Tomato yellow leaf curl viruses: ménage à trois between the virus complex,the plant and the whitefly vector

Tomato yellow leaf curl disease (TYLCD) is one of the most devastating viral diseases affecting tomato crops in tropical, subtropical and temperate regions of the world. Here, we focus on the interactions through recombination between the different begomovirus species causing TYLCD, provide an overview of the interactions with the cellular genes involved in viral replication, and highlight recent progress on the relationships between these viruses and their vector, the whitefly Bemisia tabaci. Taxonomy: The tomato yellow leaf curl virus‐like viruses (TYLCVs) are a complex of begomoviruses (family Geminiviridae, genus Begomovirus) including 10 accepted species: Tomato yellow leaf curl Axarquia virus (TYLCAxV), Tomato yellow leaf curl China virus (TYLCCNV), Tomato yellow leaf curl Guangdong virus (TYLCGuV), Tomato yellow leaf curl Indonesia virus (TYLCIDV), Tomato yellow leaf curl Kanchanaburi virus (TYLVKaV), Tomato yellow leaf curl Malaga virus (TYLCMalV), Tomato yellow leaf curl Mali virus (TYLCMLV), Tomato yellow leaf curl Sardinia virus (TYLCSV), Tomato yellow leaf curl Thailand virus (TYLCTHV), Tomato yellow leaf curl Vietnam virus (TYLCVNV) and Tomato yellow leaf curl virus(TYLCV). We follow the species demarcation criteria of the International Committee on Taxonomy of Viruses (ICTV), the most important of which is an 89% nucleotide identity threshold between full‐length DNA‐A component nucleotide sequences for begomovirus species. Strains of a species are defined by a 93% nucleotide identity threshold. Host range: The primary host of TYLCVs is tomato (Solanum lycopersicum), but they can also naturally infect other crops [common bean (Phaseolus vulgaris), sweet pepper (Capsicum annuum), chilli pepper (C. chinense) and tobacco (Nicotiana tabacum)], a number of ornamentals [petunia (Petunia×hybrida) and lisianthus (Eustoma grandiflora)], as well as common weeds (Solanum nigrum and Datura stramonium). TYLCVs also infect the experimental host Nicotiana benthamiana. Disease symptoms: Infected tomato plants are stunted or dwarfed, with leaflets rolled upwards and inwards; young leaves are slightly chlorotic; in recently infected plants, fruits might not be produced or, if produced, are small and unmarketable. In common bean, some TYLCVs produce the bean leaf crumple disease, with thickening, epinasty, crumpling, blade reduction and upward curling of leaves, as well as abnormal shoot proliferation and internode reduction; the very small leaves result in a bushy appearance.     

From flower to seed: identifying phenological markers and reliable growth functions to model reproductive development in the common bean (Phaseolus vulgaris L.)

The lack of dependable morphological indicators for the onset and end of seed growth has hindered modeling work in the common bean (Phaseolus vulgaris L.). We have addressed this problem through the use of mathematical growth functions to analyse and identify critical developmental stages, which can be linked to existing developmental indices. We performed this study under greenhouse conditions with an Andean and a Mesoamerican genotype of contrasting pod and seed phenotypes, and three selected recombinant inbred lines. Pods from tagged flowers were harvested at regular time intervals for various measurements. Differences in flower production and seed and pod growth trajectories among genotypes were detected via comparisons of parameters of fitted growth functions. Regardless of the genotype, the end of pod elongation marked the beginning of seed growth, which lasted until pods displayed a sharp decline in color, or pod hue angle. These results suggest that the end of pod elongation and the onset of color change are reliable indicators of important developmental transitions in the seed, even for widely differing pod phenotypes. We also provide a set of equations that can be used to model different aspects of reproductive growth and development in the common bean.     

