Influence of water-miscible organic solvents on kinetics and enantioselectivity of the (R)-specific alcohol dehydrogenase from Lactobacillus brevis

Using the organic solvents acetonitrile and 1,4-dioxane as water-miscible additives for the alcohol dehydrogenase (ADH)-catalyzed reduction of butan-2-one, we investigated the influence of the solvents on enzyme reaction behavior and enantioselectivity. The NADP(+)-dependent (R)-selective ADH from Lactobacillus brevis (ADH-LB) was chosen as biocatalyst. For cofactor regeneration, the substrate-coupled approach using propan-2-ol as co-substrate was applied. Acetonitrile and 1,4-dioxane were tested from mole fraction 0.015 up to 0.1. Initial rate experiments revealed a complex kinetic behavior with enzyme activation caused by the substrate butan-2-one, and increasing K(M) values with increasing solvent concentration. Furthermore, these experiments showed an enhancement of the enantioselectivity for (R)-butan-2-ol from 37% enantiomeric excess (ee) in pure phosphate buffer up to 43% ee in the presence of 0.1 mol fraction acetonitrile. Finally, the influence of the co-solvents on water activity of the reaction mixture and on enzyme stability was investigated.     

Transient lateral transport of platelet-sized particles in flowing blood suspensions.

Concentration profiles of 2.5 microns latex beads were measured to demonstrate lateral transport of platelet-sized objects in flows of blood suspensions; the flows had equivalent Poiseuille wall shear rates (WSRs) from 250 to 1220 s-1. Each experimental trial began with a steady flow of suspension without beads in a thin-walled capillary tube (219 microns ID; 10.2 microns SD). The tube entrance was then switched to a reservoir containing suspension of equal hematocrit, but with beads, for a short interval of flow at the same WSR. This process established a paraboloidal tongue of labeled suspension with a transient concentration gradient at its surface. The tube and contents were rapidly frozen to fix the suspended particles in flow-determined locations. Segments of frozen tube were collected at distances from the entrance corresponding to 13%, 39%, and 65% of the axial extent of the ideal paraboloidal tongue. Concentration profiles were estimated from distances measured on fluorescence microscope images of cross-cut tube segments. Experiments used tubes either 40 or 50 cm long, suspension hematocrits of 0, 15, or 40%, and bead concentrations in the range of 1.5-2.2 x 10(5)/mm3. Profiles for 0% hematocrit suspension, a dilute, single-component suspension, had features expected in normal diffusive mixing in a flow. Distinctly different profiles and more lateral transport occurred when the suspensions contained red cells; then, all profiles for 13% extent had regions of excess bead concentration near the wall. Suspension flows with 40% hematocrit exhibited the largest amount of lateral transport. A case is made that, to a first approximation, the rate of lateral transport grew linearly with WSR; however, statistical analysis showed that for 40% hematocrit, less lateral transport occurred when the WSR was 250 s-1 or 1220 s-1 than 560 s-1, thus indicating that the rate behavior is more complex.     

Evolution of eutherian cytochrome c oxidase subunit II: heterogeneous rates of protein evolution and altered interaction with cytochrome c

Cytochrome c oxidase subunit II (COII), encoded by the mitochondrial genome, exhibits one of the most heterogeneous rates of amino acid replacement among placental mammals. Moreover, it has been demonstrated that cytochrome c oxidase has undergone a structural change in higher primates which has altered its physical interaction with cytochrome c. We collected a large data set of COII sequences from several orders of mammals with emphasis on primates, rodents, and artiodactyls. Using phylogenetic hypotheses based on data independent of the COII gene, we demonstrated that an increased number of amino acid replacements are concentrated among higher primates. Incorporating approximate divergence dates derived from the fossil record, we find that most of the change occurred independently along the New World monkey lineage and in a rapid burst before apes and Old World monkeys diverged. There is some evidence that Old World monkeys have undergone a faster rate of nonsynonymous substitution than have apes. Rates of substitution at four-fold degenerate sites in primates are relatively homogeneous, indicating that the rate heterogeneity is restricted to nondegenerate sites. Excluding the rate acceleration mentioned above, primates, rodents, and artiodactyls have remarkably similar nonsynonymous replacement rates. A different pattern is observed for transversions at four-fold degenerate sites, for which rodents exhibit a higher rate of replacement than do primates and artiodactyls. Finally, we hypothesize specific amino acid replacements which may account for much of the structural difference in cytochrome c oxidase between higher primates and other mammals.      

Structure of the metal-nucleotide complex in the acetate kinase reaction. A study with gamma-32P-labeled phosphorothioate analogs of ATP

