Production of benthic macroinvertebrate communities along a southern Appalachian river continuum

1. Annual production was estimated for macroinvertebrate communities of principle habitats along a first- to seventh-order river continuum in the southern Appalachian Mountains (U.S.A.). Annual production was relatively low in depositional habitats, pebble/gravel substrata, and on cobble devoid of plant biomass (mosses and hydrophytes). Production was greater in bedrock habitats and greatest on hydrophyte-covered cobble, with estimates reaching 364 g AFDM (ash-free dry mass)m^–2 yr^–1 in a sixth-order river reach. Annual production in depositional habitats was correlated to standing crops of benthic organic material (BOM) in low-order stream reaches but not in higher-order reaches, indicating differences in BOM availability with stream size. In cobble, pebble/gravel and bedrock habitats production was significantly correlated to standing crops of aquatic plants, which can stabilize substrata and enhance access of collector-filtering invertebrates to entrained food resources. 2. By accounting for proportional availability of habitats along the continuum, estimates of total production ranged from 5 to 154 g AFDM m^–2 yr^–1, and increased significantly with stream size. Annual production estimated for sixth- and seventh-order reaches of the continuum were amongst the highest reported thus far for lotic systems. Organization of the benthic community along the continuum, based on production estimates for individual functional feeding-groups, generally supported predictions of the River Continuum Concept (RCC): shredder contributions were greatest in low-order reaches and declined downstream; scraper percentages were greatest in the middle of the continuum; collector-filterer contributions increased with increasing stream size. Longitudinal trends for collector-gatherers and predators did not support RCC predictions; these groups appeared to be influenced by localized changes in habitat availability and occurrence of vertebrate predators along the continuum.     

Microsatellite DNA polymorphism confirms reproductive isolation and reveals differences in population genetic structure of cryptic pipistrelle bat species

Previous studies have indicated that the common European pipistrelle bat ( Pipistrellus pipistrellus ) comprises two cryptic species, P. pipistrellus and Pipistrellus pygmaeus , which differ in echolocation call frequency and mitochondrial DNA sequence. However, levels of divergence based on nuclear markers have not been examined, and hence the potential for male-mediated gene flow between the species cannot be discounted. Moreover, little is known about population structure and migration patterns in either species. Here, we describe the use of microsatellites to investigate nuclear DNA differentiation between, and the pattern of population genetic structure within, the two cryptic pipistrelle species. In total, 1300 individuals from 82 maternity colonies were sampled across the British Isles and Continental Europe. We show, using multivariate analyses, that colonies of the same species are generally genetically more similar to each other than to those from the other species regardless of geographical location. Our findings support the hypothesis that the species are reproductively isolated. Significant patterns of genetic isolation by distance were identified in both species, indicating that mating may occur before any long-distance autumnal migration. The presence of a sea channel does not confer higher levels of genetic differentiation among colonies over and above distance alone in either species. Differences in genetic population structure were identified between the species, with P. pipistrellus showing a wider range of levels of genetic differentiation among colonies and a stronger relationship between genetic and geographical distance than P. pygmaeus . Differences in dispersal, mating behaviour, colony size and/or postglacial colonization patterns could contribute to the differences observed.  © 2007 The Linnean Society of London, Biological Journal of the Linnean Society , 2007, 90 , 539–550.     

The effect of methanogen growth on mineral substrates: will Ni markers of methanogen‐based communities be detectable in the rock record?

