Production of xylooligosaccharides from enzymatic hydrolysis of xylan by the white-rot fungi Pleurotus

The white-rot fungi basidiomycetes Pleurotus sp. BCCB068 and Pleurotus tailandia were used to degrade oat-spelt xylan under submerged fermentation over a period of 40 days. Activities of endo-1,4-β-xylanase and β-xylosidase and xylan degradation products were determined. Xylan degradation by Pleurotus sp. BCCB068 and P. tailandia reached 75.1% and 73.4%, respectively. The formation of xylooligosaccharides and the simple sugars xylose, arabinose, cellobiose, mannose, and maltose were observed for both strains. The xylan degradation exhibited by these Pleurotus strains indicates they have potential for use in biotechnological processes related to degradation of hemicellulose sources.     

Protecting Free-Living Dormice: Molecular Identification of Cestode Parasites in Captive Dormice (<Emphasis Type="Italic">Muscardinus avellanarius</Emphasis>) Destined for Reintroduction

The success of any population translocation programme relies heavily on the measures implemented to control and monitor the spread of disease. Without these measures, programmes run the risk of releasing immunologically naïve species or, more dangerously, introducing novel infectious agents to native populations. As a precaution, a reintroduction programme for the common or hazel dormouse, Muscardinus avellanarius, in England screens dormice before release following captive breeding. Using PCR sequencing of a range of genes, we tested whether the same species of tapeworm(s) were present in captive and free-living dormice. Whilst only Rodentolepis straminea were identified in free-living dormice, cestode ova found in a captive individual produced a molecular match closely related to Hymenolepis microstoma and a previously unrecorded Rodentolepis species. To prevent putting at risk the free-living population, we recommended the continued treatment of dormice showing tapeworm infection before release. Our work demonstrates how molecular techniques can be used to inform reintroduction programmes, reduce risk from disease and increase chances of reintroduction success.     

Lifetime semen production in a cheetah (Acinonyx jubatus)

Lifetime semen production data provide valuable insight into a species’ natural history and biology as well as information about the potential fertility of males at various life stages. An understanding of the ages of sexual maturity, peak sperm production, and gonadal senescence will contribute to the design of species management plans for captive, free‐ranging, and reintroduced populations of exotic animals. To describe these life stages in the cheetah, semen was collected biweekly for 13 years from a solitary male beginning at 3 years of age. The 338 ejaculates were obtained noninvasively by artificial vagina. Ejaculate volume and sperm motility score, concentration, and normal morphology were recorded. A sperm quality index incorporating all five semen parameters was calculated to facilitate ejaculate comparisons. Polynomial regression analysis revealed a significant effect of age on volume, which increased throughout the animal’s lifetime except for a reduction between ages 10 and 12. Concentration was also significantly affected by age and increased from the age of 3 to the age of 10, then decreased. The sperm quality index revealed a significant effect of age as it increased from age 3 to age 8, then declined as the male grew older. The cheetah did not reach peak semen production until age 8 and continued to produce good quality semen for several more years. These data were somewhat unexpected, given the average cheetah life expectancy of approximately 7 years. Zoo Biol 20:359–366, 2001. © 2001 Wiley‐Liss, Inc.     

Enhanced expression of the complement regulatory protein CD55 predicts a poor prognosis in colorectal cancer patients

This study prospectively correlated the level of expression of CD55 on tumours with 7-year survival in 136 colorectal cancer patients. Patients with tumours expressing high levels of CD55 had a significantly worse survival (24%) than patients with low CD55 levels (50%, p<0.02). A similar difference was seen for patients (Duke's B or C) with a high risk of recurrence (29% vs 58%, p<0.05). Furthermore, there was a progressive deterioration in prognosis with increasing antigen expression (p=0.01). It remains unclear if CD55 is overexpressed by tumours to protect them from complement or if it is related to the recent observation that CD55 is a ligand for the T-cell activation antigen CD97. However, it is a marker of aggression, as colorectal cancer patients whose tumours overexpress CD55 have a significantly reduced 7-year survival.     

An atomic-level mechanism for molybdenum nitrogenase. Part 1. Reduction of dinitrogen

The properties of the Fe and Mo sites of the iron-molybdenum cofactor of nitrogenase with respect to binding and activation of N(2) have been studied by molecular mechanics calculations on the local protein environment and by density functional theory (DFT) calculations on subsections of the cofactor. The DFT calculations indicate that the homocitrate ligand of the cofactor can become monodentate on reduction, allowing N(2) to bind at Mo. In addition, the neighboring Fe atom plays a crucial role in N(2) reduction by stabilizing the initial reduced N(2) species and by facilitating cleavage of the N-N bond. The various possible isomers for partially reduced N(2) intermediates have been compared by DFT, and a detailed model for the reduction of N(2) is developed based on these results, together with chemical precedents and the available biochemical data for nitrogenase.     

DNA binding specificity of the replication initiator protein, DnaA from Helicobacter pylori

The key protein in the initiation of Helicobacter pylori chromosome replication, DnaA, has been characterized. The amount of the DnaA protein was estimated to be approximately 3000 molecules per single cell; a large part of the protein was found in the inner membrane. The H.pylori DnaA protein has been analysed using in vitro (gel retardation assay and surface plasmon resonance (SPR)) as well as in silico (comparative computer modeling) studies. DnaA binds a single DnaA box as a monomer, while binding to the fragment containing several DnaA box motifs, the oriC region, leads to the formation of high molecular mass nucleoprotein complexes. In comparison with the Escherichia coli DnaA, the H.pylori DnaA protein exhibits lower DNA-binding specificity; however, it prefers oriC over non-box DNA fragments. As determined by gel retardation techniques, the H.pylori DnaA binds with a moderate level of affinity to its origin of replication (4nM). Comparative computer modelling showed that there are nine residues within the binding domain which are possible determinants of the reduced H.pylori DnaA specificity. Of these, the most interesting is probably the triad PTL; all three residues show significant divergence from the consensus, and Thr398 is the most divergent residue of all.     

Investigation of a recent rise of dual amantadine-resistance mutations in the influenza A M2 sequence

Background

The S31N amantadine-resistance mutation in the influenza A M2 sequence currently occurs more frequently in nature than the S31 wild type. Overcoming the resistance of the S31N mutation is the primary focus of M2 researchers who aim to develop novel antiviral therapies. Recent studies have noted a possible rise in frequency of the V27A/S31N double amantadine-resistance mutation in recent years. The purpose of this study is to investigate this recent rise in frequency of the double mutation and any possible bias of the other mutations toward co-occurrence with S31N or S31 strains.

Results

The primary dataset used for this study was comprised of 24,152 influenza A M2 channel sequences which were downloaded from UniProt. There is an increased frequency for the S31N/V27A dual AR mutation in recent years, especially in swine. A test for difference in two proportions indicates that the V27A mutation is co-occurring with S31N more often than expected (p-value < 0.001) when considering individual amino acid frequencies. At the same time, the different propensities for the V27A as compared to the V27T dual mutant may reflect differences in viral fitness or protein energetics, and this information could be exploited to focus drug development so as to reduce further drug insensitivity.

Conclusions

The development of the S31N/V27A variant in the Midwestern US swine may be a harbinger of novel human strain development. V27A/S31N is a possible path forward for the evolution of M2 which may convey a new level of drug resistance and should receive attention in drug design.