Sudden expansion of a single brown bear maternal lineage across northern continental Eurasia after the last ice age: a general demographic model for mammals?

The brown bear has proved a useful model for studying Late Quaternary mammalian phylogeography. However, information is lacking from northern continental Eurasia, which constitutes a large part of the species' current distribution. We analysed mitochondrial DNA sequences (totalling 1943 bp) from 205 bears from northeast Europe and Russia in order to characterize the maternal phylogeography of bears in this region. We also estimated the formation times of the sampled brown bear lineages and those of its extinct relative, the cave bear.
Four closely related haplogroups belonging to a single mitochondrial subclade were identified in northern continental Eurasia. Several haplotypes were found throughout the whole study area, while one haplogroup was restricted to Kamchatka. The haplotype network, estimated divergence times and various statistical tests indicated that bears in northern continental Eurasia recently underwent a sudden expansion, preceded by a severe bottleneck. This brown bear population was therefore most likely founded by a small number of bears that were restricted to a single refuge area during the last glacial maximum. This pattern has been described previously for other mammal species and as such may represent one general model for the phylogeography of Eurasian mammals. Bayesian divergence time estimates are presented for different brown and cave bear clades. Moreover, our results demonstrate the extent of substitution rate variation occurring throughout the phylogenetic tree, highlighting the need for appropriate calibration when estimating divergence times.     

cpFBPaseII, a novel redox-independent chloroplastic isoform of fructose-1,6-bisphosphatase

A full-length FBPase cDNA has been isolated from Fragaria  ×  ananassa (strawberry) corresponding to a novel putative chloroplastic FBPase but lacking the regulatory redox domain, a characteristic of the plastidial isoenzyme (cpFBPaseI). Another outstanding feature of this novel isoform, called cpFBPaseII, is the absence of the canonical active site. Enzymatic assays with cpFBPaseII evidenced clear Mg²⁺-dependent FBPase activity and a K _m for fructose-1,6-bisphosphate (FBP) of 1.3 m m . Immunolocalization experiments and chloroplast isolation confirmed that the new isoenzyme is located in the stroma. Nevertheless, unlike cpFBPaseI, which is redox activated, cpFBPaseII did not increase its activity in the presence of either DTT or thioredoxin f (TRX f ) and is resistant to H₂O₂ inactivation. Additionally, the novel isoform was able to complement the growth deficiency of the yeast FBP1 deletion fed with a non-fermentable carbon source. Furthermore, orthologues are restricted to land plants, suggesting that cpFBPaseII is a novel and an intriguing chloroplastic FBPase that emerged late in the evolution of photosynthetic organisms, possibly because of a pressing need of land plants.     

LATE CAMBRIAN PLECTRONOCERID NAUTILOIDS AND THEIR ROLE IN CEPHALOPOD EVOLUTION

Abstract:  Numerous plectronocerid nautiloids appear in the Upper Cambrian of China. We have restudied their siphuncular structure, first described some 20 years ago. The siphuncle is characterized by: (1) long and holochoanitic septal necks dorsally but short and recurved necks laterally and ventrally; (2) strongly expanded connecting rings laterally; (3) two calcified layers in each connecting ring, outer spherulitic-prismatic and inner compact, the latter perforated by numerous pore canals; and (4) highly oblique siphuncular segments. The strongly expanded lateral sides of the connecting rings, together with the highly oblique course of the siphuncular segments, considerably enlarged the surface area of the connecting rings in each chamber, thereby increasing the transport capacity of cameral liquid. Thus, from their first appearance, plectronocerid nautiloids had developed a siphuncle for the replacement of cameral liquid with gases, and this system had a better and a more sophisticated design than that seen in stratigraphically younger nautiloids. However, their small orthoconic or slightly cyrtoconic shells were not well adapted for jet-powered swimming.     

Callus Induction and Plant Regeneration in Alstroemeria

Callus was induced from mature embryos of Alstroemeria cv. ‘Butterfly’cultured on MS medium supplemented with 2·0 or 4·0mg dm^–3 2,4–D or picloram and incubated at 25°Cin the dark. The effect of auxin concentration and precultureof embryos was studied. Callus was capable of regeneration aftertransfer to MS medium containing 4.0 mg dm°3 BAP. Shootsand whole plantlets were regenerated. The effect of growth regulators,used in the callus induction medium and the regeneration medium,on plant regeneration was studied Key words: Alstroemeria, callus, plant regeneration.     

Development of taxon‐specific sequence characterized amplified region (SCAR) markers based on actin sequences and DNA amplification fingerprinting (DAF): a case study in the Phoma exigua species complex

Phoma exigua is considered to be an assemblage of at least nine varieties that are mainly distinguished on the basis of host specificity and pathogenicity. However, these varieties are also reported to be weak pathogens and secondary invaders on non‐host tissue. In practice, it is difficult to distinguish P. exigua from its close relatives and to correctly identify isolates up to the variety level, because of their low genetic variation and high morphological similarity. Because of quarantine issues and phytosanitary measures, a robust DNA‐based tool is required for accurate and rapid identification of the separate taxa in this species complex. The present study therefore aims to develop such a tool based on unique nucleotide sequence identifiers. More than 60 strains of P. exigua and related species were compared in terms of partial actin gene sequences, or analysed using DNA amplification fingerprinting (DAF) with short, arbitrary, mini‐hairpin primers. Fragments in the fingerprint unique to a single taxon were identified, purified and sequenced. Alignment of the sequence data and subsequent primer trials led to the identification of taxon‐specific sequence characterized amplified regions (SCARs), and to a set of specific oligonucleotide combinations that can be used to identify these organisms in plant quarantine inspections.     

Ribosomal DNA of Leishmania brasiliensis: Number of Ribosomal Copies and Gene Isolation1

ABSTRACT. The DNA content of the hemoflagellate Leishmania brasiliensis. strain Y, has been determined by colorimetric reactions and found to be nearly 0.226 pg/cell. When this DNA is bound to filters and hybridized with labeled rRNA from the same organism, saturation is reached at 0.47% of the DNA, corresponding to an estimated 160 ribosomal gene copies. When the DNA is sheared and centrifuged to equilibrium in CsCl gradients, two major satellites of the main band (p = 1.712 g/cm³) are observed: a heavy one (1.720 g/cm³), which hybridizes with labeled rRNA, and a light one (1.699 g/cm³) with the electron microscopic characteristics of the kinetoplast DNA network.     

Siphuncular structure in the orders Tarphycerida and Barrandeocerida (Cephalopoda: Nautiloidea)

Abstract: The siphuncular structure is described in two Silurian taxa, Boionautilus tyrannus and Cumingsoceras complanatus, currently placed in the Tarpycerida. Tarphycerids have the Nautilus type of connecting ring that is composed of an outer, thick, spherulitic‐prismatic layer and an inner glycoprotein layer, the latter was destroyed by diagenesis. However, both Silurian specimens have the connecting ring of the calcified‐perforate type, previously known to occur in orthocerids, actinocerids, plectronocerids and now also in barrandeocerids. In this type, the inner layer of the connecting ring is calcified and perforated by pore canals. Boionautilus and Cumingsoceras are therefore classified with barrandeocerids and not with tarphycerids.