Methanogens, thought to be present on early Earth, have a high requirement for Ni, suggesting that Ni utilization could be a potential biosignature for methanogens if enhanced Ni extraction from surrounding minerals accompanies methanogenic growth. To test the potential for such Ni extraction from minerals by methanogens, Ni release from Ni‐containing silicate glass was measured in Ni‐free growth medium in the presence of the methanogen Methanothermobacter thermoautotrophicus (average pH ∼7.0) and observed to be higher than an abiotic control (average pH ∼6.8). However, batch dissolution experiments and a siderophore assay indicate that cell exudates such as siderophores, low molecular weight organic acids, or lysates accompanying cell death are not responsible for the observed increase in Ni release rate. In addition, scanning electron microscopy (SEM) shows little to no evidence of direct microbe–mineral interactions such as biofilms or pitting. Instead, comparison with abiotic experiments suggests that changes in pH due to CO₂ uptake may be responsible for enhanced dissolution in the presence of metabolizing cells. These results document that methanogens may not preferentially extract Ni from surrounding minerals although they may indirectly affect mineral reaction rates that are pH sensitive. Thus identifiable Ni biosignatures may not exist in the rock record to document the presence of methanogens on early Earth or Mars.     

Simian Tumour Virus Proliferation in Inoculated <Emphasis Type="Italic">Macaca mulatta</Emphasis>

AN oncorna-type virus (M-PMV) was detected in a spontaneous breast tumour of a female rhesus monkey^1,2. This virus is morphologically and biochemically similar to oncogenic RNA viruses of other species^3–5. Using in vitro tissue culture assays and electron microscopy we have observed proliferation of infectious virus in hyperplastic lymph nodes of M-PMV inoculated infant rhesus monkeys.     

Production of θ Antibody by Mice that Fail to Reject θ-Incompatible Skin Grafts

EVIDENCE that female mice failing to reject male skin grafts are nevertheless producing H-Y antibody indicates that graft survival in this case is not due to failure of the recipient to respond to graft antigens¹. Survival of skin grafts in recipients that are producing specific anti-graft antibody is known in another system: radiation chimaeras of constitution (C57BL × A)→A often fail to reject C57BL skin grafts² although they are producing Sk alloantibody³. Sk alloantigens are limited to epidermal cells and brain and so give rise to skin-selective homograft reactions by radiation chimaeras^2,3.     

The recent diatom history of Loch Leven, Kinross

Diatoms in the top metre of lake sediment have been studied for indications or recent changes in the environment of Loch Leven. The diatoms indicate a eutrophic, alkaline lake with Melosira italica ssp. subarctica, Tabellaria Flocculosa and Stephanodiscus astraea the dominant taxa at the base of the 1-m section. There is then an appeance of Melosira ambigua and Stephanodiscus hantzschii suggesting a richer environment. Post A.D. 1816 changes in taxa suggest possible correlation with the lowering of lake level in 1830 and the dominance of Diatoma elongatum, Cyclotella pseudostelligera, Stephanodiscus astraea var. minutula, S. tenuis, S. hantzschii, and Synedra rumpens and var. soctica in zone 4 agrees with present-day plankton records.     

How protective are refuges? Quantifying algal protection in rock crevices

1. Refuges can be functionally important if they harbour sufficient organisms during disturbance to augment population recovery. I quantified the protection of stream algae in crevice refuges using the applied, severe disturbance of scrubbing. Scrubbing effectively removed visible surface algae, and algae remaining on stones were considered protected. 2. In a field experiment, substrata with different quantities of crevice (glass bottles; greywacke; schist; pumice) were incubated in a channelised stream. The possible influence of growth conditions was investigated concurrently; half of the substrata were suspended in the water column, the rest were placed on the bottom (providing differential access to grazers and exposing them to different flow conditions). 3. Rougher substrata had greater total algal biomass than smoother substrata; this pattern resulted from more algal biomass in crevices of the rougher substrata. Protection from scrubbing ranged from about 5% of total algal biomass on glass and greywacke to 80% on pumice. In contrast, algal biomass removed by scrubbing was similar among the experimental substrata. Suspended substrata had more chironomid grazers than those on the bottom, and also greater algal biomass, possibly because of high algal concentrations in the chironomid retreats. 4. A survey of stones from three rivers supported the experimental results; namely, rough pumice protected more algae from scrubbing than did smoother greywacke. 5. In a separate experimental assay, there was no difference in algal growth on agar plates with and without added powdered rock substrata, suggesting that crevice characteristics and not substratum chemistry produced the differences in algal assemblages between rough and smooth surfaces. 6. Results indicate that rough stream stones may protect sufficient algae to augment their recovery in streams following disturbance.     

