset comprised 142,447 sequences and was affiliated to 11 bacteria phyla, 25 classes and 233 genera. The dominant groups across all samples were Proteobacteria, followed by Bacteroidetes, Acidobacteria, Actinobacteria, Amatimonadetes, Planctomycetes and TM7 group. The community structure of the primary wood-inhabiting bacteria differed between types of forest soils and the composition of bacteria remained stable over prolonged incubation time. The results suggest that variations in soil bacterial community composition have an influence on the wood-inhabiting bacterial structure.     

Antioxidant status in relation to age,condition, reproductive performance and pollution in three passerine species

Oxidative stress has been suggested as a mediator in life‐history trade‐off. By spending more resources on for example reproduction an organism might sacrifice its antioxidant defence. So far, most conclusions on trade‐offs between life‐history traits and oxidative stress have been drawn from laboratory studies using a few model species and there is a need for studies conducted in natural settings. We investigated associations between markers for antioxidant status (antioxidant enzyme activities and antioxidant levels), body condition, age and reproduction in three species of wild‐living passerines. The impact from an anthropogenic stressor (metal pollution) was also assessed. The three bird species showed interspecific variation in their SOD and CAT activities, indicating different pathways to eliminate radicals. The age of females affected both antioxidant status and the breeding performance, indicating the importance of age as a factor in life‐history studies. Old birds had lower levels of antioxidants/antioxidant enzyme activities and they produced larger broods/more successful broods, though the latter might be confounded by surviving females having increased fitness. Metal exposure had a negative impact on breeding, and improved breeding outcome was also associated with increased antioxidant defence, but metal exposure was not directly related to the oxidative status of birds, emphasizing that additional stressors might independently affect the same traits. Our results highlight that caution has to be taken when generalizing and extrapolating results to even closely related species. The results support the idea that there is a cost of reproduction, in terms of increased resources spent on antioxidant defence, though this should be confirmed with experimental studies.     

Fire history and vegetation recovery in two raised bogs at the Baltic Sea

Questions: What were the bog fire patterns and frequencies in two boreal peatlands during the last 5000 years? What is the nature and time‐scale of post‐fire vegetation successions? Were fire events related to climate? Location: Männikjärve bog, central east Estonia; Kontolanrahka bog, southwest Finland. Methods: Macroscopic charcoal, plant macrofossils and radiocarbon dating were examined. Redundancy analysis was used in the assessments. Results: During the last 5000 years, both of the above peatlands have experienced several fire events. A typical pre‐fire vegetation community consisted of dry hummock Sphagnum spp., often accompanied by Calluna vulgaris. Only the most severe occasional fires resulted in a dramatic change in the vegetation composition. In these cases, a wet shift occurred, where the pre‐fire hummock community was replaced by a wet hollow community. Calluna vulgaris was found to be a key species in both pre‐ and post‐fire vegetation dynamics. The recovery time of dry microtopes following severe combustion and the subsequent hydrological change could take up to 350 years. Even after a long‐lasting wet phase, the post‐fire disturbance succession led towards a dry hummock community. Conclusions: Fire succession appeared to be cyclic, starting as and developing towards a dry hummock community. Fires have been a regular phenomenon in boreal bogs, even in regions with rather low human impact. The fire history records did not indicate any direct link to the regional long‐term climate.     

Differences in CO2 dynamics between successional mire plant communities during wet and dry summers