Miocene intertidal zonation on a volcanically active shoreline: Porto Santo in the Madeira Archipelago,Portugal

Santos, A., Mayoral, E.J., da Silva, C.M., Cachão, M., Johnson, M.E. & Baarli, B.G. Miocene intertidal zonation on a volcanically active shoreline: Porto Santo in the Madeira Archipelago, Portugal. Lethaia, Vol. 44, pp. 26–32. Short‐term biological colonization of rockgrounds on the basaltic shorelines of oceanic islands has, as yet, been poorly explored. A Miocene sea cliff on Ilhéu de Cima off Porto Santo in the Madeira Archipelago of Portugal provides a case study showing intertidal zonation with two types of barnacles, serpulid worm tubes, two coral species, epifaunal bivalves and the trace fossils of endolithic bivalves. Large barnacles (Balanus sp.) and serpulids are limited to the upper 400 mm of a basalt cliff of 1.6 m in height. Small barnacles, possibly of the same species, extend to the base. The upper half includes the corals Isophyllastrea orbignyana and Tarbellastraea reussiana, to which many small, coral‐inhabiting, barnacles (Ceratoconcha costata) are fixed. Borings identified as Gastrochaenolites torpedo appear through the bottom two‐thirds of the cliff face. Rarely, Gastrochaenolites lapidicus is exposed in longitudinal section with borings up to 45 mm deep in solid basalt. Epifaunal bivalves, such as Spondylus sp., are limited to a middle zone. Associated with the sea cliff is an outer platform on which a multitude of T. reussiana colonies occur in growth position. The corals exhibit planar erosion over180 m². The shelf was faulted and cut by a basalt dike prior to the brief recolonization of I. orbignyana, found attached to low fault scarps. Habitation of the sea cliff was facilitated by rising sea level, but abruptly terminated by burial under volcanoclastic ejecta. □Basalt bioerosion, coastal dynamics, Ilhéu de Cima (Porto Santo), Miocene intertidal zonation, volcanogenic perturbations.     

Colonization by barnacles on fossil Clypeaster: an exceptional example of larval settlement

The presence of c. 1450 individuals of the balanid barnacle Balanus crenatus Bruguière encrusting the test of a clypeasteroid sea urchin from the Late Miocene of the Guadalquivir Basin (southwestern Spain) allows proposing a settlement pattern linked to the growth of the encrusting organism. The possible influence of dip angle was controlled by dividing the test into four concentric zones ranging from lowest margin to apex (0–15°, 15–30°, 30–50° and 0°). Contour diagrams were prepared to identify areas of highest barnacle density as well as size categories distribution in relationship to the pitch of the sea urchin test. The orientation of balanid tests was recorded and plotted on rose diagrams from 0° to 180°. Four size categories of barnacles were distinguished: (1) < 1 mm, (2) 1–2 mm, (3) 2–3 mm and (4) 3–4 mm; these correspond to a growth sequence ranging from post‐larval forms to juveniles. Two areas of maximum settlement density are situated on the posterior margin of the test, on aboral as well as oral surfaces. The aboral surface shows the maximum number of barnacles. Two groups of individuals are defined on the basis of their location, that is, those encrusting the posterior medium part of the urchin, and those located on the anterior half. The results suggest that larval settlement was initially controlled by the availability of free space and afterwards by an intensification effect. Orientation and dip of the test may have played a secondary role in the settlement of the larvae. Substrate colonization seems to have been closely related to the biostratinomic history of the sea urchin test and although several scenarios are possible, our data are congruent with a synchronous settlement of both surfaces (aboral and oral) by one spat or several.     