Methane bubbles in surface peat cores: in situ measurements

The quantification of greenhouse gas sources and sinks is important to understanding the impact of climate change. Methane (CH₄) is a potent greenhouse gas, which, on a global scale, is released largely as a product of anaerobic microbial decomposition and predominantly from wetlands. A zone of intense CH₄ production just below the water table is thought to contribute significantly to the overall flux from peat bogs. We describe the use of membrane inlet quadrupole mass spectrometry (QMS) to confirm the existence of bubbles, their gaseous concentrations and their localization at a fine spatial resolution within intact peat cores. We use the distribution of the noble gas argon (Ar) and the distinct QMS responses to dissolved and gaseous (bubble) phases to identify trapped bubbles with a resolution of 0.6 mm. Bubbles with CH₄ concentrations of up to 20 kPa were widely distributed in the upper 300 mm of the cores with ～11% of all profiles comprising bubbles. The dissolved concentrations responsible for the bubbles were on average 83±80 μm , indicating lower concentrations relative to other QMS studies. We suggest that if the distinction between dissolved and gaseous phases is not made in studies of CH₄ within peat profiles then the prominence of bubbles is likely to result in overestimates of dissolved CH₄ concentrations. Fluxes of CH₄ from peat as a result of drawdown or other perturbation are likely to be large, rapid and short lived because of bubble burst, and also larger than from peat without bubbles. We suggest that the dynamics of fluxes need to be modelled taking into account both gaseous and dissolved phases. Estimates of potential fluxes that assume CH₄ is dissolved are likely to overestimate fluxes if the gaseous phase has not been taken into account.     

Sticky bivalves from the Mesozoic: clues to the origin of the anomalodesmatan arenophilic system

Arenophilic glands represent the only molluscan example of multicellular organs solely concerned with adhesion of foreign particles to the external surfaces of an organism. The glands are exclusive to the bivalve clade Anomalodesmata, but do not occur in all component taxa, having been declared absent in a number of families, including Pholadomyidae. This paper records and describes for the first time the arenophilic apparatus of Pholadomya candida G. B. Sowerby I, 1823, and demonstrates that secretion from these glands is at times preserved in the fossil record. In P. candida , arenophilic glands in the middle mantle folds discharge their products on top of the shell as the animal grows, forming radial lines of secretion that comprise a meandering main strand and numerous thin threads projecting in tufts. The arrangement is similar to that of other families, corroborating the hypothesis that the glands are a synapomorphy of crown-group anomalodesmatans. Instances of preserved secretion in fossil Pholadomya , ranging in age almost to the initial appearance of the genus in the Late Triassic, suggest that fossilized arenophilic secretion may aid systematic studies of problematic fossil groups traditionally included in Anomalodesmata.     

Gene expression profiling: opening the black box of plant ecosystem responses to global change

The use of genomic techniques to address ecological questions is emerging as the field of genomic ecology. Experimentation under environmentally realistic conditions to investigate the molecular response of plants to meaningful changes in growth conditions and ecological interactions is the defining feature of genomic ecology. Because the impact of global change factors on plant performance are mediated by direct effects at the molecular, biochemical, and physiological scales, gene expression analysis promises important advances in understanding factors that have previously been consigned to the 'black box' of unknown mechanism. Various tools and approaches are available for assessing gene expression in model and nonmodel species as part of global change biology studies. Each approach has its own unique advantages and constraints. A first generation of genomic ecology studies in managed ecosystems and mesocosms have provided a testbed for the approach and have begun to reveal how the experimental design and data analysis of gene expression studies can be tailored for use in an ecological context.