Questions: What impact do a wet and a dry growing season have on CO₂ dynamics of mire plant communities along a primary succession gradient from the initiation stage to the bog stage? Location: Mires on a land uplift coast, Finland. Methods: We measured CO₂ dynamics and vascular plant green area development on five mires that form a sequence of mire succession. TWINSPAN was used to define successional mire plant communities and regression analyses were used to explore the temporal variation in CO₂ dynamics of the communities. Results: CO₂ dynamics of successional plant communities reacted differently to a wet and a dry growing season. The net CO₂ uptake rate of the earlier successional communities decreased in the dry growing season due to a decrease in photosynthesizing leaf area. Concurrently, CO₂ uptake of the later successional communities moderately increased or did not change. Generally, the difference in net ecosystem exchange (NEE) between a dry and a wet year resulted from the altered rate of gross photosynthesis (P_G) rather than ecosystem respiration (R_E). Conclusions: Critical factors for the more stable carbon (C) gas dynamics in the later stages of mire succession were (1) higher autogenic control of the physical environment and (2) an increase in the number of factors regulating the P_G rate. These factors may buffer mire ecosystems (in terms of the C sink function) from extreme and unfavourable variations in environmental conditions.     

Quantification of point mutations associated with Leber hereditary optic neuroretinopathy by solid-phase minisequencing

About two-thirds of patients with Leber hereditary optic neuroretinopathy (LHON) harbor mutations in mitochondrial DNA at positions 11778 (ND4) or 3460 (ND1). Thus, the clinical diagnosis of LHON can often be confirmed with mutation analysis. Detection of pathogenic mutations and quantification of heteroplasmy has mainly relied on PCR and restriction site analysis and densitometric scanning. We applied the recently developed solid-phase minisequencing method, based on primerguided nucleotide incorporation, to the simultaneous detection and quantitation of the ND4/11778 and ND1/3460 mutations. The method was highly sensitive, heteroplasmy as low as 1.5% being easily detected. Rapid, reproducible, and accurate results prove solid-phase minisequencing to be the method of choice for quantitative analysis of LHON mutations.     

Endomitosis: A reappraisal

Summary The concept and role of endomitosis is reevaluated in the light of observations on three organisms. Endomitosis which morphologically agrees with Geitler's (1939) classical definition is compared in tapetal cells of the liliaceous plant Eremurus, in the septal cells of the testicular follicles of the grasshopper Melanoplus, and in human cells from normal and molar trophoblasts and cervical cancer. These observations, together with those of Kidnadze and Istomina (1980), show that functionally at least two fundamentally different types of endomitosis exist, although morphologically the stages resemble each other in the three organisms. In the first type, exemplified by Eremurus, each endomitosis leads to a chromosome constitution which represents one level higher ploidy, a course that has been assumed to be characteristic of endomitosis in general. The second type, observed in its most characteristic form in the grasshopper, seems to be stationary: no DNA synthesis occurs, but an intensive RNA synthesis takes place. Presumably such cells have reached a final state in their development and are specialized in manufacturing one or more gene products. Endomitosis in normal placenta comes near this type, although DNA synthesis takes place in occasional cells. However, similar endomitotic nuclei in the hydatiform moles are in the process of DNA synthesis. When endomitosis is analyzed in different organisms and tissues, the observation that this process is not one entity should be kept in mind.     

Microscopic examination of bacteria in Fe(III)-oxide deposited from ground water

Ochreous sludge deposited in the course of aeration of ground water contained an assortment of bacterial forms and structures which were investigated by light microscopy, scanning electron microscopy, and transmission electron microscopy. Bacterial structures were often covered by iron deposition which could be removed by acidification of the samples. Sulfuric acid treatment was consistently better than hydrochloric acid to dissolve iron without a considerable damage to the bacterial cells. Partial dissolution of amorphous ferric iron was achieved by acidifying the samples with oxalic acid or citric acid prior to the preparation for electron microscopy.     

Random arrangement of chromosomes inUvularia (Liliaceae)

Chromosome arrangement in interphase has been inferred from an analysis of the relative positions of the chromosomes and the chromosome arms in untreated haploid pollen grain metaphases ofUvularia grandiflora. The distances between centromeres forming the smallest possible circle were measured in 43 metaphases. The relative positions of the chromosomes did not differ significantly from randomness. Neither did similar-sized chromosome arms show any tendency to be next to each other. The results thus disagree both with the hypothesis ofComings (1968) that each chromosome occupies a definite position in the interphase nucleus and with the claim ofBennett (1982) that similar-sized chromosome arms lie next to each other.