Genetic and morphological variability of the endangered Syngonanthus mucugensis Giul. (Eriocaulaceae) from the Chapada Diamantina, Brazil: implications for conservation and taxonomy

Allozymic and morphometric studies were carried out on ten populations of Syngonanthus mucugensis (Eriocaulaceae), a species from north-eastern Brazil threatened by extinction. Genetic and morphological variability was low or moderately low in all populations, being lower in populations from Rio de Contas/Catolés ( P _L = 14.3–21.4, A  = 1.1–1.2, H _e = 0.026–0.059, D2M = 26.893–33.157) than in those from Mucugê ( P _L = 28.6–35.7, A  = 1.3–1.5, H _e = 0.078–0.164, D2M = 28.999–45.077). A high coefficient of endogamy ( F _is = 0.257) was found, which can be explained by the reproductive characteristics and distribution of the species. The values for genetic and morphological structuring ( F _st = 0.512 and A _MRPP = 0.175, respectively) were high as a result of the differentiation between populations from the two areas. The mean genetic identity between populations from the two areas (0.812) was much lower than between populations from the same area (Mucugê, 0.980; Rio de Contas/Catolés, 0.997). These results indicate that we are dealing with two distinct taxa and, as a result of the nature of the morphological differences found, a new subspecies is described for the populations of the region of Rio de Contas and Catolés, Syngonanthus mucugensis ssp. riocontensis . Such conclusions raise important implications for the conservation of Syngonanthus mucugensis , and will be used in the drawing up of management plans for its conservation.  © 2007 The Linnean Society of London, Botanical Journal of the Linnean Society , 2007, 153 , 401–416.     

Stem respiration in tropical forests along an elevation gradient in the Amazon and Andes

Autotrophic respiration involves the use of fixed carbon by plants for their own metabolism, resulting in the release of carbon dioxide as a by‐product. Little is known of how autotrophic respiration components vary across environmental gradients, particularly in tropical ecosystems. Here, we present stem CO₂ efflux data measured across an elevation transect spanning ca. 2800 m in the Peruvian Amazon and Andes. Forest plots from five elevations were studied: 194, 210, 1000, 1500, and 3025 m asl Stem CO₂ efflux (R_s) values from each plot were extrapolated to the 1‐ha plot level. Mean R_s per unit stem surface area declined significantly with elevation, from 1.14±0.12 at 210 m elevation to 0.62±0.09 μmol C m⁻² s⁻¹ at 3025 m elevation. When adjusted for changing forest structure with elevation, this is equivalent to 6.45±1.12 Mg C ha⁻¹ yr⁻¹ at 210 m elevation to 2.94±0.19 Mg C ha⁻¹ yr⁻¹ at 3025 m elevation. We attempted to partition stem respiration into growth and maintenance respiration components for each site. Both growth and maintenance respiration rates per unit stem showed similar, moderately significant absolute declines with elevation, but the proportional decline in growth respiration rates was much greater. Stem area index (SAI) showed little trend along the transect, with declining tree stature at higher elevations being offset by an increased number of small trees. This trend in SAI is sensitive to changes in forest stature or size structure. In the context of rapid regional warming over the 21st century, such indirect, ecosystem‐level temperature responses are likely to be as important as the direct effects of temperature on maintenance respiration rates.     

Phylogenetic relationships of the pygmy rice rats of the genus Oligoryzomys Bangs, 1900 (Rodentia: Sigmodontinae)

Sequences from two mitochondrial genes (cytochrome b and NADH1) were used to produce a molecular phylogeny for 12 named and two undescribed species of the genus Oligoryzomys. All analyses placed Oligoryzomys microtis as the most basal taxon, a finding consistent with previous studies that suggested the west‐central Amazon as a centre of origin for the tribe Oryzomyini to which Oligoryzomys belongs. Biogeographically, this suggests that Oligoryzomys had a South American origin, and later advanced northwards, entering Central America and Mexico more recently. Different analyses have provided consistent support for several additional clades that did not necessarily agree with the species groups hypothesized by previous studies. A molecular clock derived for these data suggests an origin for the genus of 6.67 Mya, with most speciation within the genus occurring between 3.7 and 1.5 Mya. © 2010 The Linnean Society of London, Zoological Journal of the Linnean Society, 2010, 160 , 551–566.