The synthesis of the gamma-32P-labeled diastereomers of adenosine 5'-O-(1-thiotriphosphate) (ATP alpha S) and the Sp isomer of adenosine 5'-O-(2-thiotriphosphate) (ATP beta S) by a modification of the Glynn and Chappell method (Glynn, I. M., and Chappell, J. T., (1964) Biochem. J. 90, 147-149) is described. These analogs were tested as substrates for acetate kinase in the presence of several divalent metal ions. Both isomers of ATP alpha S are substrates in the presence of Mg2+, Mn2+, Co2+, Zn2+, and Cd2+, the Sp isomer being preferred by a factor of between 4.8 (Mg2+) and 52.5 (Cd2+). Only the Rp isomer of ATP beta S is a substrate in the presence of Mg2+, and the Sp isomer becomes a better substrate in the presence of Mn2+, Co2+, and Zn2+; both isomers are equally good substrates in the presence of Cd2+. The change in specificity upon replacing Mg2+ by Cd2+ is greater than 1800 at beta-phosphorus and 10 at alpha phosphorus. These results provide a basis for proposing that the lambda screw sense configuration of the beta, gamma-bidentate MgATP complex is the substrate for acetate kinase. In the reverse reaction, both Sp and Rp isomers of ADP alpha S are substrates in the presence of all metal ions tested, the Sp isomer preferred by a factor between 12.3 (Mg2+) and 45.5 (Cd2+). In the presence of Mg2+, Mn2+, and Co2+, only the Rp isomer of ATP beta S is synthesized from prochiral ADP beta S, while a mixture of Rp and Sp isomers is synthesized in the presence of Zn2+ and Cd2+. These results are analogous to those for the forward reaction and suggest that the Mg.ADP complex which binds as a substrate in the reverse reaction, and is released as a product in the forward reaction, is the beta-monodentate. The classification of acetate kinase as an enzyme having a type I mechanism (Dunaway-Mariano, D. and Cleland, W. W. (1980) Biochemistry 19, 1506-1515) for kinases, is discussed.     

Stabilisation of DNA by Incorporation of Phosphothioate Groups

Abstract

The synthesis of Rp- and Sp-d (GGsAATTCC), an octanucleotide containing the recognition sequence for the restriction endonuclease Eco R1 as well as a phosphorothioate group at the cleavage site is described. Only the Rp-diastereomer is a substrate for Eco R1. Viral DNA, containing exclusively phosphate groups in the (+)strand, and phosphorothioate groups 5′-to deoxyadenosine in the (-)strand yields nicked DNA on cleavage by Eco R1 as an isolatable intermediate. Other restriction enzymes show a similar pattern of hydrolysis. - The influence of phosphorothioate groups on the B Z conformational change is demonstrated on phosphorothioate analogues of d(C-G)₄ and d(G-C)₄.     

Ribozyme-mediated RNA degradation in nuclei suspension.

Ribozymes containing 2'-fluoro- and 2'-amino-modified pyrimidine nucleosides in combination with terminal phosphorothioate linkages were targeted against HTLV-I tax RNA. In order to examine the activity of such chemically modified ribozymes in the nuclear environment, they were incubated with nuclei of a Tax-transformed mouse fibroblast cell line. Ribozyme cleavage of tax RNA was analyzed by the RNase protection assay. Comparison of the cleavage of tax RNA isolated nuclei with that of tax RNA present in nuclei suspension revealed a 30 times more efficient cleavage of the latter one. Pre-treatment with proteinase K and SDS abolished the enhancement of the ribozyme-mediated RNA cleavage. Catalytically inactive ribozymes did not yield any cleavage products. These results demonstrate an augmenting effect of nuclear proteins on the ribozyme-mediated RNA cleavage.     

Protease-catalyzed synthesis of the tripeptide CCK<Subscript>26–28</Subscript>, a fragment of CCK-8

Summary. Two enzymatically synthetic strategies of the tripeptide derivative PhAc-Asp(OMe)-Tyr-Met-OAl are reported. The second strategy gains the advantage of more economical starting materials, less reaction steps and a higher overall isolated yield of this tripeptide fragment over the first strategy. The effect of the acyl-donor ester concentration and structure, the C-α protecting group of the nucleophile, reaction media, enzyme and the carrier on the tripeptide derivative synthesis were studied. This tripeptide selected is a fragment of the cholecystokinin C-terminal octapeptide (CCK-8), a potential therapeutic agent in the control of gastrointestinal function and also a drug candidate for the treatment of epilepsy.     

Changes in follicular steroidogenic enzymes following the preovulatory surge of gonadotropins and experimentally-induced atresia

Atresia that is induced experimentally and the preovulatory surge of gonadotropins stimulate similar changes in follicular steroidogenesis in the rat, i.e., both enhance production of progesterone and reduce production of androgen and 17 beta-estradiol. In this study, mature cycling rats were either stimulated with human chorionic gonadotropin (hCG) or atresia was induced by blocking the proestrous surge of gonadotropins through the use of pentobarbitone or hypophysectomy. Changes in activity of C17,20-lyase (lyase) and 20 alpha-hydroxysteroid dehydrogenase (20 alpha SDH) were estimated from homogenates of 10-15 Graafian follicles by evaluating conversion of precursors to products that were separated and quantified by high performance liquid chromatography (HPLC). Within 3 h of administration to proestrous rats, hCG reduced follicular lyase activity (pmole androstenedione produced per mg protein during 30 min incubation) from (mean +/- SEM) 221.3 +/- 24.2 to 120.2 +/- 30.4, and to 8.5 +/- 0.1 after 9 h. By contrast, 20 alpha SDH activity increased somewhat after hCG stimulation. Similar changes were observed after follicular atresia was induced, with hypophysectomy causing the most striking changes. Lyase was reduced to 60% within 6 h after the operation, and to 2% within 24 h. Activity of 20 alpha SDH was doubled within 6 h of hypophysectomy and remained high even 24 h later. Thus, in preovulatory rat follicles, luteinizing hormone (LH)/hCG reduces lyase activity and similar changes occur in such follicles undergoing atresia. There was no clear correlation between 20 alpha SDH and lyase activities; our results did not support the argument that 20 alpha SDH products regulate lyase following the ovulatory stimulus and atresia.(ABSTRACT TRUNCATED AT 250 WORDS)